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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0146900 |
| Transcript ID | LotjaGi5g1v0146900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT3G49740.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9M2Y4|PP276_ARATH Pentatricopeptide repeat-containing protein At3g49740; TrEMBL-Plants: tr|A0A1J7HU12|A0A1J7HU12_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0146900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:37425943..37428706) extracted from Lotus japonicus Gifu genome v1.2.
GAAGAAAGAGGAAAGAGGAGATGAGAGAGAATGTGAGGATGGAGATTGGGAAATTTTTATGATTTTTTTCATTAAGGGCA TTTTAAAATTTCATACTTTTAGAGGGATTTAAATAAATGTGAAGGGGTGTGAGTAACAATTCTCATTGATGTTTAGAAAA CCTATTTTCTTGAGTTGTTCCCCGTCCAAAAACTTACTCACAATCTGGTAGGCAACCAACCAAAGGCAATACAGAATCAG AGAGATGACTGATGAAGAAGTGCTGGTTTTCCCGGCAGATGTCGACGACGACCATTTCCAGCGAACAAATCCTCAAACTC AACCACTTGCTCGCAACACTCACTCGCTCAAATCAACACACCGAGTCTCTCAAACTCTTCACCCAAATTCACTCATCCCA CACTCTCAGACCCGACCACTACACCCTCTCCACCGCCATCACCGCCTCCGCCAACACCCGCCCCGCCGCCACCGCCACCA CCTTCGGGAACCAGCTTCACGCCCACGCCATCCGAACCGGCCTCAAAGCGCACTCTCATGTGGCGAACTCTTTGCTCTCT CTCTACGCCAAAGCTGAGGACCTTGCTTCTGTGGAACGTGCTTTTGCAGAAATTGAATACCCAGATGATTATTCATGGAC CACAATGCTGTCTGCTTCAACTAGACTGGGCCATGTTGGTGATGCCCTTAAGCTGTTTGATCAAATGCCAAACAGGAGCA ATGTGGCTGTTTGGAATGCCATTATCACTCGGTGCGGCGCCGATAATGGGCATGATGATGTTGCTTTTGATCTGTTCAGG GATATGCAGAAAATAGGTGTTAGGCCTGATGGTTACACCTTCACCAGCATGCTTAGTTTGTGCTCTGTGGAGCTTTTGGA TTTTGGAAGGCATGTCCATTCAGTGGTTATCAGAAGTGGTTTCTTGGCTAGGACTTCTGTGGTTAATTCTCTGATCACTA TGTATTTTAACTGTGGATGTGTTGTGGATGCTTATCAGGTGTTTGGGGAAGTAGAAGCTGGGCTTCGTGATCATGTTACG TATAATGCAATGATAGATGGTCTTGTGCGCGTGGATAGAAATGAAGATGCTTTTGTAATGTTCAGAGATATGCAAAAGGC GTGTTTTAGTCCAATGGAAGCTACCTTTGTGAGTGTCATGAGCTCTTGCTCTTCTCTGAGGGTTGGCTGTCAAGCACAAG CACAATCTATCAAAACAGGGTTTGATGCTTATACTGCTGTGAACAATGCAACGATGACCATGTATTCCTGCTTTGGGAAG GTCAATGAAGCTCAAAATATTTTTGAGAGAATGGAAGAAAGGGATCTTGTTTCATGGAACATAATGATTTCAATGTTTTT TCAAGAGAATCTTAACGAAACAGCAATCTTAACCTATCTGAAAATGAGGAGGGTAGGAATTGAACCAGATGAGTTTACTT ATGGAAGTCTGCTAGGTGCCTCAGACTCTTTGCAAGTTGTGGAGATGGTCCACTCCCTCCTATCGAAAATTGGGCTTATG