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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0167700 |
| Transcript ID | LotjaGi5g1v0167700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT4G02740.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q0WRC9|SKI17_ARATH F-box protein SKIP17; TrEMBL-Plants: tr|K7MYL0|K7MYL0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0167700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:42789559..42795735) extracted from Lotus japonicus Gifu genome v1.2.
CCTGAACTCGTCCCTAAACACGAAGAACTTCACTAGATTCAGCAGTAAGATTACAAATGTCAGCTAGTAATTCCCCACGT GTCATCGTACAAGACGTACAGATGTCACACAAAAACCCTCGTCCGTACACGAGGCCCAATCTGAAAGATGCAGAGGTTCT CTTCACTTTTTTTGTGTGAATGAAAAACAGAGAGAGAAAACCAAGCGAGAGTGAGTGAAGAGTGAAATGGAAGAATCACC ATAGCCACCACTTCCCACCACCGCTATGGCGACATCGACGAACACTTTCCTCCTCGCAGCTCCGTCGTCAACGGCGAAGC GACCGTGTCCGTCGCAAAACCCTAGACCACCGCCGGAGACACTCAACCAGGTGGAAGAGCATGTCCTCGATGCATTTCTC GCTCTCTCTGATTCCCCTTCTCTCTCCCTCGATCTCCCCCTTGAGAGCCTTCTCGAATCGCTCCCTTCTGATTCTGATCA GACGGAACTCATCGATCGCGCTCTCAAAATTGGATCCATGCTGCTTGATGCTGCTAAACAGTCCTCAAGGAAACGTGCTT CCAAGCATAATTCAATCGCTTGGCCTCTCCCTCCTGACCTCACTATCAAGGTATTCATTGCTTCTTTCATGGTAGTTTGC TTTTTTACATCAGAATTTTCAGTTTTTTGCTTGGTGGGCATTTTTCAATTTGCCCCTTTTTGATTGTATGAACTTTCGTT TTGCATTGGTGGTTTGAATTCAACCTTACTATTTTACTTGACCTGTGTTATTGATGGCTTGGCTGAATTTGTAAACCTTT TTCATATTTGGGGATACCAAATTTGATACTATTATCTATTCTCTGAACACACTACCTAGGTACTTAGATTTGTGCCTCTG CTAGGATGTGAGCTTCTTTCGGGTGTTGATTCATTGTTGTTGTGATGTGCAGGTGTTCTCAGCTCTTGATACTCAGAGCC TGTGCTATGCGTCTGCTACTTGTACATTGTTTAATAAATGTGCTAAGGATCCTTTGTGCTATGAGAATCTTGATTTGACC ACACTTGTTCCCAAGGTTAACAATTCAGTGGTTTCAACAATGATTCAGCGAGCTGGAAAGGCACTGAGGTAAACTTCTAT TAACTGGTAACTGGTTATATAGTGGTATAATTTATGAACTGGTAATCTGGTCTGGTGGGGATCATTTGTCTATTGCAGAA CTTCATCTTTGGCCAGTAAATGCAAAAAATGGGGGGCCAGTGGGGTATGTTTGATGGCATATTGATTATTTGTTTTGATA TCTGCGTTTTATGCATTGCTCCACATTTTTTCGGTCCCTGAGAGAAACTTTTGTATTTTAATTTGTTTGTTAGCTCTATC AGCTACGGGTAGAGAAGAAAGTGAAAAACTTCATCCATTTTAACCTATACCAACTTGCGTGTGCATTACATTCTTATGTA