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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0154200 |
| Transcript ID | LotjaGi5g1v0154200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase-like protein; TAIR: AT5G44030.2 cellulose synthase A4; Swiss-Prot: sp|Q84JA6|CESA4_ARATH Cellulose synthase A catalytic subunit 4 [UDP]-forming]; TrEMBL-Plants: tr|A0A072VWL8|A0A072VWL8_MEDTR Cellulose synthase-like protein; Found in the gene: LotjaGi5g1v0154200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:40080838..40083087) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAATGCCTTGATGGGGTTCAAGGTCCAATGTATGTTGGTTCTGGATGTGTGTTCAACAGGCAGGCATTGTACGGCTA TAAGCCACCATCTGAGAAAACACCAAAGGAAAGTTATGGTGGCTCTCATTCCACATTTGATATTGAAGAGATTGATGAAG GGCCTGAAGGATTTGATGAGAAAGAGCAATCATCCTTCTTGTCCCTGAAAGTTGTCAAGAAAAGATTTGGAATGTCTCCG GTTTTCATTGCTTCAGCTTTGATGGAAGATGGTGGACTTCCAAAAGGCACCAATACCAGATTACTGATCAAGGAAGCCAT TCATGTTATAAGCTGTGGCTATGAAGAGAAAACTGAATGGGGCAAAGAGGTAATCCAGTTAATATAAATATCTCCTACTT TCTAGCATTGTGTACTTGGAATTTCATGATTGCCAAGTGCCCGTTTGGAAACTCGTTTGAAAACAAAGGTGAAGCCAAAA TCATGGTGGTCAGAAGCAAAATCTAGATGGAATTTCATGATTTTGGCTTCACCATGGTTTCCAAACGAGTTCCCAAACAT GCACCAATGAAGCCATGTTGATATTGATATTTCTTTCTTTGCAGATTGGGTGGCTTTATGGCTCAGTCACAGAAGACATC TTAACCGGGTTTAACATGCATTGCAGAGGATGGAAATCAGTGTACTGCATGCCTAAGAGAGCAGCTTTTAAAGGATCTGC TCCTATAAATCTATCAGACAGATTACACCAAGTTCTGAAATGGGCTTTGGGTTCCACTGAGATTTTCTTTAGTGGCTATT GCCCTTTGTGGTATGGATATAGTGGAAAACTGAAGTTGCTGCAGAGGCTAGCTTACACTAATGCCATTGTTTATCCATTC ACTTCCATCCCTCTGCTGATATACTGTACAATTCCAGCTATCTGTCTTCTGACTGGAAAGACCATCATCCCCGCTGTAAG TGCATGATAATAATTTTTTACATTAATTAACTAGAATGCTAAAATACTCAGGCTGCCTCATTACTATTGATTAGAACCTT GGAAGAACCATACCAAAAAACTACTGTAGTTGGAGAGTCCAAGACCTTATAAACCATATATTAGAATCTCATACTTCCAA TGTGAGACTCAAGTCATACCTTGCAGTTGGATCCTAACATCCTACCACGCTCTGCAGACTCAACGCCCATGTGGGCTGGC TGTGCACTAGTTCCTTGACTAGTCCTGGACTAACATTGCGATGCCAGTGTCTGATACTAATTGACATGAACATTGGGAGA ACCATACTACTAAAGCTATTAGAATTTCATACTTCCAATGTAGGACTCAAGTCTTGCAATTGGATCCTAACAACTATGTC CAATGCACCACATGATTTCTTAAGCCATCCTCCCATTCTCATGTTGAGAATGTGACGGAGCTAAATGTAAGATAAGCCTA ATACGACTTTTAATGTATTTTGGTTAGTGAGAACAACCAGGGCACTGAAGTAGCTAGGTTTATATTTTCTGGGAAATTTA ACCAGAAGCCAATGATAATTTCTTGTGAAGAGTACGTATAACTCAATTTTTTTAGCTCTAATTGACAGCTTCTTTTGGAA GAGCAAAAAAGAGGGGAAAACTGTTATGATGTTAGAGTCATGTCTTATAACGAAAGTTCTCTTCTGTGCAGATGACAAAC CTTGCTAGCATTTGGTTAATGGCTCTCTTTATCTCCATGATTTTGACTTGTATGCTTGAGCTTCGTTGGAGTGGGGTTAG CATTCAGGACTGGTGGCGCAACGAACAATTCTGGATCATTGGAGGTGTCTCTGCACATCTTTTTGCTGTGTTTCAAGGTC TCCTTAAAGTTGGTGGAGTAGACAATAAAGTCATTGTAAGAACAAAATCAACAGATGACACTGTATTGGGACAGTTGCAT CTCTTCAAGTGGACCACTCTTCTAATCCCACCAACAAGTCTTGTAATCTTGAATATGGTGGGAATTGTGGCTGGACTCTC TAGTGCCATTAACAAAGGCTATGCCTCATGGGGACCTTTATTTGGGAAGCTTTTTTTCTCCTTCTGGGTCATTGTGCACT TGTATCCTTTCCTCAAAGGTCTAATGGGAAGGCAAAACAGAACACCTACTATAGTAGTTCTCTGGTCAACACTTCTAGCA TTAGTTTTCTCAATGATTTGGGTGAGAATTGATTTTTTCTTGCCCAAGCAAACAGGTCCAGTACTCAAACAATGTGGGAT AGAGTGCTAA