AAAGTTGAAGTTTTGAATTCATTGATTGCTGCATATTGCAGAAATGGAAGGATAAATTGGGCCTTACAAATCTTCTCTAA TCTTCCCTATAAAAGTTTGATATCCTGGAATACTATCATATCTGGATTCCTCACAAATGGATGCCCACTGCAAGGGTTAG AGCAATTCTCTGCGTTACTTAATACACCTCTGAAGCCAAATGCCTATTCCCTCAGTCTTATTTTGAGCATTTGTTCTAGC ACTTCATCCATGAGTCATGGGAAACAGGTTCACGGTTACATATTACGACATGGTTTTTCTTCAGAAATTTCTTTGGGTAA TGCCCTGGTCACAATGTATGCCAAATGTGGATCTTTAGACGGGTCGTTGGGAGTATTTAATGCAATGGTGAAAAGAGATA CAATCTCTTGGAATGCTCTAATATCTGCTTACGCACAACATGGACAAGGCAAAGAAGCTGTGTGCTGTTTTGAGGCAATG CAGATCTCACCTGGAATCGAACCAGACCACGCGACCTTTACTATTGTTCTTTCAGCTTGTAGTCATGTAGGTTTAGTTGA TGATGGTACCCGTATTTTTGATATGATGGTGAACATTTACGGATTTGTACCCAGTGTGGATCATTTTTCTTGTATAGTTG ATCTGCTGGGCCGCAGTGGATACCTTGAAGAGGCCGAAAGATTAATTAAAGGTGGATATTTTGGAGCAAATTCTAATATC TGCTGGTCATTGTTCAGTGCTTGTGCAGCTCATGGTAATTTAAGGCTAGGAAGAATGGTTGCCAGACTTCTCCTGGAAAA AGACCATAACAATCCATCAGTTTATGTGCTTTTATCAAATATCTGTGCAGCTGCCGGCCAGTGGGAAGAAGCAGCTAATC TTAGAGATATGATGAGAGAATTTGGGACAACAAAGCAGCCTGGCTGCAGTTGGATCGGAACCTAGGACTTGCAAGTTATA GGTGCTTGTAAATGTATAAGCATGAGCATAATGTGATGGGTTTCCCAAATAAGGGGAGAACTTCTTATAAGTTTCCGCAT TCCCTTCCCTAAAAAAACAGTACAATTAAATTATGGTAGGAATAAGATAAAGGGTTTTTGTATTTTGATTTATTTTTGTA CTTTTGTACTATGGTTTTATACATGTGTAATGTAATCTTAGTTCATATAATTGTCCTTACTTTTAAAATTGCCCAAATAT GGGCTCTATTATGGACACTAGAACATCAAAAAAAAAAACATTTT
CDS sequence (LotjaGi5g1v0146900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAGTGCTGGTTTTCCCGGCAGATGTCGACGACGACCATTTCCAGCGAACAAATCCTCAAACTCAACCACTTGCT CGCAACACTCACTCGCTCAAATCAACACACCGAGTCTCTCAAACTCTTCACCCAAATTCACTCATCCCACACTCTCAGAC CCGACCACTACACCCTCTCCACCGCCATCACCGCCTCCGCCAACACCCGCCCCGCCGCCACCGCCACCACCTTCGGGAAC CAGCTTCACGCCCACGCCATCCGAACCGGCCTCAAAGCGCACTCTCATGTGGCGAACTCTTTGCTCTCTCTCTACGCCAA AGCTGAGGACCTTGCTTCTGTGGAACGTGCTTTTGCAGAAATTGAATACCCAGATGATTATTCATGGACCACAATGCTGT CTGCTTCAACTAGACTGGGCCATGTTGGTGATGCCCTTAAGCTGTTTGATCAAATGCCAAACAGGAGCAATGTGGCTGTT TGGAATGCCATTATCACTCGGTGCGGCGCCGATAATGGGCATGATGATGTTGCTTTTGATCTGTTCAGGGATATGCAGAA AATAGGTGTTAGGCCTGATGGTTACACCTTCACCAGCATGCTTAGTTTGTGCTCTGTGGAGCTTTTGGATTTTGGAAGGC ATGTCCATTCAGTGGTTATCAGAAGTGGTTTCTTGGCTAGGACTTCTGTGGTTAATTCTCTGATCACTATGTATTTTAAC