TTTTTCCTCATTATCTTCTTATGTTCATTTTATTAATTTGTGGATCAGGTCTCTTAAGCTTGGTGTGATCCCTGGTGCTA CTCCTTCACCTGGGTGTTGTCAACCATTGGTTTGTCCCATCAGAAATGCCATTGTAGACGTATCCAACTTCTCATGGACT GATAAGAGATCTCGACAGGGGAGAGAATCTTCTATTCTTACAAGATCCTGTTTAAGCCCCTTAAGTAGGGATGTTGGTGC AGCTGCTCCAGGGTATGTTGTTCATTCACCCTAGAATTCAGTACTTTGGGTTACTTGTTTTAAATGAGCTATTTTATTTT CATTTACAGGGCTCTTTTGAGAAGGCTGAAATTGTACAATATTGAAAGGATGGATAATGTATCACTTAGTGGGGCATTAT CAGCATGCCCTTCTCTTCTTGACTTGGAAATTGTCGGGCTGTAAGTTAGTTTCCGTCTGCTTTATTTCTCTCGCTTCATT TCCTTATTTCTCTCGCTTCATTTCCTTATAAAACTACAAATCTTGACCTTTCCTTGAGTTATGACGAGTATACTGATGGT ACATACTTTTAATAAAAATGTGATTTTTGCTGATTCTAGTTGCATTTGTGATACTTAGTTATCCGGTTAAGTTCTTAATT CGTCACAGTAGCAGTTTCATTTTGAAATTCATTCCACTAATTTATTTCTTATGAGAAGTTTGTTTCCAAAGGATTATTTT TTCATTGGACGTGATTTTTTCTTTGTTTTAAATGCTAGTCATGTTGAATTGAGGCTAACGTTGATGTCAGTAAGCGCGCA CTGCCACTTGATTGAGCGTTTGTTTTTTGAGTCTTCCAAAACAGGTAAGTTATTTTCTCACTATGTTTTGTCATATATAT AAACTCTCTTTATTTCCCTGCTTATCTGCTTTTAATTATCAGGTAGAGACGACAGTTTGAAAACGCAAACCTGTGTTGAG CTAGTGGATAATTGTCCTCATCTAACTTCTCTGTCCCTTAGAGGTTTTAAGCTACATGATTATAAAGTTCGTGTACTGGT TAAGGTATGTTCTCAGGAAATTCTCAACTATTGCAATGACTCTTGTTAACTCTGGGCTAATTTTCTTACGTTAAAATTAT TCATTAAGAAGTTGTTTCCCTATATATATAGTGTTTAATTTCAGCATTGTTCTTAGTAATTTGTTTAAGGCATATGGGAA AGGGGGGAAGAGTTGAGAATGTTAGAAAGCCTCGAGTCCGAGATGGCTGCATTAGTTCAGGTTAAAGGAAGCTGGTGAAC TTTGCAAATTGCAGCTTACAAGTCTTCATTAAGTGTGACAGTCAGTCTAAAGGGCTTTATAAATAGGGTTAACAACTGTT CTATTTTGAGCATGGGCTTTTCTTACCCAAGCGGGGTCTTATTTTCACCATTGACTATTTTCCTTGGTTAACAGTAATTG TAGTTTTGCCAATTGCTGGGGGTTCTTCCAAAATTTTAGGTTAACTATTTATGTATGCTTTATCAATCTCGTTCCAACAA TGAACGACCTATATGTTTTGTCCTAATTTCTAATTAGATGATCCACTAATTCAACTGATGCTGAATTAGTTATTTCTTGT GGTAGCTGGTAAGTGAATTTAGTTTATCTAAGTAATAGTTCTCCAATGATACATATCCCTGTGCATTGAAATGACTGTTT TGAGTAAGTGAGCAAAGTGTTATTTTCTTGGTTTTCATTATCCTAGTTCTCACTTTTGCATAAAAGAAATAGAGGGTTAT TAATTTCAATTTGTTCATGCAGGGATTTCGTAAACTGAAATATGTTGATTTTTCTACATCCTATTCAATCACCGGAAGCT TCTTAAGGTTTGTTATTTTTAAAAACATTTTACAAGAACTCTTCACATTATCTACCTGTTAGAATGATTTCTTTGTATCT