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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0167100 |
| Transcript ID | LotjaGi5g1v0167100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RAN GTPase activating protein 2; TAIR: AT3G63130.1 RAN GTPase activating protein 1; Swiss-Prot: sp|Q9LE82|RAGP1_ARATH RAN GTPase-activating protein 1; TrEMBL-Plants: tr|A0A0L9TXY1|A0A0L9TXY1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0167100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:42606007..42609217) extracted from Lotus japonicus Gifu genome v1.2.
CAATTTATCACGCGCACGCTTCCCTATATAAGGAAACTTTTTTAATTTAATCGATTTCATTTTTCCAGCAAACATTTTAA TTTAATTTTCCCCCGCTCCACTGCTACCATAAAAGACCCTCACCACCAAAGTTTTGAATTTTATTTTAGCTAAAAAAAAA AAACAAAAACATAAAACAAAATACAACTACTCTCGTTTCTCTTTTCTCTTTTCTCTTCTCTTCTCTCTGCTGCTGCAGAC TCTCTATCTAGGGTTTCTCTGTTCTCACTCAGGTACTCAAATCCGTTACTCTTTGTCTCTTTATCCTCGTTCTTCTTCTG TTTAACGTTGTTATTTATCAGGATTTAGGTTTTTTTTTGTCCATGGTACCGTAGTCGCTCAGTTTGGTTACTCGTAAATT GTTAGAAACTAGAACCATTTTTCGATTCATGGGTTTTTCCCTTAGTTTAACTATTGGATGATTTGAATAACGCTTGCGAT TTGTGAATAGTATACTCACAGAGCGACTTAATAATTACTGTCAATAACTACATTTTCTCCTCAAACTAGATCCTTGTAAT TTCTTTCAGTTTTTTTTTATGATATTTAAGTAACCGTAATCGCTATAAGTATTCACTTTTGATCATGGAACAACGTTAAT CTGAGAAACACCGGATCCATAACATTTAAGATCGGTCATATCTCATAGAGTTCATGTTATTTGTACTTTTGATTTTTAAA TGCCGAATTTCTGTGGTCTGCATTACATGTTTTATAATTTATTATAGTTTTTCTTTTGGATTTTATACTGTAGTTATTGA TTTGTACAAATTAGTTTTGTTTTTAGGGTTTTTAAAAGCTTTCGCTGTCATTAACACCGAATGTTGCAACAATTTGTCAC TATGTGCATATTATGAGTGTTTGATTTTGATTTTATACTGTGGTGATTGTAATTACAAAGTTAAGAATTTCCATAAGCAG TTTGATCTCCTATTGTTTTTTGCTAGTACTAGTGGAATATTTGATTCAGAAACCTGTAAATGTTGTTGTTACATTTTGCT CCAGGTTGCTGTCGATATGGATTCTGCAGCGCAGTCGTACCAGCATCGCTCACTTTCAATCAAGTTATGGCCTCCTAGCC AGAGTACAAGGCTAATGCTTGTGGAGCGGATGACCAAGAACCTAACTACTCCGTCCATTTTCTCTAGAAAGTATGGGCTG CTGAGCAAAGAAGAGGCTGAGGAGGATGCGAAGGAAATTGAGGATGTAGCTTTTGCTAATGCTGCCCAACACTTTGAGAA GGAGCCTGATGGTGATGGGAGTTCTGCTGTACAGATTTATGCCAAGGAGTCTAGTAAGCTTATGTTGGAGGTGTTGAAAA GAGGACCAAAAGTGAAGGATGATGGAGAATTGGTATCTGAGAAGGCTGGTTCTACTGCTGAAACTGTTTTTGACATATCT GGGGGTCGCAGAGCTTTTATTGATGGGGAGGAAGCTGCTGAACTTTTGAAACCATTGAGGGGGCCAAACTCTTATACTAA GATATGTTTCAGCAATAGGAGTTTTGGCTTGGATGCTGCTCATGTAGCTGAGCCCATCCTTATATCAATTAAGGATCAAT TGAAAGAGGTAGATCTATCAGATTTTATTGCTGGAAGGCCAGAAGCAGAAGCACTTGAAGTGATGACTATATTTTCTTCT GCGCTGGAAGGTTGTGCTTTAAGATATCTGAATCTGTCAAATAATGCCATGGGTGAAAAGGGGGTAAGAGCATTTCGGTC GCTCCTGAAATCGCAATATAACTTGGAGGAGCTTTATTTGATGAATGATGGTATTTCAGAGGAAGCTTCAAAAGCAGTTG