Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0151700 |
| Transcript ID | LotjaGi5g1v0151700.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat protein, putative; TAIR: AT5G43920.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A072VM11|A0A072VM11_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi5g1v0151700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:39607763..39615484) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGAGTAATCATTCTGAGGTGCTTATTGGTTCAAAAGCGTTGTTTAAAAAACATGAATTTGTGAGGATTATAGTTCA GTGTCTGTATTCATTAGGGTACAGCAAGTCTGCATCTTGTTTGGAAGTTGAATCTGGGGTTTTGTTCAAGTCCAAGGAGT TTCAGTTGCTTGAATCGCATGTTTTGAATGGGAATTGGGATGGTTGCATTGGTTTTCTTAATTCCATGAGGGATATTATG GGTGAAGCTGTGGAGTCTGCTCTGTTTCTTGTCCTGAGGCAGTGTCTTATGGAGTATATAAAGCATGGTGAGGTAACTTT GGCCTTGGATGTGTTGAGGAAACGAGTTTCCGCGTTGCATTTGGACCGTTACAAGGTTCACAGCCTGGCTAATAGTATGC TTTCCTTGAAGGATACCGAGATTGGTGGCGCCGTGGATGGTGATGCTGTTCGTGATTTGCGGAGGAAGCTGTTGACAGAT TTGGAGAAATTGCTCCCTCCGCCAATTTTGATACCGGATGGAAGGCTTGAGCATTTAGTTGAGACTACTGTTACTGCTTG GGTTGATTCGTGCTTGTATCACAATTCGTCGAATCCGATTTCACTCTATGAGGATCATCGGTGTGGTAGGGATCAGATTC CTACTACAACTACCCAGGTGAGTTGGGTCTGTAGAGTGTAGACTATTACTGTATGCTGGATAAATTGGTTATATTTTTAA GCTGATTTTTAAGATGAGTTGAAATCTGTTTGATGTTCTAGAAGAATTTGGTTTTGGCCATTTGCAAATCGATATTAAAT GACTGACAGATCCTTTTGCATCTCATTTTAAACATGTCATTGTGGGTTTGTGTTCTGGAGAGGGGGGGGGGGGGTGTTAA AATAAAACTTCAGGGAAACACTTGATGTTGAAATATGAAGTTTAGATCAATATTAGTACATCTACCAATGACTTTTATTA TCCGTAACATTTCCTCCCATTTAAAAAAAATTAAATGCATTCCAGGTAAATGCTGCCTATTGATCCAAATTAAGAGTTTG CTTTGTCTGTCTTTTAAATATGATTTGAAACACAGAATTGTGTTTCTTCTCATAAATTTATATTATATTGTTGCTTTTTA GTGTGGGACATTTAGACTTTTTTTCTTTGAAGGCGGGACATTTAGTCTTTTCTATTGTGTGTATTGTTAAATACTATACT TTGTTTGCATTTTTTGTCAGTTGTGGTTTTTAACTTTTGCCTTTACTGGTTAGATCTTGTATTCTCTCTTTCATTGTAAG TATGGACCTCCCATTATATGCCTTCAAAGTTGGATATGACAATATGACATTATTTCAGTCTTCTTCGTGTCGAACTATGC ATTTATGAATAGAGATAATCTTTATCTAGTTAAGCATTTATGATGTGCTCCTGTATGAGTGAGTTAATTGCTTTTTTACA TAAAAAGGAACAACGCACTTATGTTTTCTAGTGTCTACCATCCATATGTTTCTTGCACTTATGTTTGTTGTCATTTTCCT GTACCATATGAGAACACGTCAAGAATTTTTTCCCTCTTTCTGATTCCTAATCAGAATTCATTTTTTGGACCATATGGCAA