TGTGGATGTGTTGTGGATGCTTATCAGGTGTTTGGGGAAGTAGAAGCTGGGCTTCGTGATCATGTTACGTATAATGCAAT GATAGATGGTCTTGTGCGCGTGGATAGAAATGAAGATGCTTTTGTAATGTTCAGAGATATGCAAAAGGCGTGTTTTAGTC CAATGGAAGCTACCTTTGTGAGTGTCATGAGCTCTTGCTCTTCTCTGAGGGTTGGCTGTCAAGCACAAGCACAATCTATC AAAACAGGGTTTGATGCTTATACTGCTGTGAACAATGCAACGATGACCATGTATTCCTGCTTTGGGAAGGTCAATGAAGC TCAAAATATTTTTGAGAGAATGGAAGAAAGGGATCTTGTTTCATGGAACATAATGATTTCAATGTTTTTTCAAGAGAATC TTAACGAAACAGCAATCTTAACCTATCTGAAAATGAGGAGGGTAGGAATTGAACCAGATGAGTTTACTTATGGAAGTCTG CTAGGTGCCTCAGACTCTTTGCAAGTTGTGGAGATGGTCCACTCCCTCCTATCGAAAATTGGGCTTATGAAAGTTGAAGT TTTGAATTCATTGATTGCTGCATATTGCAGAAATGGAAGGATAAATTGGGCCTTACAAATCTTCTCTAATCTTCCCTATA AAAGTTTGATATCCTGGAATACTATCATATCTGGATTCCTCACAAATGGATGCCCACTGCAAGGGTTAGAGCAATTCTCT GCGTTACTTAATACACCTCTGAAGCCAAATGCCTATTCCCTCAGTCTTATTTTGAGCATTTGTTCTAGCACTTCATCCAT GAGTCATGGGAAACAGGTTCACGGTTACATATTACGACATGGTTTTTCTTCAGAAATTTCTTTGGGTAATGCCCTGGTCA CAATGTATGCCAAATGTGGATCTTTAGACGGGTCGTTGGGAGTATTTAATGCAATGGTGAAAAGAGATACAATCTCTTGG AATGCTCTAATATCTGCTTACGCACAACATGGACAAGGCAAAGAAGCTGTGTGCTGTTTTGAGGCAATGCAGATCTCACC TGGAATCGAACCAGACCACGCGACCTTTACTATTGTTCTTTCAGCTTGTAGTCATGTAGGTTTAGTTGATGATGGTACCC GTATTTTTGATATGATGGTGAACATTTACGGATTTGTACCCAGTGTGGATCATTTTTCTTGTATAGTTGATCTGCTGGGC CGCAGTGGATACCTTGAAGAGGCCGAAAGATTAATTAAAGGTGGATATTTTGGAGCAAATTCTAATATCTGCTGGTCATT GTTCAGTGCTTGTGCAGCTCATGGTAATTTAAGGCTAGGAAGAATGGTTGCCAGACTTCTCCTGGAAAAAGACCATAACA ATCCATCAGTTTATGTGCTTTTATCAAATATCTGTGCAGCTGCCGGCCAGTGGGAAGAAGCAGCTAATCTTAGAGATATG ATGAGAGAATTTGGGACAACAAAGCAGCCTGGCTGCAGTTGGATCGGAACCTAG
Protein sequence (LotjaGi5g1v0146900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKCWFSRQMSTTTISSEQILKLNHLLATLTRSNQHTESLKLFTQIHSSHTLRPDHYTLSTAITASANTRPAATATTFGN QLHAHAIRTGLKAHSHVANSLLSLYAKAEDLASVERAFAEIEYPDDYSWTTMLSASTRLGHVGDALKLFDQMPNRSNVAV WNAIITRCGADNGHDDVAFDLFRDMQKIGVRPDGYTFTSMLSLCSVELLDFGRHVHSVVIRSGFLARTSVVNSLITMYFN CGCVVDAYQVFGEVEAGLRDHVTYNAMIDGLVRVDRNEDAFVMFRDMQKACFSPMEATFVSVMSSCSSLRVGCQAQAQSI KTGFDAYTAVNNATMTMYSCFGKVNEAQNIFERMEERDLVSWNIMISMFFQENLNETAILTYLKMRRVGIEPDEFTYGSL