CTGAATTGATCCCTTCCACTGAGAAGCTTAGGGTTCTTCATTTCCATAATAATATGACTGGGGATGAAGGGGCGGTTGCT ATTGCTGAAATTGTGAAACGTTCCCCAGCTTTGGAAGATTTCCGCTGTTCATCTACCAGAGTAGGCTCTGATGGTGGAGT TGCTCTTGCTGAAGCACTTGGGGCTTGTAAGCATTTGAAGAAGCTTGATTTGCGTGACAATATGTTTGGTGTGGAAGCTG GAGTTGCTCTAAGCAAAGTAATACCTGCATTTGTTGATCTGACTGAGATATACCTCAGTTATTTGAACTTGGAGGATGAC GGCGCAGAAGCCCTTGCCAATGCACTCAAGGAATCTGCACCGTCACTGGAAATTTTGGATATGGCTGGGAATGACATAAC TGCAAAAGCTGCTGCATCTGTGGCTGCCTGCATATCATCAAAGCAGTTCCTAACCAAGTTAAATTTATCTGAAAATGAAC TGAAGGATGAAGGTGCAGTTTTGATCAGTAAGGCACTGGAAGAAGGTCACGGCCAATTAAATGAAGTTGATTTAAACACA AACTCAATCACATGGTCAGGAGCTAGGCTGTTGGCAGAAGCTGTTGTTCAAAAACCTGGATTTAAGTTGCTAAACATTAA TACTAACTTCATTTCTGAAGAAGGTGTCGATGAGTTGAAGAATATATTTAAAAATTCGCCTGATACGCTGGGTCCTTTGG ATGAGAATGATCCTGAAGGAGAGGACAATGACTATGAGGCTGAAGAAGATGATGAGCATGATGAGTTGGAATCAAAACTG AAGGGCCTTGGCATTTAGAAGTATTCATAGGAATTAAGTATGCAACTTCTACATCAGATTGATTGTAGGCCAATTAATAT TTGCGACTGGCATACATGTTTCAGACCCGGTAGCTAGCTTTAATCTATGATTTTAGATTTTCTATTCCATGACTTTTTTC AAAGATTACCAGATATATGCTCTTAATATATCTGGCCGGACATGAAATGGACAAATGGTATTAGCTGCAGAAATTTCAGG GCTCTATTGTACTTGGACCTTTTGTTGGGAATTCATCTTTGATTGCAGAGTCACTGCTCTCCTTTTTTATATATCTTGCA ATTGATTTCATATGGAGGTTATTTGAATACTATGGGACTGCATCTTATTTTTGTATTGCATTTTGATTGAGCTATAAACA ACAACGTAAACCAATTGCAAGCAATTTTTCTAGGAAGTTATCAGCATAACCAACTTGAATGTAGCTTCAGTGGTGGTAAT TTTGTTTAAAATCTACAAGAGGGGTCTTGCTATATATTCTGTCCGTATTTATTTGGTCACTTTTTTCTCAGGATTTCTAT TATTTGAATCA
CDS sequence (LotjaGi5g1v0167100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCTGCAGCGCAGTCGTACCAGCATCGCTCACTTTCAATCAAGTTATGGCCTCCTAGCCAGAGTACAAGGCTAAT GCTTGTGGAGCGGATGACCAAGAACCTAACTACTCCGTCCATTTTCTCTAGAAAGTATGGGCTGCTGAGCAAAGAAGAGG CTGAGGAGGATGCGAAGGAAATTGAGGATGTAGCTTTTGCTAATGCTGCCCAACACTTTGAGAAGGAGCCTGATGGTGAT GGGAGTTCTGCTGTACAGATTTATGCCAAGGAGTCTAGTAAGCTTATGTTGGAGGTGTTGAAAAGAGGACCAAAAGTGAA GGATGATGGAGAATTGGTATCTGAGAAGGCTGGTTCTACTGCTGAAACTGTTTTTGACATATCTGGGGGTCGCAGAGCTT TTATTGATGGGGAGGAAGCTGCTGAACTTTTGAAACCATTGAGGGGGCCAAACTCTTATACTAAGATATGTTTCAGCAAT AGGAGTTTTGGCTTGGATGCTGCTCATGTAGCTGAGCCCATCCTTATATCAATTAAGGATCAATTGAAAGAGGTAGATCT ATCAGATTTTATTGCTGGAAGGCCAGAAGCAGAAGCACTTGAAGTGATGACTATATTTTCTTCTGCGCTGGAAGGTTGTG CTTTAAGATATCTGAATCTGTCAAATAATGCCATGGGTGAAAAGGGGGTAAGAGCATTTCGGTCGCTCCTGAAATCGCAA TATAACTTGGAGGAGCTTTATTTGATGAATGATGGTATTTCAGAGGAAGCTTCAAAAGCAGTTGCTGAATTGATCCCTTC CACTGAGAAGCTTAGGGTTCTTCATTTCCATAATAATATGACTGGGGATGAAGGGGCGGTTGCTATTGCTGAAATTGTGA AACGTTCCCCAGCTTTGGAAGATTTCCGCTGTTCATCTACCAGAGTAGGCTCTGATGGTGGAGTTGCTCTTGCTGAAGCA