GAGATTAATTATGGGGGGCTGCTTTGTATGACAATGGGGGATGAATCAGAATTGAAATCATGTAGATATATTGTGAAATT AATATACTTTTGAGTGCTTAACATTACGTGGTTTACACATTAAATAACACTTTTCCCCCTTGCCATAATGCCATCATTGC AGGTACTGACTGGACATAGAAATGAAGTTTGGTTTGTTCAGTTTTCTAATAATGGAGAGTATCTAGCTTCTTCATCCTAT GATTGTACAGCCATCATATGGAAGGTATCATGTTATTGTCATTAAAAGCAGCATACATTTTTGCATTAGTTGATTTTTCC AATATTAATGTCTTAATTTTATTGGGCATTGATTAAACTTCTGTGTTTGAGCTCACAATATGCATGACAAAAGTTTAGCT GGGAAATTGATACATGTCTATTGTATAATCAGATACATATTCTGATAGGAACTCAAGGTTTGGGGTTAGTTAGTTAGTTA GTTATACTTAGTGAGTTAGTTAGAATGTTGTTGAGGCATTTAGCCTATAAATAACAGACATTAGAGAGTTAGGGGTATCT TTGTATTCAGTTAGGAATTGGGTTTAGAGAGAAAAGTGGTTCTCTTTCTAGGGTTAGAGAGGGTGTTTGGTATCCCTTTC TCTTGTATCTTTCCCCTAGTTTCCAATTGGGAATTAGGTTTTCTATCAATAAAAATCAGGTTTCCATCATTGGTATCAGA GCACCATCCTGGTGCCTGAACCACGACAATCCTGGGCTGCACAAGAGGAAAGGAGAAGAATGGCAAGTTCAGAAGTTGTT CAGGAAAACCAAGAATTGAGAGCGAGGATGGAGTCAGTGGAGGCTATCACCGGGAAGAACGAGTTCGTACTAGCGGCGGT GGCGAAGAAAATGGGGGTGCGACTTGTTGCAAATCCTGATCTTGAGAAAGAAATCTCAAGATTGGAGAACAAATTGCGAG AACTTGAAGAGAGGAGAAAACAGAGGGAACAAGAAAGAAGAGAAGCAGAGGCATCGCAGATGGAATCTGATGTCAGGTCG GAGGAAAAGTTAGCGGCAGCAAAGGAGATTCTGGAGAAACCAGAGGTTGCAGTGATGGCTAACCAATCGACACCCGTTGA TCATGAAGCGGCAGAGACAGAGCGTGTAGCGGCGGCGGTATCGCCAGCGAATTTGGAAACCGCGACGGAGACAGTTTCAG CAGTGGTGAAGGCGACTCAGAAATCCATTCTTGAAACAGAGAGAGAATCAGAAACGGCAGCGGAAGAAGACGCTACGGTG GATGAGCAAGCGTATGAAACAGAGGGGGTTTTCACCTCTGAGATGAAGCAACTCAATCTTGAAGTAGCGGAAGACAATCG GGTAACAGAGGAGGAGAGGGAGAAGGAATTGGGGTCGACATCAATGGCGGAGAAAAACCTGACCTTTGATACAGAGGTTG AAGGAAGAGATGGTTGGGAGAAGTTTGGATGGAAGATCCATCAGCAACCGATGATGGAGAAACACATCCATCTCCGGCCA CCGACGCTGAAAGGAGGAAAGGCCAAGGTGTCGCCAGTGGCGGAGACCCGACAACCACAGAAGATGCAATCGCTTCGACG GCCGCCACCGAAACCGCCGCACGTCGGGGTGAGAGTGTTGCATGCAGGAGGATCGTTGAATCGACATCCTTGCAGGCAGG AGGAGGCAAAATGGTCACTGGCGAAACCACCGGATTTGTTTGGTCCGCCGGGTTTATTGGGAGGTGACAGTTCCGACTTG GCGCTGCTGGCTCAGTCGTGCTGTGAAGGAGGTGGTGTGATAGTGACATTGCATTGGCTCCCAAGTGCCAAAAACCTTAT GCGGTGGCCACTGAAGGTAGACACGAGGCAGGAAGAAAAAGTGGTGCTGGCAACACATGACACAAGCAAAGACAAGTGTC CCACTGGAGTGATTTTCTACAACAGCAGCAACGTTTATGAAATGGGAAAAAGGTATGCACATGTTTTTGGTAGATTGGGC CAAGCACAACTTAGGATAAAAAGAGGGTCTGTTGATTGTATTGTTAAATGGGTTGCTATCCAACTTCTTACTGGATTGGG