Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0162500.1

Overview

Field Value
Gene ID LotjaGi5g1v0162500
Transcript ID LotjaGi5g1v0162500.1
Lotus japonicus genome version Gifu v1.2
Description Myb transcription factor; TAIR: AT3G24310.1 myb domain protein 305; Swiss-Prot: sp|P81391|MYB05_ANTMA Myb-related protein 305; TrEMBL-Plants: tr|A0A0M3Q0K7|A0A0M3Q0K7_LABPU R2R3-MYB factor; Found in the gene: LotjaGi5g1v0162500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:41663322..41665203) extracted from Lotus japonicus Gifu genome v1.2.

GAAAGAGTCAAGTTGAGGCACAGCTGCAGGTATAAATATGCAGCAAACACTGAACATCAATGGCAAACAGCACCATAGAA TTTGGAATCAAGCTTTACCTTAAGAACCAACTTAGAACCCTTTATTTACATATATTTTGGTAAGTTATGGCAAGAAACAT GGTTTGTGGTGTTACAGAAGATGATGGATGGAGGAAGGGACCTTGGACTGCTGAGGAGGACAGATTACTCATTGAATATG TCACACTGCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTACAGGTGCCAAAACCAATCTTTGCATATAAACTCTG TTTTGCTTCTTAATTTCTAATATAGTTTACACATTAGTCCATTTCAATTATAGGGAGAAGCTTTCTGGATTTCAGAATTG ATTTTGATGAATAACAAGTTGATCCAAACATGCTATAAGTGACTTTTAGCAACATAACATGTAAAATTGTTTCCAAACTT AGTGCATGTTTGAAAATCCTTTTAAAAATGATTATGAAGGTAGAACCAATTCTGGGAAGAAATTTATGAGAGTAGCTTCC GAGTTTTAGAAATGATTATGGGAAAAAGAGAATATGATCTATTATGCTCAGTAAATTGGCTTCCCATGTGGCTTAAGTTC TTCATTTGGCCTCTTTCATATCATGTTTTTCATGATTCTTGACTCTTGATTATCACCCTTCAGCCACTTTTTTTTTCCGA ATGTTTGATAATTTTTATTCTTTTGACAGGACTGAAAAGGAATGGGAAGAGCTGCAGGTTAAGATGGGTGAATTACCTGA GACCAGACCTCAAGAAGGGTCACATAACACCACAGGAAGAAAGCGTCATTCTAGAGCTGCATGCCAGGTGGGGAAACAGG TAAAATTTGAATGCCCAAGTTCTTGAACTCAGAGTGCATGTGTGGAAATCCTTCTACGATTAATTCTGAAACAAAAATCT ATTTTAGGGAGAAACTTCTGTGAGTAGTTTTTGGGTGTCAGAATTGATTCTAGCGGATCCAAACATGGTATTATCTGTTT CTTTATTTGGAGAACTTAAGAGTTTTATGTTAAGGCCTTGATTTGATTGCGGAATTAAAAACCCCTCAGGTGGTCAACAA TTGCAAGAAACTTGCCAGGAAGAACTGACAATGAGATCAAGAATTATTGGAGGACCCATTTCAAGAAAAGGCCGAAAAAT CCCTCTAATGCTGCGGAAAAGGCAAAAACTCGTCCCTTGATGAGGCAGCAATATCGACTGCAACGACAGAACTTGAAGCA ACAGCAAGTTCAGCAGCAACAACAACTTCAATTCAACTTGGACATGAAAGGGATCATAAACTTGCTTGAAAAAAATGACC CTTATATACCTCAAGAGACACAAGAGATGGTCAACATGTACCCAAGCACACCAGAACAGCGTGGCTATTTAGACTCTATG CTGAATGGTAATTTCTCTGCACAAGAGTCCTCAGATGAAGAAATTTTGTGGGATGGGCTATGGAACTTGGATGATGTTCT TGGCAATTCAATGCAGCTAGTGCTATAAGAGTCTTCAGTTTGTAGCATTTAATTAGTAGCTCCCTTCTGTTAAACTTCTT GTTTAGTCACAAATTCTGTTAGGAATAGTGCTACTAATTTGAGACACTGCTTGATAAGGCTCCAAAATCTAGGAACTTGA GAGTTGAGATATATTGTACCATAAAGGTGGACTCAGGGTAGTAAGTGATCTGAAGGCTAGTATTGTGTAAACCTTCAATG AAGTTTCTCCACTTTGCTCTTTTTTCTTGACAGCTTTCTGGCTTCTAGGTGAATAATAAGGAAGTGGAAGAAACAGGAAA ATGATAAACTGAACTTATTCTTAATAATCATAACAATGTTTC
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0162500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAAGAAACATGGTTTGTGGTGTTACAGAAGATGATGGATGGAGGAAGGGACCTTGGACTGCTGAGGAGGACAGATT ACTCATTGAATATGTCACACTGCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTACAGGACTGAAAAGGAATGGGA AGAGCTGCAGGTTAAGATGGGTGAATTACCTGAGACCAGACCTCAAGAAGGGTCACATAACACCACAGGAAGAAAGCGTC ATTCTAGAGCTGCATGCCAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAACTTGCCAGGAAGAACTGACAATGAGAT CAAGAATTATTGGAGGACCCATTTCAAGAAAAGGCCGAAAAATCCCTCTAATGCTGCGGAAAAGGCAAAAACTCGTCCCT TGATGAGGCAGCAATATCGACTGCAACGACAGAACTTGAAGCAACAGCAAGTTCAGCAGCAACAACAACTTCAATTCAAC TTGGACATGAAAGGGATCATAAACTTGCTTGAAAAAAATGACCCTTATATACCTCAAGAGACACAAGAGATGGTCAACAT GTACCCAAGCACACCAGAACAGCGTGGCTATTTAGACTCTATGCTGAATGGTAATTTCTCTGCACAAGAGTCCTCAGATG AAGAAATTTTGTGGGATGGGCTATGGAACTTGGATGATGTTCTTGGCAATTCAATGCAGCTAGTGCTATAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0162500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MARNMVCGVTEDDGWRKGPWTAEEDRLLIEYVTLHGEGRWNSVARLTGLKRNGKSCRLRWVNYLRPDLKKGHITPQEESV ILELHARWGNRWSTIARNLPGRTDNEIKNYWRTHFKKRPKNPSNAAEKAKTRPLMRQQYRLQRQNLKQQQVQQQQQLQFN LDMKGIINLLEKNDPYIPQETQEMVNMYPSTPEQRGYLDSMLNGNFSAQESSDEEILWDGLWNLDDVLGNSMQLVL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45675:SF3
1 229 229 8.0E-101 –
PANTHER
PTHR45675
1 229 229 8.0E-101 –
ProSiteProfiles
PS51294
12 68 57 25.151
IPR017930
SUPERFAMILY
SSF46689
15 111 97 3.37E-30
IPR009057
Gene3D
G3DSA:1.10.10.60
15 70 56 9.0E-20 –
SMART
SM00717
16 66 51 3.4E-16
IPR001005
Pfam
PF00249
17 64 48 4.0E-16
IPR001005
CDD
cd00167
19 64 46 8.64084E-12
IPR001005
SMART
SM00717
69 117 49 7.7E-15
IPR001005
ProSiteProfiles
PS51294
69 119 51 18.677
IPR017930
Pfam
PF00249
71 114 44 4.1E-13
IPR001005
CDD
cd00167
74 115 42 3.96523E-10
IPR001005
Gene3D
G3DSA:1.10.10.60
74 118 45 8.6E-18 –
Coils
Coil
136 156 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0162500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…