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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0163200 |
| Transcript ID | LotjaGi5g1v0163200.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 3-isopropylmalate dehydratase large subunit; TAIR: AT4G13430.1 isopropyl malate isomerase large subunit 1; Swiss-Prot: sp|Q94AR8|LEUC_ARATH 3-isopropylmalate dehydratase large subunit, chloroplastic; TrEMBL-Plants: tr|A0A0S3SP98|A0A0S3SP98_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0163200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:41829566..41832529) extracted from Lotus japonicus Gifu genome v1.2.
CTAAGTAATGGTCAATTAATCAAATTCATGTGAGTAATGCATTTCCAAATGAGGAGCTTCATGAAGATGTTTATGAAATA AAGTTTTATTGCTTAAAATAAAATAATGTTTTGTATAAATATTGACTACAAAGTAATTTATATCGTGCAGGCTAACCCTG ATTATAAAGGTGTTTGTCACATTGCTCTAGCACAGGAAGGTCATTGCAGACCTGGAGAGGTGACTTTTGTTAACATAGCT CCTCCTGGCATTAAAATTTAAAATCTTCAGTTTTCAAAACTTCTCTGAATTCTGATCACTTGGCATGTGATAGCAGGTCT TGCTTGGAACTGATTCTCACACAACATCAGCCGGAGCATTTGGTCAATTTGCTACTGGAGTTGGGAACACTGATGCTGCT TTTATATTAGGGACAGGGAAGATCTTACTCAAGGCATGTACACACATGTTGTCATTTAGTTATTTGTGAACATATTTGAA GACTTTGTGTTGTAAACTTTCATGAAGTTTGTTTCGTTCCAGAAAATTCTTGTAGCGCGTGTTTGGATCAACGTTCTCAC AATTAATTTTGGTGAAATTGAAATTGGTAAAATTAATTATAGTAAAAGTGAGTTATGTTTAAATACATTTATGAATAAGT GATTTTTGTCGGGTAGTGTTGAGAAAGTCAGTTGTAAAATCTTACAATTGATTATGTTCAATGCAGAAGCTACTCTCTCT AGCTTGTACCATAATATTGATTTTAGATCTGAAATCAATTCTCCAACATGATTTTATCCTGAATTGATTTTACTCTACTA GAATTGATTCTGGAGTTTCGATGAATTGCTTGATCACACTTGAAAATGCAGGTGCCTCCGACATTGAGATTTGTACTGGA TGGTGAAATGCCTAACTATTTGCTTGCGAAGGATCTAATTTTGGATGTAGGTGATGGGTTCCTCTGACTAATTTTTTCCA TTTGAATTAAATTTGGTTAGTCCAAGTTATGCGACACAAGTAAATTATAACACTATTTCTATTGTTATGTGAAAACACTA ACCATCATCCAGATCATTGGTGAAATTTCAATGTCTGGTGCAACATATAAAACTATGGAGTTTGTTGGGACCACTATTGA AAGCTTAAGTGTATGTATACTTTAACTTTTTGGCCGTTTTCTTTCTCTATCTTAATTCCATTTGCACAAGTGTAAGATCT CTGAATTGTTGTGTTGAAGATGGAAGAGAGGATGACACTGTGCAACATGGTTGTAGAAGCTGGAGGGAAAAATGGTATTG TTGCTGCTGATCAGAAAACATACCAATACCTTGAGGTTGTTTGGGGTTAATCAGTGCCTACTATACTTTAATCAGTTTCA TTATTTCTGTGTTTTCTTCTCTCAAATTTCCATGGAATTTATATTGCATAGTTTCGTTGCACAGGATAAGACATCTGCAC CATTTGAACCAGTTTATAGTGATGAGAAAGCAAGGCAAGTAATCTGTTTCAGAATAGATAATACATTTCCACCTTTTGCT TTCTCTTATGTGACTCTCTTACAACTGATTGTGGTTTTCCTGTTGATGTGCTAGATTTCTAGCCCAGTATAGATTTGATG TATCAAAGATGGAACCATTGGTGGCAAAGGTTGTTTAACTTAGACTTAAATCATACTTTTTTATTTCACTTTGCCATGAA AATGTAATGATTCTTGTATTTTAAAAAACTTTGTCTAATTCCTGATGTAATGTAATATGTTTGAACCACTCTACGCAGCC ACATTCCCCTGATAATCGCGCTTTGGCAAGAGAGTGCAGCAATGTGAAAATTGACAGAGTATATATTGGATCATGCACTG GTGGAAAGACTGAAGATTTTATGGCTGCAGCTAAAGTTTTCTTAGCTAGTGTATGTCTATTATAATTTTCTTTCCCTTTC TTGTTAGCATGGAAATGCATACATTTTTTAGATAGAAAACCATCAAGGCTGGACTCTAGGTGACCTAAACTAGTTACCTC TTACCCATGTCACATAGTTAAATAAGCCCATAGAGACACTTTGATGTTCTCACAAAAATTGGAATTGAGGACTAACTATT