GAACATTGTGGAAGACAAATTTCTGAGAATAATAGGCCTTGCATGTTTCAATTGGGAAATCAAGAGAAAGCTACAAAGAG GGTTTATTCAAACCTGGAATTGTTTTCCCAATTACTGTTTGTTCCTAATAGCTGGGAGTCTTACCAAAGTTCCAGATTTT TCAGTGTGTCAGGGTGCTGTTCTGAATGTAATGGGATTCTGTATCTGGTGTATCAAAGCAAGCTTGAAGGAGATGGGTGA GCTATGTGAGTTCCTTCTGATGTGTCAAAATGGTTTGGTAGCAACCCAGGTCAATGTTGAAAATTTGACAGCAGGAGAGA ATTATCACTACTTGGGCTCATGGGGCCAAGACCAGCTTGACATGGATTTTGGAAATCAAAGTAGAAAAACTGAATTGTGT TTGGACTCCATTGGGTATCAAATTGATTTGGAAAATATTAGTTTGGAGGGGTTTTCTTTTGATGATTTCTATGGCTTGCT ATTCCAATTGGTGGTGGTCACCAATTCATCCATGGTTGTGATTATCTGCTTCATGCACTGGGATCCAGGAGGAAACATGA ATTGTCACTTTTGGATCTTTGGCATAGCTGTATTTGAGATTGTTCATTGTTGTAGCTTGTATTTTGTTACAGCCACAATT GCAAGGGAAGGGGAGGATTGTGCTATTTGTATTCAACCCATACAGTTGCAACCTTCTGAATTAATGTCATTTGAGAAGAC ATCCAATCAGCATTTGTTGGCTAGTTTTGGGAAGATACCTGCCACTTCTTTCATGTTGGGATTTGCTTTTAAAAATGCTG CAACAGTGCTATTTCAATCTCTTTGCATCAACGGGAATTTCTGCTACTTGTTTTTCCAGCAATGGTACTTATGCCACATT AGTTTCAGCAGGACAGTGAAGATTTCCCCCAAGTCATACATGTTTTGGACTTTTTGCTTTCGGCTATGGGCCCTGGGTGG AAGATGTGATTACCACTCTTGGGAGTTTGGAATAGCAGTTCAGGAATTTGTCACTTTTGTATAGTAGGCCTACTTGTTCA CTGTTTTAGTTTGCTTTTTGTTCCTCACCTTGAGGACAAGGTGAATTTTCAGGGGGGGGGGGAGTATTGATAGGAACTCA AGGTTTGGGGTTAGTTAGTTATACTTAGTGAGTTAGTTAGAATGTTGTTGAGGCATTTAGCCTATAAATAACAGACATTA GAGAGTTAGGGGTATCTTTGTATTCAGTTAGGAATTGGGTTTAGAGAGAGAAGTGGTTCTCTTTCTAGGGTTAGAGAGGG TGTTTGGTATCCCTTTCTCTTGTATCTTTCCCCTAGTTTCCAATTGGGAATTAGGTTTTCTATCAATAAAAATCAGGTTT CCATCATATTCCCTACAATTTTTAGCGGAATTCATGAGTTTTCAACTGCTAGGTTCTTTTGATTAGTTATGTCATTAGCA TGAAAAAATTTGGACTGAAAGAGACATGCAAATTTAATGGGCATGGTGTATGTAGATCCAAAGAAGTACTTCTAAGCTAA TAAACAGTCAGGGGAACATCAAATGATTAAGGAAAAGTACATATTTTTAATAGAATGATATCTTTGATTCCTCTTCCCTC AAAATCTAGTTTTTGATCGAGCTAAATGACGTAAAGTGATCCATATAGCCGACCTCACTTGGTGAGATAAAGCTTTTATT GTTATTGATGTTTAGATTTATGAGCTTAAGAGAGAAAAGGGATTGATTTCCTAGAAAGATTTTTCTTATAGAAAGAAGAG TTGGAGTTCATTATCTTGTCTGGAAGTTAATTGAAATAAAAAAACTAAATGATGTCTCTTCTTTGGTTTAGGTCTTAATA TGTATGGGTAAATTATGCTAGGTTTGTTTCAAAGGAGGGGAGGGGGCCTTTTAATTTTTATCATGTTTTGTTAAGAGAAG GGAAGGGAGGGGAAGGCGGGGTAATCCTTGTCTTGTTTGATTCATTACGGAAGGGGAGAGATTCTAAAACTAATTTTCTT ATGTTGCTCTTACATTCAATAATTTTGGGTTTCAAAATACTAGTAAGGACATTCTAGTCATATAATTTATCTCCCCTCAA AATCCCTCCACTTTTGGAGGGGAGCCAAAATTAAGTCAGGAGGGGCTTTGGTCCCCTCCTCTCTTGTCCTAAAGTTTGAA