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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0154200 |
| Transcript ID | LotjaGi5g1v0154200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase-like protein; TAIR: AT5G44030.1 cellulose synthase A4; Swiss-Prot: sp|Q84JA6|CESA4_ARATH Cellulose synthase A catalytic subunit 4 [UDP]-forming]; TrEMBL-Plants: tr|A0A072VWL8|A0A072VWL8_MEDTR Cellulose synthase-like protein; Found in the gene: LotjaGi5g1v0154200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:40078955..40083087) extracted from Lotus japonicus Gifu genome v1.2.
AGCAATGACCAAGGAGAAGATGACTTCCTGTAACTTGTCTTCTCTCAAACACTCCATTAGTAGATTGAAAAACTAATAAT CAATGCATATAACATTTTGCTTTTTCTTCTTTGCTTGTAAATAAAAACTCAAATTACCCAGGTTTGAAAATTCTTCTACA GTTGATTGTGAATTCAAAATCAATTCTAGGCTGGGAAGAAGCTTTTGTGACTAACTTCAGAGTCGCAGAATTGATTCTGA GGAAAGATAAACTGATCCAAACATGCTATGTTTCTTATCTCCTTATGTTATCCTTGCAGTTTGGCTGAATCAAGGCAACC ATTATGGCGCAAAGTCGCAGTATCTTCAGGCCTAGTCAACCCGTATCGCATAGTGATAGTCATGCGTTTTGTGGTCCTTG TTTTCTTCTTCCACTACCGCATCTCAACTCCAGTACACGATGCACTGGCCTTATGGATAATCACGGTGGTCTGCGAAATC TGGCTCGCTTTGTCTTGGCTAGTAGACCAGCTCCCTAAGTGGTTCCCCATCACCCGTGTAACTTACCTGGAGCGCTTGTC CCTGAGGTTCGAGCGCGAAGGGGAGCCAAATCTTCTACCTTCGGTCGATGTCTTTGTTACCACTGCAGACCCTTCGAAGG AACCGCCCATTGTAACAGCCAACACAGTTCTATCAGTCTTGTCTGTTGACTATCCTGTTGACAAGGTTTGCTGCTATGTC TCAGATGACAGTGCCTCTATGCTTCTTTTTGATACCTTGTCAGCAACTGCTGAGTTTGCAAGAATCTGGGTTCCTTTTTG TAACAAGTATAAGATTGAGCCTCGTGCACCTGAGTTCTATTTCTCTCAGAAAGTTGATTACTTGAAAGATAAGGTTCACC CCACATTTGTAAAGGATCGCAGGGCCATGAAGGTGAAAATTACATGGATAACTATATATGTTAGTTTTAATGTTGTTTTC TGTTATGCATGTTAGACTTAAGACATTTTACAAGTCACTTTTGCAGAGAGAGTATGAAGAATTCAAGGTGAAAATTAATG TACTGGTTGCAAAAGCTCAGAAAAAACCAGAAGAGGGGTGGGTGATGCAAGATGGCAACCCATGGCCTGGGAACAACACT GACAATCATCCAGCAATGGTTCAGGTTTGCCAATTGCATTATTTTGATGTGCTTTTTTATTTTGATTCATTGACAAATGT GAATACTTAATGATTCAAGTCCTCTTGGATCAAAATACTAATGAAACTAGGGGGAAAATTCAGTCTTAAAAATTGATATC TATGAACTTTGGATAATGTCAATAAACCAAGAACTGAAAAATATATGGACTTTCCTCTGTAGGTGAGTCTGGGAAGTGCT