CDS sequence (LotjaGi5g1v0154200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATGCCTTGATGGGGTTCAAGGTCCAATGTATGTTGGTTCTGGATGTGTGTTCAACAGGCAGGCATTGTACGGCTA TAAGCCACCATCTGAGAAAACACCAAAGGAAAGTTATGGTGGCTCTCATTCCACATTTGATATTGAAGAGATTGATGAAG GGCCTGAAGGATTTGATGAGAAAGAGCAATCATCCTTCTTGTCCCTGAAAGTTGTCAAGAAAAGATTTGGAATGTCTCCG GTTTTCATTGCTTCAGCTTTGATGGAAGATGGTGGACTTCCAAAAGGCACCAATACCAGATTACTGATCAAGGAAGCCAT TCATGTTATAAGCTGTGGCTATGAAGAGAAAACTGAATGGGGCAAAGAGATTGGGTGGCTTTATGGCTCAGTCACAGAAG ACATCTTAACCGGGTTTAACATGCATTGCAGAGGATGGAAATCAGTGTACTGCATGCCTAAGAGAGCAGCTTTTAAAGGA TCTGCTCCTATAAATCTATCAGACAGATTACACCAAGTTCTGAAATGGGCTTTGGGTTCCACTGAGATTTTCTTTAGTGG CTATTGCCCTTTGTGGTATGGATATAGTGGAAAACTGAAGTTGCTGCAGAGGCTAGCTTACACTAATGCCATTGTTTATC CATTCACTTCCATCCCTCTGCTGATATACTGTACAATTCCAGCTATCTGTCTTCTGACTGGAAAGACCATCATCCCCGCT ATGACAAACCTTGCTAGCATTTGGTTAATGGCTCTCTTTATCTCCATGATTTTGACTTGTATGCTTGAGCTTCGTTGGAG TGGGGTTAGCATTCAGGACTGGTGGCGCAACGAACAATTCTGGATCATTGGAGGTGTCTCTGCACATCTTTTTGCTGTGT TTCAAGGTCTCCTTAAAGTTGGTGGAGTAGACAATAAAGTCATTGTAAGAACAAAATCAACAGATGACACTGTATTGGGA CAGTTGCATCTCTTCAAGTGGACCACTCTTCTAATCCCACCAACAAGTCTTGTAATCTTGAATATGGTGGGAATTGTGGC TGGACTCTCTAGTGCCATTAACAAAGGCTATGCCTCATGGGGACCTTTATTTGGGAAGCTTTTTTTCTCCTTCTGGGTCA TTGTGCACTTGTATCCTTTCCTCAAAGGTCTAATGGGAAGGCAAAACAGAACACCTACTATAGTAGTTCTCTGGTCAACA CTTCTAGCATTAGTTTTCTCAATGATTTGGGTGAGAATTGATTTTTTCTTGCCCAAGCAAACAGGTCCAGTACTCAAACA ATGTGGGATAGAGTGCTAA
Protein sequence (LotjaGi5g1v0154200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKCLDGVQGPMYVGSGCVFNRQALYGYKPPSEKTPKESYGGSHSTFDIEEIDEGPEGFDEKEQSSFLSLKVVKKRFGMSP VFIASALMEDGGLPKGTNTRLLIKEAIHVISCGYEEKTEWGKEIGWLYGSVTEDILTGFNMHCRGWKSVYCMPKRAAFKG SAPINLSDRLHQVLKWALGSTEIFFSGYCPLWYGYSGKLKLLQRLAYTNAIVYPFTSIPLLIYCTIPAICLLTGKTIIPA MTNLASIWLMALFISMILTCMLELRWSGVSIQDWWRNEQFWIIGGVSAHLFAVFQGLLKVGGVDNKVIVRTKSTDDTVLG QLHLFKWTTLLIPPTSLVILNMVGIVAGLSSAINKGYASWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVLWST LLALVFSMIWVRIDFFLPKQTGPVLKQCGIEC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 37 | 37 | 2.5E-12 | ||
| PANTHER | 1 | 430 | 430 | 8.9E-253 | – | |
| ProSiteProfiles | 1 | 17 | 17 | 5.0 | – | |
| PANTHER | 1 | 430 | 430 | 8.9E-253 | – | |
| Phobius | 1 | 172 | 172 | - | – | |
| Pfam | 43 | 425 | 383 | 1.3E-186 | ||
| Phobius | 173 | 193 | 21 | - | – | |
| TMHMM | 173 | 195 | 23 | - | – | |
| Phobius | 194 | 212 | 19 | - | – | |
| TMHMM | 210 | 232 | 23 | - | – | |
| Phobius | 213 | 232 | 20 | - | – | |
| Phobius | 233 | 243 | 11 | - | – | |
| TMHMM | 244 | 266 | 23 | - | – | |
| Phobius | 244 | 267 | 24 | - | – | |
| Phobius | 268 | 278 | 11 | - | – | |
| Phobius | 279 | 298 | 20 | - | – | |
| TMHMM | 281 | 303 | 23 | - | – | |
| Phobius | 299 | 329 | 31 | - | – | |
| TMHMM | 327 | 349 | 23 | - | – | |
| Phobius | 330 | 353 | 24 | - | – | |
| Phobius | 354 | 358 | 5 | - | – | |
| Phobius | 359 | 381 | 23 | - | – | |
| TMHMM | 359 | 381 | 23 | - | – | |
| Phobius | 382 | 392 | 11 | - | – | |
| Phobius | 393 | 413 | 21 | - | – | |
| TMHMM | 394 | 416 | 23 | - | – | |
| Phobius | 414 | 432 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of LotjaGi5g1v0154200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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