GCGACCGATATAGCTTTAAAAAAACTGCTCCCCTGCCCTGCCCTCAAATCCCCTCAACATAAGCACTATATTAATGAATG TTAGGGTCAGTCAGCCAGGAAGATAATCTGGAAATGGCTAAAAATATAGGTCTCCGTTGTTTGGTTACATGCTACTGCTA ACCTGACTCCCAAGTCCCAACTCATATTCCTTTAGCCTAGTTACTGGACTGGAAGGTCATACAAGAATCCTTGCCAAAGT CCTAGTTACAACATAAAAAGTGAATGCATAATTAATAATGGAAGAAAATAGTCGTATACAAAATGCAAGTTCTAAAATAA TAGGAGTATAATATGCCGAATATTTGTTGATTGTTGAATTAATGTCTGAATTCTAAAACTGGAATTGGTTTTTGAAGTTT GTCTCCTTTCTTCTATTGGTCTAGGCTTGACCGAGCAGTTGAATTCATTATGGACTGTACCAAGTTTCTTCCTGGGAAAA TGGCTTGTGTCCAAGGTAGTCAATATAACATGGCATGTTTTGTGAGATTAAGTGCTCATCAGAAATTATCTGGGTTTCAA AGAATTAAATTGTGTGCATATATATATATATATACATATATATATATATTTGTTTTGAAGACTTCCGGAGAATACTCTAA GATGTTTGACAGTTCAACTGTTGAGGAATGTGAATTTTTTTAATATCCTGCAACCTTGACTGCAATAGATCAAATTTGAG TTCTGCCAAACTATATCAATTTAGTAGTTGATAAGCAAGATAAGAAAAATGTTTAAAATTTTACTCTCGATTTTTAGTTT TATGCTGTAAGTTTGAATGTGGAAATGGAGAGACATTATAGTAATTTGATTTCTAAAGTCTTGAAGTACTTGTGCCAGGT GCAAGAAGATGGGAAATTGACATTGAAACACACACTTTTTGGTCACCAAAGTGCTGTATCTTTTGTGGCATGGAGTCCTG ACGACACCAAGTTGCTCACATGCGGGAACAAAGAAGTTCTGAAGCTGTGGGATGTTGAAACAGGTACATGCAAGCATACA TTTGGGAATCAAGGCTTTGTTGTCAGCTCATGTGCCTGGTTCCCCAACTCAAAGCAGTTTGTGTGTGGCAGTTTCGACCC TGAAAAGGGCATCTGCATGTGGGATTGTGAAGGAAACGAGATGAGATCATGGAGAGGAATGAGGATGCCCAAAGTTGTAG ACATTGCTGTTACTCCAGACGGCGAGTATCTTATCAGCATATTCTTGGATAAAGAAATTCGGATTTTGCATCTGAGAACC AATGCTGAATGCGTCATTTCGGAGGAGCACCCGATCACGTCTATTTCAGTTTCTGGAGATAGCAAGTTCTTCATTGTGAA TCTGAACAGCCAGGAGATTCATATGTGGGATGTGGCCGGCAAATGGGATAAACCATTGAGGTACACGGGCCATAAGCAGT GCCAATATGTGATCAGGTCGTGTTTTGGTGGATTGGACAGCGCGTTTATTGCCAGTGGCAGCGAGAATTCTCAGGTAGTT TCCTTTTCTGTGTACTATTTAGTAGCAGCTAGTTATAGAAATTACTTAACCATCAATTTACACCGCAATTTAATTTCTAA AATAAAATAAAATCTTACACCGCAATCTACACTCTGCATTGCACCTCAAAATTGATCTCATGCAGGTATACATTTGGAAT TCTGGGAGCCCGAGGCCAATAGAGGTTTTATCTGGGCACTCCCTGACTGTAAATTGTGTGAGCTGGAATCCAAGAAGGCC ACAAATGTTAGCATCTGCAAGTGACGATCATACAATTCGCATATGGGGACCCAGCTTGTAGAAAAGAACGTAACTTGCAT AGATCTGTTGAACAGAAATGCATTCCATATCAAGGCTACTGA