GGTGCACTGGACAGTGAAGGCAGAGAACTGCCTCGGTTTGTGTATGTTGCACGGGAGAAACGTCCGCGCTATCAAGACCA CAGGAAAGCCGGTGCCATGAATTCTCTGGTATGTAACTTAAACTTCAAGTATTTCGTTCATTTCCAACTAGATATGAGAA AGGTTACTATAAAAAACTGTTTATAAACTCTTACAATGCTTTATTTCCTTAAAAGGTTCGAGTTTCTGCTGTGCTGAGCA ATGCACCATTTGTGTTGAATCTGGATTGTGATCAATACATCAATAACAGCAAGGCACTTAGAGAAGCTATGTGCTTTTTA ATGGATCCTCAACTTGGAAAGAAGCTATCTTTTGTACAATTTCCGCGAAGGTTCGATGCCATCGATTCCAATGATCGATA TGCAAACCGGAACACTGTATTCTTTGATGTAAGGGACATTTTTCTGAACTCCAGTACAAGATGCAGTTCTATTAACTGGT TTTCTAACTCCTACCTTCAATTTGGCTTGCTTTGTAGATCACCATGAAATGCCTTGATGGGGTTCAAGGTCCAATGTATG TTGGTTCTGGATGTGTGTTCAACAGGCAGGCATTGTACGGCTATAAGCCACCATCTGAGAAAACACCAAAGGAAAGTTAT GGTGGCTCTCATTCCACATTTGATATTGAAGAGATTGATGAAGGGCCTGAAGGATTTGATGAGAAAGAGCAATCATCCTT CTTGTCCCTGAAAGTTGTCAAGAAAAGATTTGGAATGTCTCCGGTTTTCATTGCTTCAGCTTTGATGGAAGATGGTGGAC TTCCAAAAGGCACCAATACCAGATTACTGATCAAGGAAGCCATTCATGTTATAAGCTGTGGCTATGAAGAGAAAACTGAA TGGGGCAAAGAGGTAATCCAGTTAATATAAATATCTCCTACTTTCTAGCATTGTGTACTTGGAATTTCATGATTGCCAAG TGCCCGTTTGGAAACTCGTTTGAAAACAAAGGTGAAGCCAAAATCATGGTGGTCAGAAGCAAAATCTAGATGGAATTTCA TGATTTTGGCTTCACCATGGTTTCCAAACGAGTTCCCAAACATGCACCAATGAAGCCATGTTGATATTGATATTTCTTTC TTTGCAGATTGGGTGGCTTTATGGCTCAGTCACAGAAGACATCTTAACCGGGTTTAACATGCATTGCAGAGGATGGAAAT CAGTGTACTGCATGCCTAAGAGAGCAGCTTTTAAAGGATCTGCTCCTATAAATCTATCAGACAGATTACACCAAGTTCTG AAATGGGCTTTGGGTTCCACTGAGATTTTCTTTAGTGGCTATTGCCCTTTGTGGTATGGATATAGTGGAAAACTGAAGTT GCTGCAGAGGCTAGCTTACACTAATGCCATTGTTTATCCATTCACTTCCATCCCTCTGCTGATATACTGTACAATTCCAG CTATCTGTCTTCTGACTGGAAAGACCATCATCCCCGCTGTAAGTGCATGATAATAATTTTTTACATTAATTAACTAGAAT GCTAAAATACTCAGGCTGCCTCATTACTATTGATTAGAACCTTGGAAGAACCATACCAAAAAACTACTGTAGTTGGAGAG TCCAAGACCTTATAAACCATATATTAGAATCTCATACTTCCAATGTGAGACTCAAGTCATACCTTGCAGTTGGATCCTAA CATCCTACCACGCTCTGCAGACTCAACGCCCATGTGGGCTGGCTGTGCACTAGTTCCTTGACTAGTCCTGGACTAACATT GCGATGCCAGTGTCTGATACTAATTGACATGAACATTGGGAGAACCATACTACTAAAGCTATTAGAATTTCATACTTCCA ATGTAGGACTCAAGTCTTGCAATTGGATCCTAACAACTATGTCCAATGCACCACATGATTTCTTAAGCCATCCTCCCATT CTCATGTTGAGAATGTGACGGAGCTAAATGTAAGATAAGCCTAATACGACTTTTAATGTATTTTGGTTAGTGAGAACAAC