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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0139400 |
| Transcript ID | LotjaGi5g1v0139400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | zinc finger (AN1-like) family protein; TAIR: AT2G41835.1 zinc finger (C2H2 type, AN1-like) family protein; Swiss-Prot: sp|Q0D5B9|SAP16_ORYSJ Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16; TrEMBL-Plants: tr|I1JG86|I1JG86_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0139400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:33595249..33597564) extracted from Lotus japonicus Gifu genome v1.2.
AAAGTTATTTGCGAAGGAGTCGTAGTCAAGCAGTGGAAGACTGAATTCCGACGACTCCCTTCTCTGTTCTGTCTCGCTGA ATTACCCATTTCATTCCAAATGGGTACTCCGGAATTCCCAGATCTTGGAAAGCACTGTGCTGTCTCTGATTGCAAGCTCG TTGATTTCTTACCCTTCACTTGCGATCGTTGCAACCAGGTTTTTCCATTTCCCTCTTCTTCATTCTCGTTCTTGAGTTTA TATGGCTAACATTTATTTTATGTATGTGATTTCTGTATAATTTATATCCATTGATTTTTCTTGAAATGAATTTACTTTTA AACCTTTTGTATGCATAACTGATTATAGGGATATGAGCATGTAGTTTTTGGCACCAATTGCTTTAAAGTGTGCATTTGCT CCCAAAGTTGTTGAGCAATCTAAGGTAGGTAGGAAACTAGGTTGGTTGAGAGACACTTACAGGCTAGGAAAGTGATGCTT AAGATTGGGAAACCAGAACAGGGGAATGATTGGCTCCTGATATTTGAAGCTTCAGGTTATTTTATTTCCGCAAGCTTCGA AGTTCACGAAATACAAATATTGTCAAAAAATTGAAACTATGTTAGTTGTATTTACTGTTTGTGTTCCATTTTGTTGAAGT TTGTTTCTTGAAATTTGTTAGTTGGTATTTGTTTAGACTGCAATGAAAGTATGATGATGGGTGTCAGTGTGTCACCAAGT TCTTTGTGTGCATATTTTGTTTATTAATATTATATTTGTAACAATGCTACTACATATATACATTGAAGGGATGTTGTAAT TTTTTCAACTTCTAAAATTTTAAATATTGGAATTCATGCTTAGTATTCATGTTCCCCTCAAATTTTTGGGTTAAGTTACC CCACTGCTCATGATTTTCATTTTTCTTTAGTTCTTAGAAGCACCTTAACTCCTGGAGTTCATGCAAGTAACAATGTCTTT AGTTCATGATGACAATCTGGGGATTTATTTGTACGGAATTATGATTAGTATTCTCCCGGTGTTAAGTTTTTAGAGCTCCT TGTTTGTTCTAACTGTATAACCAAAATTCGTTGCAGGTGTATTGTTTGGAGCACCGAAGCTATATTAGACACCAGTGCAC AAAAGCTGATAAGCTAGATCTCACTGTAGTGATATGTCCACTTTGTGCCAAAGGGGTTCGCCTAGTTCCTGATCAAGATC CGAATATAACTTGGGAGAATCATGTTAACACCGATTGCGACCCGTCAAATTATGAGAAAGTCACAAAGAAGAAAAAATGC CCTGCCGCTGGATGCAAGGAGATCTTAGTATTCTCAAACACAATTAAGTGCAGGGACTGCATGTTAGACCATTGTCTGAA GCATCGGTTCGGACCTGATCATAAATGTCCGGGGCCCAAAAAATTGGAAACAAGTTTCCCGTTTCTGAGTCTTTTGAACA AGAATAGAAAAGAGGAACGGAAACCCAATTCAAGTTCAACCCCCTCATCATCTAAATGGTCTTCAAGCTTTCTTAATGCA GCTTCTAACATTCGAGCTTCAGCTGAGGCTGGCATGTCAAAATTGAGTGGTGAAATTAACCAAGTATGGCAGACAACAAA GGATGGAGTGGGACAGAACAGTGGCAGTGAACACGTAGAGCAATGCCCTCAGTGTGGTGCCAAGTTTTCCTCAGTCACTA CTTTGGTGGAGCATGTACAAAAGGTTCATGAAAGAAGTGGCAACCAATCTGGAGTGAGGGTTGCAATTGATGTTTGTCCT AAGTGCAGTAAAGGATTTCGAGACCCTGTGTCTCTTGTGGAGCATGTTGAGAGGGATCATGGTGGTAGTTCAAGAGCCTA GTGTGAAGTTCATATTGAATTAGTTTCTAATTGAAGGAATTGTACTTTCTGCATTGAGCTATGATTTGCACACACTAACA GTACAAACAATCTACATACACCCAATTTTGTTCTCTTTGAATCAATCACATTCATATTTCTCTCTCTTCTCTTCCTTTCT CACTTGGGTGTCTAACTCATTGAGTGTCTACCTAACATTTTCCTTTGCTGGGATGAATTCAGTGTACTTTTCCATTTATT GGGTCCCATTTTATAGCAGCAAGATATGAATAAGAATTTGAAGATGTTTGTTATTTTTCAACATCACAGTTGGAAACGAA GCATCATTTGATTGCTTGATTACTTTACAAGTTTTTCTTTAAAAATTCCTTCTCTCATGGTATGAATGATCTTTGTTCAA AGTCCTGCAGGAATTGCCATTTTGGATACTTGCTTTTCAGCTTACTATGCTTTGCTTAGCCTGCAGTTTGTAATGT