CDS sequence (LotjaGi5g1v0151700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGTACAGCCATCATATGGAAGACTTCCGGAGAATACTCTAAGATGTTTGACAGTTCAACTGTTGAGGAATGTGAA TTTTTTTATCTTGAAGTACTTGTGCCAGGTGCAAGAAGATGGGAAATTGACATTGAAACACACACTTTTTGGTCACCAAA GTGCTGTATCTTTTGTGGCATGGAGTCCTGACGACACCAAGTTGCTCACATGCGGGAACAAAGAAGTTCTGAAGCTGTGG GATGTTGAAACAGGTACATGCAAGCATACATTTGGGAATCAAGGCTTTGTTGTCAGCTCATGTGCCTGGTTCCCCAACTC AAAGCAGTTTGTGTGTGGCAGTTTCGACCCTGAAAAGGGCATCTGCATGTGGGATTGTGAAGGAAACGAGATGAGATCAT GGAGAGGAATGAGGATGCCCAAAGTTGTAGACATTGCTGTTACTCCAGACGGCGAGTATCTTATCAGCATATTCTTGGAT AAAGAAATTCGGATTTTGCATCTGAGAACCAATGCTGAATGCGTCATTTCGGAGGAGCACCCGATCACGTCTATTTCAGT TTCTGGAGATAGCAAGTTCTTCATTGTGAATCTGAACAGCCAGGAGATTCATATGTGGGATGTGGCCGGCAAATGGGATA AACCATTGAGGTACACGGGCCATAAGCAGTGCCAATATGTGATCAGGTCGTGTTTTGGTGGATTGGACAGCGCGTTTATT GCCAGTGGCAGCGAGAATTCTCAGGTATACATTTGGAATTCTGGGAGCCCGAGGCCAATAGAGGTTTTATCTGGGCACTC CCTGACTGTAAATTGTGTGAGCTGGAATCCAAGAAGGCCACAAATGTTAGCATCTGCAAGTGACGATCATACAATTCGCA TATGGGGACCCAGCTTGTAG
Protein sequence (LotjaGi5g1v0151700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIVQPSYGRLPENTLRCLTVQLLRNVNFFILKYLCQVQEDGKLTLKHTLFGHQSAVSFVAWSPDDTKLLTCGNKEVLKLW DVETGTCKHTFGNQGFVVSSCAWFPNSKQFVCGSFDPEKGICMWDCEGNEMRSWRGMRMPKVVDIAVTPDGEYLISIFLD KEIRILHLRTNAECVISEEHPITSISVSGDSKFFIVNLNSQEIHMWDVAGKWDKPLRYTGHKQCQYVIRSCFGGLDSAFI ASGSENSQVYIWNSGSPRPIEVLSGHSLTVNCVSWNPRRPQMLASASDDHTIRIWGPSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 30 | 296 | 267 | 1.1E-56 | ||
| PANTHER | 33 | 298 | 266 | 4.6E-107 | – | |
| SMART | 42 | 81 | 40 | 1.2E-7 | ||
| SUPERFAMILY | 43 | 295 | 253 | 1.45E-54 | ||
| CDD | 45 | 295 | 251 | 5.30943E-41 | – | |
| Pfam | 46 | 81 | 36 | 4.3E-4 | ||
| ProSiteProfiles | 49 | 299 | 251 | 27.948 | ||
| ProSiteProfiles | 49 | 90 | 42 | 14.352 | ||
| SMART | 84 | 125 | 42 | 0.012 | ||
| Pfam | 85 | 124 | 40 | 0.042 | ||
| SMART | 127 | 167 | 41 | 4.8 | ||
| SMART | 169 | 207 | 39 | 5.1 | ||
| SMART | 211 | 253 | 43 | 2.3 | ||
| Pfam | 218 | 253 | 36 | 0.014 | ||
| ProSitePatterns | 240 | 254 | 15 | - | ||
| SMART | 256 | 296 | 41 | 3.1E-10 | ||
| Pfam | 259 | 295 | 37 | 6.0E-7 | ||
| ProSiteProfiles | 263 | 299 | 37 | 14.084 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0151700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…