GTTTTTTTCAGTCCAATTATCTCACAATATTAAAACCTTCATTTTCAGAAACCTTGGAAGCTACAATGGTGGGAATTCTC TTGAGGCTTTAATTTTAAGGGATTGCATGCATTTGAAAGAGGTTTTACTTCTAATGTATTTGTATTTCATTTTGTTTTTC TAATATATTGCTTCTGAAATGTTTATACTTTCATCTGCAGGTGGAAGTTGCCAGGTTGCTGACAGCAATTCTTGCAGGCG ATTTCAAATCGCTCCTACATCTTGTGGGTGCATCAAAATATGTTACATAGTAAAACAGCTTAAATGTGTTTTTGATTTCT AAATTTTATGACTTTTATAAATCATACCTATCGGAGTTTTATTTGATTTATTCCCTATATTTATAAAAAATTCTGTGTTT GTAATTCAGCGTGTGTTTTTGTTCCTTGTTGAGGACTAGAAATGAACATTTTTGTTAGATATTGGGATTGAAAAATGAAT AATATTCAAATAGGGACTAATGTAAAAAAACGTTATATTTTCTGAAACCATCAACATATTTAAGCCTATAAATGTTCCTG CTCGACTTTCTTTTAATTTTGCTTCTAGTTCTTATTGTTTCCTTTATCAGGATATTTCCAATCGGGAAGGCTTAGCATCT GAGGGTGATTGGTACCATAGGTGCTACAACTCTAGGTAGTGAATCATTTCTAGATTAGATAATTTAGTCTCAAATTTCTG AATGACTGATGTTTTGAATGGGGTTTCTCTATGGGGTGCAGTATCATGCCTGTAAAGCAGGTTTTAGAAGCAAGGCCTGA TATGTGTCTGGTAGCTGAATATCCTCAAGAAGGAAGGTTAGATACTTTTCCAATAGACTAATTTGGTGCAGTGTCATTCA TATTTGCAGATGGAGTTATGTTTTTGTTTCCCTTCTAAAATTTGCCATTTTATGTTCTGGATTTGGTTGCAGTTACATGG ACTCGTTTGACACTGATATGAACAGTGAGATAAGTCTTCCATCACAATTGAGCTTTCATAGTTCAGATGGATTGGTTTTT TTAAGTACATCTGAAAGCAGCTACAATAGTGACCATGGTAGTGGTAATGAGGATGGTCAAGAGGCCAACTATGTAATTTA CGAGGAAAGTTCAGACGAGATAGACTTCTTGTCCCTGTAGGGGATGCTCTCATTGTACGGCATTCATTAAAAAGGACAAA TTTATTGAACTAGGTATACTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGGAATGTGATTGCTGTAGAGGTTGAT TTCTATTACATTGATTAGCTTTGGTTCGTAGGTTGACTTTGTGCCACTATAAATTACTTTTAAATGCTTATAACAGATAT TAAGATGTTTTGGTGAGTGCCATATTATAACATAAACTGGAGAGAACATTTTGTGCCACCTAAAGAATAGATGATACAAC TTGATACTCTGGAGTCAATTGTAACAGCCATTTTTCCTTGTTTGTTCACCTCTTGCATTTCCTTATGTTTGTGCTTTATG ATTTATTTAGAAACCAGGGGAACTGCAGAGGAAGAAGGATAGGGCAGATATTAGACTGTGAAGATTGATTTTTCTCTTAC CTTATCTTCATTGAAGTTCACTGCTGGAATATTCAATCTGGAGGAAGATTGGAGGTTGGTAACAGTTTTCTTGTTAGGCA TTTTTTTCCTTATTTGCAGAAATGTCAAGTATCTGCCACTTTGGGATTAGTGCTCCGACCCTCTCTCTCCCCTCCAATCC GGGCTGCTCTCATTCTCCATCCCCTCATTTCCCAAGAGAAATCTGTGCCAATCCAGAAATCAATGGATTTATTGAGTCAA ATATGCAAATGATTTTTACATTTTATGTATTTTTTTGCACTTCATATTGTCAAGTTAACACTGCAATAATAACCAACGTG