CAGGGCACTGAAGTAGCTAGGTTTATATTTTCTGGGAAATTTAACCAGAAGCCAATGATAATTTCTTGTGAAGAGTACGT ATAACTCAATTTTTTTAGCTCTAATTGACAGCTTCTTTTGGAAGAGCAAAAAAGAGGGGAAAACTGTTATGATGTTAGAG TCATGTCTTATAACGAAAGTTCTCTTCTGTGCAGATGACAAACCTTGCTAGCATTTGGTTAATGGCTCTCTTTATCTCCA TGATTTTGACTTGTATGCTTGAGCTTCGTTGGAGTGGGGTTAGCATTCAGGACTGGTGGCGCAACGAACAATTCTGGATC ATTGGAGGTGTCTCTGCACATCTTTTTGCTGTGTTTCAAGGTCTCCTTAAAGTTGGTGGAGTAGACAATAAAGTCATTGT AAGAACAAAATCAACAGATGACACTGTATTGGGACAGTTGCATCTCTTCAAGTGGACCACTCTTCTAATCCCACCAACAA GTCTTGTAATCTTGAATATGGTGGGAATTGTGGCTGGACTCTCTAGTGCCATTAACAAAGGCTATGCCTCATGGGGACCT TTATTTGGGAAGCTTTTTTTCTCCTTCTGGGTCATTGTGCACTTGTATCCTTTCCTCAAAGGTCTAATGGGAAGGCAAAA CAGAACACCTACTATAGTAGTTCTCTGGTCAACACTTCTAGCATTAGTTTTCTCAATGATTTGGGTGAGAATTGATTTTT TCTTGCCCAAGCAAACAGGTCCAGTACTCAAACAATGTGGGATAGAGTGCTAA
CDS sequence (LotjaGi5g1v0154200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCAAGGAGAAGATGACTTCCTGTAACTTGTCTTCTCTCAAACACTCCATTAATGCTATGTTTCTTATCTCCTTATG TTATCCTTGCAGTTTGGCTGAATCAAGGCAACCATTATGGCGCAAAGTCGCAGTATCTTCAGGCCTAGTCAACCCGTATC GCATAGTGATAGTCATGCGTTTTGTGGTCCTTGTTTTCTTCTTCCACTACCGCATCTCAACTCCAGTACACGATGCACTG GCCTTATGGATAATCACGGTGGTCTGCGAAATCTGGCTCGCTTTGTCTTGGCTAGTAGACCAGCTCCCTAAGTGGTTCCC CATCACCCGTGTAACTTACCTGGAGCGCTTGTCCCTGAGGTTCGAGCGCGAAGGGGAGCCAAATCTTCTACCTTCGGTCG ATGTCTTTGTTACCACTGCAGACCCTTCGAAGGAACCGCCCATTGTAACAGCCAACACAGTTCTATCAGTCTTGTCTGTT GACTATCCTGTTGACAAGGTTTGCTGCTATGTCTCAGATGACAGTGCCTCTATGCTTCTTTTTGATACCTTGTCAGCAAC TGCTGAGTTTGCAAGAATCTGGGTTCCTTTTTGTAACAAGTATAAGATTGAGCCTCGTGCACCTGAGTTCTATTTCTCTC AGAAAGTTGATTACTTGAAAGATAAGGTTCACCCCACATTTGTAAAGGATCGCAGGGCCATGAAGAGAGAGTATGAAGAA TTCAAGGTGAAAATTAATGTACTGGTTGCAAAAGCTCAGAAAAAACCAGAAGAGGGGTGGGTGATGCAAGATGGCAACCC ATGGCCTGGGAACAACACTGACAATCATCCAGCAATGGTTCAGGTGAGTCTGGGAAGTGCTGGTGCACTGGACAGTGAAG GCAGAGAACTGCCTCGGTTTGTGTATGTTGCACGGGAGAAACGTCCGCGCTATCAAGACCACAGGAAAGCCGGTGCCATG AATTCTCTGGTTCGAGTTTCTGCTGTGCTGAGCAATGCACCATTTGTGTTGAATCTGGATTGTGATCAATACATCAATAA