LGASDSLQVVEMVHSLLSKIGLMKVEVLNSLIAAYCRNGRINWALQIFSNLPYKSLISWNTIISGFLTNGCPLQGLEQFS ALLNTPLKPNAYSLSLILSICSSTSSMSHGKQVHGYILRHGFSSEISLGNALVTMYAKCGSLDGSLGVFNAMVKRDTISW NALISAYAQHGQGKEAVCCFEAMQISPGIEPDHATFTIVLSACSHVGLVDDGTRIFDMMVNIYGFVPSVDHFSCIVDLLG RSGYLEEAERLIKGGYFGANSNICWSLFSACAAHGNLRLGRMVARLLLEKDHNNPSVYVLLSNICAAAGQWEEAANLRDM MREFGTTKQPGCSWIGT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 20 | 173 | 154 | 1.1E-19 | ||
| PANTHER | 30 | 154 | 125 | 1.8E-122 | – | |
| ProSiteProfiles | 125 | 155 | 31 | 9.339 | ||
| TIGRFAM | 127 | 155 | 29 | 4.0E-4 | ||
| Pfam | 127 | 154 | 28 | 3.3E-4 | ||
| Pfam | 157 | 204 | 48 | 7.0E-11 | ||
| ProSiteProfiles | 157 | 192 | 36 | 10.326 | ||
| PANTHER | 161 | 308 | 148 | 1.8E-122 | – | |
| Gene3D | 174 | 317 | 144 | 1.6E-27 | ||
| ProSiteProfiles | 227 | 257 | 31 | 5.963 | ||
| Pfam | 231 | 254 | 24 | 0.29 | ||
| Pfam | 260 | 306 | 47 | 2.4E-9 | ||
| ProSiteProfiles | 260 | 294 | 35 | 11.345 | ||
| TIGRFAM | 262 | 294 | 33 | 2.2E-6 | ||
| Gene3D | 318 | 415 | 98 | 3.4E-15 | ||
| PANTHER | 323 | 417 | 95 | 1.8E-122 | – | |
| ProSiteProfiles | 327 | 357 | 31 | 6.358 | ||
| Pfam | 358 | 402 | 45 | 1.5E-9 | ||
| ProSiteProfiles | 358 | 392 | 35 | 9.997 | ||
| TIGRFAM | 360 | 394 | 35 | 0.001 | ||
| PANTHER | 413 | 504 | 92 | 1.8E-122 | – | |
| ProSiteProfiles | 424 | 458 | 35 | 8.561 | ||
| Pfam | 428 | 449 | 22 | 0.0015 | ||
| TIGRFAM | 428 | 449 | 22 | 0.0013 | ||
| ProSiteProfiles | 490 | 524 | 35 | 6.16 | ||
| PANTHER | 495 | 721 | 227 | 1.8E-122 | – | |
| Gene3D | 501 | 609 | 109 | 1.2E-21 | ||
| ProSiteProfiles | 525 | 555 | 31 | 6.982 | ||
| Pfam | 530 | 555 | 26 | 0.05 | ||
| ProSiteProfiles | 556 | 591 | 36 | 9.788 | ||
| Pfam | 556 | 604 | 49 | 3.2E-12 | ||
| TIGRFAM | 558 | 592 | 35 | 2.7E-6 | ||
| ProSiteProfiles | 592 | 627 | 36 | 7.969 | ||
| Gene3D | 610 | 734 | 125 | 4.4E-11 | ||
| ProSiteProfiles | 694 | 728 | 35 | 8.67 | ||
| Pfam | 697 | 725 | 29 | 0.19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0146900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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