CTTTCTGTGCACGTTGGGGCGGAAAACTGTTCTGCAATTTGATTTTGAATTGTCCTGTAACTACATATAATAATACCATT GCAGTTCATTTTGCTACTGAGTAACCAAGCCGCAAGCTAATACGTAGGGGCATCAAAGTTAATGACATGTAGCTAGGCTT AGAAGACATGTGAACTTTTTTGTGTGGTCAAAGGTGTTGATGCCCAAAGTTGCCCAGAGGCACTTACATCAAGTGGGAAT GAAAATCCCAAAAAAGGATACTGCAATGCAATAAGATAAACAAACTAAGAACAAAACATGCTCACTCAATCCCACCCAAA GCCATCATGAACAAGCTATTGACTTCGTGAAATTTGATATCCTTTCTTAAGCCATGAATGAACTTTTGACTTCAATTCTA ACCGGTAAATATTATATTATTTGCACCCTTGCATTCAGTGACGGATCTATGTAGACAAGTATGAGGGCAAGTGCCCTCAC TTGAATATAAAAAAATGCATTAGAAAAAAAATTGAGTAGTAAAAGTATGCGGTTTTTTATAATTTCTTTGATAAAAATTG CCCTCACTTATGTTTCACATTGCTAAATGCCCTCACTTGTATCTCACATTGTTAAATGCTCTCACTTCAGTAGTAAAAAT ATGTGATTTTTGGTGGCCCCTTTGTTAAAAATTGTTTTCACGTGTGTCTATTTTGGTAAAATATGTCCTCACTTCTAATA GCATATGTTAATTTTTTTTACTACAAATTTATATGTATATACTGCCCTCACTGCATAAAATTTCTGGATCCGTCACTGCT TGCATTGAATGACCAATTTTACTCACTTATAGCAATATACCATGCAATGATTCGTCAAGTTCTTGCGCTCATTCCATCAT TGCATGTAACAATCGTC
CDS sequence (LotjaGi5g1v0167700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACATCGACGAACACTTTCCTCCTCGCAGCTCCGTCGTCAACGGCGAAGCGACCGTGTCCGTCGCAAAACCCTAG ACCACCGCCGGAGACACTCAACCAGGTGGAAGAGCATGTCCTCGATGCATTTCTCGCTCTCTCTGATTCCCCTTCTCTCT CCCTCGATCTCCCCCTTGAGAGCCTTCTCGAATCGCTCCCTTCTGATTCTGATCAGACGGAACTCATCGATCGCGCTCTC AAAATTGGATCCATGCTGCTTGATGCTGCTAAACAGTCCTCAAGGAAACGTGCTTCCAAGCATAATTCAATCGCTTGGCC TCTCCCTCCTGACCTCACTATCAAGGTGTTCTCAGCTCTTGATACTCAGAGCCTGTGCTATGCGTCTGCTACTTGTACAT TGTTTAATAAATGTGCTAAGGATCCTTTGTGCTATGAGAATCTTGATTTGACCACACTTGTTCCCAAGGTTAACAATTCA GTGGTTTCAACAATGATTCAGCGAGCTGGAAAGGCACTGAGGTCTCTTAAGCTTGGTGTGATCCCTGGTGCTACTCCTTC ACCTGGGTGTTGTCAACCATTGGTTTGTCCCATCAGAAATGCCATTGTAGACGTATCCAACTTCTCATGGACTGATAAGA GATCTCGACAGGGGAGAGAATCTTCTATTCTTACAAGATCCTGTTTAAGCCCCTTAAGTAGGGATGTTGGTGCAGCTGCT CCAGGGGCTCTTTTGAGAAGGCTGAAATTGTACAATATTGAAAGGATGGATAATGTATCACTTAGTGGGGCATTATCAGC ATGCCCTTCTCTTCTTGACTTGGAAATTGTCGGGCTTCATGTTGAATTGAGGCTAACGTTGATGTCAGTAAGCGCGCACT GCCACTTGATTGAGCGTTTGTTTTTTGAGTCTTCCAAAACAGGTAGAGACGACAGTTTGAAAACGCAAACCTGTGTTGAG