CAGCAAGGCACTTAGAGAAGCTATGTGCTTTTTAATGGATCCTCAACTTGGAAAGAAGCTATCTTTTGTACAATTTCCGC GAAGGTTCGATGCCATCGATTCCAATGATCGATATGCAAACCGGAACACTGTATTCTTTGATATCACCATGAAATGCCTT GATGGGGTTCAAGGTCCAATGTATGTTGGTTCTGGATGTGTGTTCAACAGGCAGGCATTGTACGGCTATAAGCCACCATC TGAGAAAACACCAAAGGAAAGTTATGGTGGCTCTCATTCCACATTTGATATTGAAGAGATTGATGAAGGGCCTGAAGGAT TTGATGAGAAAGAGCAATCATCCTTCTTGTCCCTGAAAGTTGTCAAGAAAAGATTTGGAATGTCTCCGGTTTTCATTGCT TCAGCTTTGATGGAAGATGGTGGACTTCCAAAAGGCACCAATACCAGATTACTGATCAAGGAAGCCATTCATGTTATAAG CTGTGGCTATGAAGAGAAAACTGAATGGGGCAAAGAGATTGGGTGGCTTTATGGCTCAGTCACAGAAGACATCTTAACCG GGTTTAACATGCATTGCAGAGGATGGAAATCAGTGTACTGCATGCCTAAGAGAGCAGCTTTTAAAGGATCTGCTCCTATA AATCTATCAGACAGATTACACCAAGTTCTGAAATGGGCTTTGGGTTCCACTGAGATTTTCTTTAGTGGCTATTGCCCTTT GTGGTATGGATATAGTGGAAAACTGAAGTTGCTGCAGAGGCTAGCTTACACTAATGCCATTGTTTATCCATTCACTTCCA TCCCTCTGCTGATATACTGTACAATTCCAGCTATCTGTCTTCTGACTGGAAAGACCATCATCCCCGCTATGACAAACCTT GCTAGCATTTGGTTAATGGCTCTCTTTATCTCCATGATTTTGACTTGTATGCTTGAGCTTCGTTGGAGTGGGGTTAGCAT TCAGGACTGGTGGCGCAACGAACAATTCTGGATCATTGGAGGTGTCTCTGCACATCTTTTTGCTGTGTTTCAAGGTCTCC TTAAAGTTGGTGGAGTAGACAATAAAGTCATTGTAAGAACAAAATCAACAGATGACACTGTATTGGGACAGTTGCATCTC TTCAAGTGGACCACTCTTCTAATCCCACCAACAAGTCTTGTAATCTTGAATATGGTGGGAATTGTGGCTGGACTCTCTAG TGCCATTAACAAAGGCTATGCCTCATGGGGACCTTTATTTGGGAAGCTTTTTTTCTCCTTCTGGGTCATTGTGCACTTGT ATCCTTTCCTCAAAGGTCTAATGGGAAGGCAAAACAGAACACCTACTATAGTAGTTCTCTGGTCAACACTTCTAGCATTA GTTTTCTCAATGATTTGGGTGAGAATTGATTTTTTCTTGCCCAAGCAAACAGGTCCAGTACTCAAACAATGTGGGATAGA GTGCTAA
Protein sequence (LotjaGi5g1v0154200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTKEKMTSCNLSSLKHSINAMFLISLCYPCSLAESRQPLWRKVAVSSGLVNPYRIVIVMRFVVLVFFFHYRISTPVHDAL ALWIITVVCEIWLALSWLVDQLPKWFPITRVTYLERLSLRFEREGEPNLLPSVDVFVTTADPSKEPPIVTANTVLSVLSV DYPVDKVCCYVSDDSASMLLFDTLSATAEFARIWVPFCNKYKIEPRAPEFYFSQKVDYLKDKVHPTFVKDRRAMKREYEE FKVKINVLVAKAQKKPEEGWVMQDGNPWPGNNTDNHPAMVQVSLGSAGALDSEGRELPRFVYVAREKRPRYQDHRKAGAM NSLVRVSAVLSNAPFVLNLDCDQYINNSKALREAMCFLMDPQLGKKLSFVQFPRRFDAIDSNDRYANRNTVFFDITMKCL DGVQGPMYVGSGCVFNRQALYGYKPPSEKTPKESYGGSHSTFDIEEIDEGPEGFDEKEQSSFLSLKVVKKRFGMSPVFIA