TTAATCCCACCTGTTATGAAAGATTCCAGTAAAAATCCATGAAGTATAAAAACAAGCTTTGAATATTATATATGTTACAG TATTGTAAGCCATCTCAAAATGAAGTTAGTACACATAAACATAACATATGAGAGACATTTTGAGCATATGATCTAAGTAG GATTTATTTGAGCTTCTTGTTTAGGGTGCATGTTTCTGGAGAAAAACATGTTAATGTAGTGTGTATCTTTTTTTCAGCAT TGTAAACATTAGTAACTTTCTTTCTTCTTTTTTTCCTCTCCTTTTAACATCATGAAATTGTTCCACTATAGGGAAAAACT GTCAAAGTGCCTACTTTTCTTGTTCCTGCAACACAGAAGGTTTGTGAATGAGACTGTTTTTCCAGTTTCATAAGTACTTA TCACCAAAATCGTTGTTTTAGAACTCAATTAATGAATCTTTCAGGTTTGGATGGACTTATACACGCTTGAGGTACCTGGC TCAGGTGGCAAAACTTGTTCACAGATATTTGAGGAAGCTGGGTGCGATACACCTGCAAGTCCTAGTTGTGCAGCATGTAT GGGTGGCCCAAAAGACACATATGGACGCTTGAATGAACCCAAGGTAAAACTCAAATACTATTCCATTGGAAAAACTATTT CCCACTTTCTGGAATGACTATAGATAAATGTAGCACCAGAATTTTTACAGAACAACTGTGTTTTGTTTTGATTTTGATAT AACTAATGAAAGGACTCTTAATGCAGGTTTGCGTCTCAACAACAAATAGAAATTTCCCGGGTCGAATGGGGCACAAGGAA GGTCAGGTATATCTTGCTTCCCCATATACTGCAGCAGCATCTGCATTAACTGGTTTCGTGACAGACCCCAGGAAATTCTT CTAG
CDS sequence (LotjaGi5g1v0163200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACACACATGTTGTCATCATTGGTGAAATTTCAATGTCTGGTGCAACATATAAAACTATGGAGTTTGTTGGGACCAC TATTGAAAGCTTAAGTATGGAAGAGAGGATGACACTGTGCAACATGGTTGTAGAAGCTGGAGGGAAAAATGGTATTGTTG CTGCTGATCAGAAAACATACCAATACCTTGAGGATAAGACATCTGCACCATTTGAACCAGTTTATAGTGATGAGAAAGCA AGATTTCTAGCCCAGTATAGATTTGATGTATCAAAGATGGAACCATTGGTGGCAAAGCCACATTCCCCTGATAATCGCGC TTTGGCAAGAGAGTGCAGCAATGTGAAAATTGACAGAGTATATATTGGATCATGCACTGGTGGAAAGACTGAAGATTTTA TGGCTGCAGCTAAAGTTTTCTTAGCTAGTGGAAAAACTGTCAAAGTGCCTACTTTTCTTGTTCCTGCAACACAGAAGGTT TGGATGGACTTATACACGCTTGAGGTACCTGGCTCAGGTGGCAAAACTTGTTCACAGATATTTGAGGAAGCTGGGTGCGA TACACCTGCAAGTCCTAGTTGTGCAGCATGTATGGGTGGCCCAAAAGACACATATGGACGCTTGAATGAACCCAAGGTTT GCGTCTCAACAACAAATAGAAATTTCCCGGGTCGAATGGGGCACAAGGAAGGTCAGGTATATCTTGCTTCCCCATATACT GCAGCAGCATCTGCATTAACTGGTTTCGTGACAGACCCCAGGAAATTCTTCTAG
Protein sequence (LotjaGi5g1v0163200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYTHVVIIGEISMSGATYKTMEFVGTTIESLSMEERMTLCNMVVEAGGKNGIVAADQKTYQYLEDKTSAPFEPVYSDEKA RFLAQYRFDVSKMEPLVAKPHSPDNRALARECSNVKIDRVYIGSCTGGKTEDFMAAAKVFLASGKTVKVPTFLVPATQKV WMDLYTLEVPGSGGKTCSQIFEEAGCDTPASPSCAACMGGPKDTYGRLNEPKVCVSTTNRNFPGRMGHKEGQVYLASPYT AAASALTGFVTDPRKFF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 95 | 92 | 1.4E-28 | – | |
| PANTHER | 6 | 257 | 252 | 1.3E-163 | – | |
| SUPERFAMILY | 6 | 256 | 251 | 2.62E-72 | ||
| PANTHER | 6 | 257 | 252 | 1.3E-163 | – | |
| Pfam | 7 | 107 | 101 | 6.5E-21 | ||
| PRINTS | 15 | 28 | 14 | 2.3E-6 | ||
| PRINTS | 29 | 42 | 14 | 2.3E-6 | ||
| Gene3D | 98 | 256 | 159 | 1.6E-52 | ||
| Pfam | 112 | 248 | 137 | 4.5E-25 | ||
| PRINTS | 186 | 199 | 14 | 2.3E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0163200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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