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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0160000 |
| Transcript ID | LotjaGi5g1v0160000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cold shock protein; TAIR: AT2G21060.1 glycine-rich protein 2B; Swiss-Prot: sp|P27484|GRP2_NICSY Glycine-rich protein 2; TrEMBL-Plants: tr|F6I111|F6I111_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0160000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:41036628..41037554) extracted from Lotus japonicus Gifu genome v1.2.
CTCGGGTTTTGGTTTGTGTGTGAGAGAGAGCGAAAATCGAGAAGATGAGCGACTTAAGGGTGAGTGGTCAGGTGAAGTGG TTCAATGACCAGAAGGGTTTCGGGTTCATCACCCCTGATGATGGAGGCGATGATCTCTTTGTTCACTGGTCCGAGATTAA ATCCGAAGGGTTTCGGAGCCTTAGTGAAGGAGAGCCCGTTGAGTTCATTGTCAATTCCAATCCCGATGGTCGTGCTAAGG CCGTTGATGTGACCGGTCCCAATCAGGCACCAGTCCAGGGAACCCGCAACGGTGGTCGAGGATGCGGTGGATATGGTGGT GGTGGAAGAGGAAGCAGTGGTTATGGCAGAGGGAACAGGTATGGCGGCGGGAGGTATGGCGGCGGGTATGGCGGTGGATA CGGTGGCAGTGGAAGAGGAGGCAGTGGTTACGGTGGAGGCAACGAGTATGGTGGAGGCATTGGATACGGTGTAAGTGGAG GCGGTAGAGGTGGAGGTGGCGGTGCGTGTTACAACTGTGGTGAAGAGGGTCACTTGGCTCGCGATTGCGGAAACAGTAGC GGTGGAGGCAGGTACAGAGGCGGCGGTGGTGGCGGTGGAATCTTACATGTGGTAATTCTGGGCATTTCGCGAGAGACTGC CCTTCCAGTGCCCGTTGAAGCTTTTGCTTTGTCTATGATATTTTTATTTTAAATTTGAATTCGAAGTTTTTTTTGTCTTA AGGTACTATTTTGGTGGGTTTTCACGCTGGATCTCTCTAGTCGTGATGAATCCTTTTGGATTTTATGTTATATATAAGCG GGATAGTAGTGCGGGGTGAGGGATTCTCGTTTTGGGTCGTTAAATGGTTGGATTTTGTGAAATCCTTACATTATTGGTTT TTGTATACAGAATCTGCTCTTACCTATTTTTGCTATCATGGAACTTG
CDS sequence (LotjaGi5g1v0160000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCGACTTAAGGGTGAGTGGTCAGGTGAAGTGGTTCAATGACCAGAAGGGTTTCGGGTTCATCACCCCTGATGATGG AGGCGATGATCTCTTTGTTCACTGGTCCGAGATTAAATCCGAAGGGTTTCGGAGCCTTAGTGAAGGAGAGCCCGTTGAGT TCATTGTCAATTCCAATCCCGATGGTCGTGCTAAGGCCGTTGATGTGACCGGTCCCAATCAGGCACCAGTCCAGGGAACC CGCAACGGTGGTCGAGGATGCGGTGGATATGGTGGTGGTGGAAGAGGAAGCAGTGGTTATGGCAGAGGGAACAGGTATGG CGGCGGGAGGTATGGCGGCGGGTATGGCGGTGGATACGGTGGCAGTGGAAGAGGAGGCAGTGGTTACGGTGGAGGCAACG AGTATGGTGGAGGCATTGGATACGGTGTAAGTGGAGGCGGTAGAGGTGGAGGTGGCGGTGCGTGTTACAACTGTGGTGAA GAGGGTCACTTGGCTCGCGATTGCGGAAACAGTAGCGGTGGAGGCAGGTACAGAGGCGGCGGTGGTGGCGGTGGAATCTT ACATGTGGTAATTCTGGGCATTTCGCGAGAGACTGCCCTTCCAGTGCCCGTTGAAGCTTTTGCTTTGTCTATGATATTTT TATTTTAA
Protein sequence (LotjaGi5g1v0160000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDLRVSGQVKWFNDQKGFGFITPDDGGDDLFVHWSEIKSEGFRSLSEGEPVEFIVNSNPDGRAKAVDVTGPNQAPVQGT RNGGRGCGGYGGGGRGSSGYGRGNRYGGGRYGGGYGGGYGGSGRGGSGYGGGNEYGGGIGYGVSGGGRGGGGGACYNCGE EGHLARDCGNSSGGGRYRGGGGGGGILHVVILGISRETALPVPVEAFALSMIFLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 83 | 82 | 6.7E-30 | – | |
| SUPERFAMILY | 4 | 71 | 68 | 2.57E-21 | ||
| PANTHER | 4 | 184 | 181 | 6.6E-50 | – | |
| ProSiteProfiles | 5 | 71 | 67 | 34.783 | – | |
| CDD | 6 | 71 | 66 | 5.47611E-26 | ||
| SMART | 7 | 72 | 66 | 1.3E-23 | ||
| Pfam | 7 | 71 | 65 | 6.6E-25 | ||
| PRINTS | 8 | 23 | 16 | 5.0E-13 | ||
| ProSitePatterns | 19 | 38 | 20 | - | ||
| PRINTS | 29 | 38 | 10 | 5.0E-13 | ||
| PRINTS | 44 | 62 | 19 | 5.0E-13 | ||
| MobiDBLite | 70 | 90 | 21 | - | – | |
| Gene3D | 134 | 179 | 46 | 2.7E-7 | – | |
| SUPERFAMILY | 146 | 175 | 30 | 2.44E-6 | ||
| Pfam | 154 | 168 | 15 | 9.6E-8 | ||
| SMART | 154 | 170 | 17 | 2.7E-5 | ||
| ProSiteProfiles | 155 | 168 | 14 | 11.334 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0160000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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