SALMEDGGLPKGTNTRLLIKEAIHVISCGYEEKTEWGKEIGWLYGSVTEDILTGFNMHCRGWKSVYCMPKRAAFKGSAPI NLSDRLHQVLKWALGSTEIFFSGYCPLWYGYSGKLKLLQRLAYTNAIVYPFTSIPLLIYCTIPAICLLTGKTIIPAMTNL ASIWLMALFISMILTCMLELRWSGVSIQDWWRNEQFWIIGGVSAHLFAVFQGLLKVGGVDNKVIVRTKSTDDTVLGQLHL FKWTTLLIPPTSLVILNMVGIVAGLSSAINKGYASWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVLWSTLLAL VFSMIWVRIDFFLPKQTGPVLKQCGIEC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 33 | 33 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 20 | 28 | 9 | - | – | |
| Phobius | 29 | 33 | 5 | - | – | |
| PANTHER | 34 | 826 | 793 | 0.0 | – | |
| Phobius | 34 | 48 | 15 | - | – | |
| PANTHER | 34 | 826 | 793 | 0.0 | – | |
| Phobius | 49 | 68 | 20 | - | – | |
| TMHMM | 50 | 72 | 23 | - | – | |
| Phobius | 69 | 79 | 11 | - | – | |
| Phobius | 80 | 99 | 20 | - | – | |
| TMHMM | 82 | 99 | 18 | - | – | |
| Phobius | 100 | 606 | 507 | - | – | |
| Pfam | 133 | 433 | 301 | 1.8E-168 | ||
| SUPERFAMILY | 148 | 632 | 485 | 8.58E-8 | ||
| Gene3D | 238 | 430 | 193 | 2.4E-13 | ||
| Pfam | 439 | 821 | 383 | 1.0E-185 | ||
| TMHMM | 569 | 591 | 23 | - | – | |
| TMHMM | 606 | 628 | 23 | - | – | |
| Phobius | 607 | 628 | 22 | - | – | |
| Phobius | 629 | 639 | 11 | - | – | |
| TMHMM | 640 | 662 | 23 | - | – | |
| Phobius | 640 | 663 | 24 | - | – | |
| Phobius | 664 | 674 | 11 | - | – | |
| Phobius | 675 | 694 | 20 | - | – | |
| TMHMM | 677 | 699 | 23 | - | – | |
| Phobius | 695 | 725 | 31 | - | – | |
| TMHMM | 723 | 745 | 23 | - | – | |
| Phobius | 726 | 749 | 24 | - | – | |
| Phobius | 750 | 754 | 5 | - | – | |
| Phobius | 755 | 777 | 23 | - | – | |
| TMHMM | 755 | 777 | 23 | - | – | |
| Phobius | 778 | 788 | 11 | - | – | |
| Phobius | 789 | 809 | 21 | - | – | |
| TMHMM | 790 | 812 | 23 | - | – | |
| Phobius | 810 | 828 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of LotjaGi5g1v0154200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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