CDS sequence (LotjaGi5g1v0139400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTACTCCGGAATTCCCAGATCTTGGAAAGCACTGTGCTGTCTCTGATTGCAAGCTCGTTGATTTCTTACCCTTCAC TTGCGATCGTTGCAACCAGGTGTATTGTTTGGAGCACCGAAGCTATATTAGACACCAGTGCACAAAAGCTGATAAGCTAG ATCTCACTGTAGTGATATGTCCACTTTGTGCCAAAGGGGTTCGCCTAGTTCCTGATCAAGATCCGAATATAACTTGGGAG AATCATGTTAACACCGATTGCGACCCGTCAAATTATGAGAAAGTCACAAAGAAGAAAAAATGCCCTGCCGCTGGATGCAA GGAGATCTTAGTATTCTCAAACACAATTAAGTGCAGGGACTGCATGTTAGACCATTGTCTGAAGCATCGGTTCGGACCTG ATCATAAATGTCCGGGGCCCAAAAAATTGGAAACAAGTTTCCCGTTTCTGAGTCTTTTGAACAAGAATAGAAAAGAGGAA CGGAAACCCAATTCAAGTTCAACCCCCTCATCATCTAAATGGTCTTCAAGCTTTCTTAATGCAGCTTCTAACATTCGAGC TTCAGCTGAGGCTGGCATGTCAAAATTGAGTGGTGAAATTAACCAAGTATGGCAGACAACAAAGGATGGAGTGGGACAGA ACAGTGGCAGTGAACACGTAGAGCAATGCCCTCAGTGTGGTGCCAAGTTTTCCTCAGTCACTACTTTGGTGGAGCATGTA CAAAAGGTTCATGAAAGAAGTGGCAACCAATCTGGAGTGAGGGTTGCAATTGATGTTTGTCCTAAGTGCAGTAAAGGATT TCGAGACCCTGTGTCTCTTGTGGAGCATGTTGAGAGGGATCATGGTGGTAGTTCAAGAGCCTAG
Protein sequence (LotjaGi5g1v0139400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTPEFPDLGKHCAVSDCKLVDFLPFTCDRCNQVYCLEHRSYIRHQCTKADKLDLTVVICPLCAKGVRLVPDQDPNITWE NHVNTDCDPSNYEKVTKKKKCPAAGCKEILVFSNTIKCRDCMLDHCLKHRFGPDHKCPGPKKLETSFPFLSLLNKNRKEE RKPNSSSTPSSSKWSSSFLNAASNIRASAEAGMSKLSGEINQVWQTTKDGVGQNSGSEHVEQCPQCGAKFSSVTTLVEHV QKVHERSGNQSGVRVAIDVCPKCSKGFRDPVSLVEHVERDHGGSSRA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 286 | 286 | 8.6E-156 | – | |
| PANTHER | 1 | 286 | 286 | 8.6E-156 | – | |
| Gene3D | 2 | 58 | 57 | 1.7E-16 | ||
| SUPERFAMILY | 6 | 50 | 45 | 1.07E-12 | ||
| ProSiteProfiles | 10 | 59 | 50 | 7.595 | ||
| SMART | 13 | 52 | 40 | 0.0037 | ||
| Pfam | 13 | 51 | 39 | 1.7E-13 | ||
| SUPERFAMILY | 57 | 143 | 87 | 1.28E-8 | ||
| Gene3D | 80 | 147 | 68 | 9.1E-8 | ||
| ProSiteProfiles | 98 | 147 | 50 | 7.803 | ||
| SMART | 101 | 142 | 42 | 0.21 | ||
| Pfam | 101 | 141 | 41 | 5.2E-8 | ||
| Gene3D | 197 | 284 | 88 | 1.7E-9 | – | |
| ProSiteProfiles | 221 | 249 | 29 | 9.64 | ||
| SMART | 221 | 244 | 24 | 0.0029 | ||
| SUPERFAMILY | 222 | 277 | 56 | 2.05E-5 | ||
| Pfam | 222 | 244 | 23 | 5.3E-4 | – | |
| ProSitePatterns | 223 | 244 | 22 | - | ||
| SMART | 258 | 281 | 24 | 5.5 | ||
| ProSiteProfiles | 258 | 286 | 29 | 9.037 | ||
| Pfam | 259 | 281 | 23 | 0.0035 | ||
| ProSitePatterns | 260 | 281 | 22 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0139400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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