CTAGTGGATAATTGTCCTCATCTAACTTCTCTGTCCCTTAGAGGTTTTAAGCTACATGATTATAAAGTTCGTGTACTGGT TAAGGGATTTCGTAAACTGAAATATGTTGATTTTTCTACATCCTATTCAATCACCGGAAGCTTCTTAAGAAACCTTGGAA GCTACAATGGTGGGAATTCTCTTGAGGCTTTAATTTTAAGGGATTGCATGCATTTGAAAGAGGTGGAAGTTGCCAGGTTG CTGACAGCAATTCTTGCAGGCGATTTCAAATCGCTCCTACATCTTGATATTTCCAATCGGGAAGGCTTAGCATCTGAGGG TGATTGGTACCATAGGTGCTACAACTCTAGTATCATGCCTGTAAAGCAGGTTTTAGAAGCAAGGCCTGATATGTGTCTGG TAGCTGAATATCCTCAAGAAGGAAGTTACATGGACTCGTTTGACACTGATATGAACAGTGAGATAAGTCTTCCATCACAA TTGAGCTTTCATAGTTCAGATGGATTGGTTTTTTTAAGTACATCTGAAAGCAGCTACAATAGTGACCATGGTAGTGGTAA TGAGGATGGTCAAGAGGCCAACTATGTAATTTACGAGGAAAGTTCAGACGAGATAGACTTCTTGTCCCTGTAG
Protein sequence (LotjaGi5g1v0167700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATSTNTFLLAAPSSTAKRPCPSQNPRPPPETLNQVEEHVLDAFLALSDSPSLSLDLPLESLLESLPSDSDQTELIDRAL KIGSMLLDAAKQSSRKRASKHNSIAWPLPPDLTIKVFSALDTQSLCYASATCTLFNKCAKDPLCYENLDLTTLVPKVNNS VVSTMIQRAGKALRSLKLGVIPGATPSPGCCQPLVCPIRNAIVDVSNFSWTDKRSRQGRESSILTRSCLSPLSRDVGAAA PGALLRRLKLYNIERMDNVSLSGALSACPSLLDLEIVGLHVELRLTLMSVSAHCHLIERLFFESSKTGRDDSLKTQTCVE LVDNCPHLTSLSLRGFKLHDYKVRVLVKGFRKLKYVDFSTSYSITGSFLRNLGSYNGGNSLEALILRDCMHLKEVEVARL LTAILAGDFKSLLHLDISNREGLASEGDWYHRCYNSSIMPVKQVLEARPDMCLVAEYPQEGSYMDSFDTDMNSEISLPSQ LSFHSSDGLVFLSTSESSYNSDHGSGNEDGQEANYVIYEESSDEIDFLSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| MobiDBLite | 1 | 21 | 21 | - | – | |
| MobiDBLite | 1 | 31 | 31 | - | – | |
| Phobius | 2 | 12 | 11 | - | – | |
| Phobius | 13 | 17 | 5 | - | – | |
| Phobius | 18 | 530 | 513 | - | – | |
| PANTHER | 34 | 527 | 494 | 2.3E-251 | – | |
| PANTHER | 34 | 527 | 494 | 2.3E-251 | – | |
| SUPERFAMILY | 106 | 154 | 49 | 3.53E-9 | ||
| Gene3D | 107 | 433 | 327 | 4.1E-22 | ||
| Pfam | 108 | 150 | 43 | 9.9E-7 | ||
| SUPERFAMILY | 240 | 420 | 181 | 7.65E-13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0167700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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