CTTGGGGCTTGTAAGCATTTGAAGAAGCTTGATTTGCGTGACAATATGTTTGGTGTGGAAGCTGGAGTTGCTCTAAGCAA AGTAATACCTGCATTTGTTGATCTGACTGAGATATACCTCAGTTATTTGAACTTGGAGGATGACGGCGCAGAAGCCCTTG CCAATGCACTCAAGGAATCTGCACCGTCACTGGAAATTTTGGATATGGCTGGGAATGACATAACTGCAAAAGCTGCTGCA TCTGTGGCTGCCTGCATATCATCAAAGCAGTTCCTAACCAAGTTAAATTTATCTGAAAATGAACTGAAGGATGAAGGTGC AGTTTTGATCAGTAAGGCACTGGAAGAAGGTCACGGCCAATTAAATGAAGTTGATTTAAACACAAACTCAATCACATGGT CAGGAGCTAGGCTGTTGGCAGAAGCTGTTGTTCAAAAACCTGGATTTAAGTTGCTAAACATTAATACTAACTTCATTTCT GAAGAAGGTGTCGATGAGTTGAAGAATATATTTAAAAATTCGCCTGATACGCTGGGTCCTTTGGATGAGAATGATCCTGA AGGAGAGGACAATGACTATGAGGCTGAAGAAGATGATGAGCATGATGAGTTGGAATCAAAACTGAAGGGCCTTGGCATTT AG
Protein sequence (LotjaGi5g1v0167100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSAAQSYQHRSLSIKLWPPSQSTRLMLVERMTKNLTTPSIFSRKYGLLSKEEAEEDAKEIEDVAFANAAQHFEKEPDGD GSSAVQIYAKESSKLMLEVLKRGPKVKDDGELVSEKAGSTAETVFDISGGRRAFIDGEEAAELLKPLRGPNSYTKICFSN RSFGLDAAHVAEPILISIKDQLKEVDLSDFIAGRPEAEALEVMTIFSSALEGCALRYLNLSNNAMGEKGVRAFRSLLKSQ YNLEELYLMNDGISEEASKAVAELIPSTEKLRVLHFHNNMTGDEGAVAIAEIVKRSPALEDFRCSSTRVGSDGGVALAEA LGACKHLKKLDLRDNMFGVEAGVALSKVIPAFVDLTEIYLSYLNLEDDGAEALANALKESAPSLEILDMAGNDITAKAAA SVAACISSKQFLTKLNLSENELKDEGAVLISKALEEGHGQLNEVDLNTNSITWSGARLLAEAVVQKPGFKLLNINTNFIS EEGVDELKNIFKNSPDTLGPLDENDPEGEDNDYEAEEDDEHDELESKLKGLGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 531 | 531 | 6.9E-279 | – | |
| PANTHER | 1 | 531 | 531 | 6.9E-279 | – | |
| Pfam | 14 | 108 | 95 | 6.9E-37 | ||
| Gene3D | 14 | 112 | 99 | 2.5E-38 | ||
| SUPERFAMILY | 124 | 518 | 395 | 1.7E-66 | – | |
| Gene3D | 131 | 405 | 275 | 1.1E-60 | ||
| SMART | 212 | 239 | 28 | 5.4E-4 | – | |
| Pfam | 215 | 233 | 19 | 0.82 | ||
| SMART | 240 | 267 | 28 | 12.0 | – | |
| SMART | 268 | 295 | 28 | 5.2 | – | |
| SMART | 296 | 323 | 28 | 24.0 | – | |
| Pfam | 324 | 346 | 23 | 0.22 | ||
| SMART | 324 | 351 | 28 | 0.53 | – | |
| SMART | 352 | 379 | 28 | 2.3 | – | |
| Pfam | 355 | 374 | 20 | 0.29 | ||
| SMART | 381 | 408 | 28 | 0.19 | – | |
| Pfam | 382 | 400 | 19 | 0.52 | ||
| Gene3D | 406 | 524 | 119 | 3.1E-14 | ||
| Pfam | 409 | 431 | 23 | 0.0015 | ||
| SMART | 409 | 436 | 28 | 0.0041 | – | |
| SMART | 438 | 465 | 28 | 11.0 | – | |
| SMART | 466 | 493 | 28 | 23.0 | – | |
| MobiDBLite | 492 | 533 | 42 | - | – | |
| MobiDBLite | 502 | 521 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0167100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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