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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0167800 |
| Transcript ID | LotjaGi5g1v0167800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat protein, putative; TAIR: AT4G02730.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9SY00|WDR5B_ARATH COMPASS-like H3K4 histone methylase component WDR5B; TrEMBL-Plants: tr|A0A1J7HY62|A0A1J7HY62_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0167800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:42797053..42800864) extracted from Lotus japonicus Gifu genome v1.2.
GTTCCATTGTATTTCTTTGTAATGTTTTTTTTTTTGGTCAAATTTCTTTGTAATGTTTAATTGGATTAAGCCAATAATTT CTAACATAACTAGAATAATAACTAACCCAAAGTGTATATATTGCAGTACATACAAAATAAACCAAACTCAGGCAAAGAGT GAGAGCGGCGGCGATGGCGAACAGCAGCGACGAACCACCATACAAGCCGTACCGTCACCTGAAAACCCTAACCGCCCACG ACGCCGCCGTCGCCTGCGTCAAATTCTCCAACGACGGAACCCTTCTCGCCTCCGCCTCTCTCGACAAAACCCTAATCATC TGGTCCTCCGCCACCCTCTCCCTCCTCCACCGCCTCACCGGCCACTCCGAAGGCATCTCCGACCTCGCCTGGTCCTCCGA CTCTCACTACATCTGCTCCGCCTCCGATGACCGCACCCTCCGCATCTGGGACGCCACCGGCGGCGACTGCGTCAAGACCC TCCGCGGCCACACGCACGCAGTTTTCTGCGTCAACTTCAACCCTCAGTCCAATTACATCGTCTCTGGCTCGTTCGATGAG ACTGTTAGGGTTTGGGAGGTGAAGACGGGGAGGTGCATCCACACCATCATCGCCCACACCATGCCTGTCACCTCCGTCCA CTTCAATCGCGACGGTACTCTCATTGTTTCCGGTAGCCATGACGGGCATTGCAAGATCTGGGATGCTACCTCGGGTACTC TGTTGAAGACTCTTGTTGATGAGAAGAACCCTCCTGTCTCCTTTGCTAAATTCTCCCCCAATGGAAGATTCCTCCTCATT GCTACGCTCAATGACACTCTTGTGAGTTTGGCTTCTCTTTTCTTTAATTTCTCTTTTCTTGAATTTAGTTTTTTCTGTTT TCTATACAATGGATACATATGCCTTTGCTTTTTTCTGTTTCAGGGGTTTGAAATTTAAGATTAGTTAAGTCCATTAATCT TCTTAAGTGTTGCTAGTCTGTCTAATAGCAGGAAAAGTTACGACCGAAATCGGGGAGGGGGTTGTAAATTGTAGCTGGCT AAAACCCGCATATAAAATAGCTTAAATAACCAAATTTCTTAGGAAAGTTCATACATGAGTGATAAAGTCTCACAAGACAT AACTCATAATTCATAGGAATGTCATATATAAGTCATAAAATACTAAATCCTAACACCATAAAACTTAGAAATCATTAAAC TTAAACATAAGTTCTCATCAAATCATAAAATTTAAACATTCAACTTAGGAAATTTGCTACATTAAAACAGAGGATAGGGG AGCTTCAAACGCAGAACAGGGGAGGAAGAAGAGCTGCAGGTGGCCATCGTTGCTGCCTCCGCGAGCCCTTGGTCGAAGTT GCCTCTAGTTTTTGAGGAGGTGAGACGTGAGTGACTTGTAAGTTGTAATGTCATATGAGAAGCATTGTGTCTCAAACCCG TAAAAATTAGGGCTTTTCCCAACTGGTTCGCTAGATTCGGATGTGCCTAAATTCCACAATCTCCTTGATCCTGATTTGGG TCCAATTTAGCGATTTGGGGCGATTTAGCAATTGATTTAAATCGTCCAGGGGTTGCAAATCGCAAAATTGTACGATTTAG TGATTTAAATCGCGATTTTGACTATCATGAGAGGCGCATATACTTAAGGTTAGGATCATAGAAAGAGCCAAAGAGATAAC CCATTTATCGGTCAAAACCCACTGAATGTCGGATATGCCTAAATCGCAAAATCTCCCTTAATACTGATTTTGTCTGATTT AGCGATTTTGGGGTGATTTAGCAAGCGAATCGCCCAAGGGTTGCAATGCAAAATCGTAAGATTTAGTGATTTATATCGGG ATTTTGACTACCATGATAGGCGAATATACTTAAGGTTAAGATCATAGAAAGAAATAACCCATTTATCGATCAAAACACGT TAAATGTCAGATATGCCTAAATCGCAAAATCTCCTTCAATTCAATTTTTTGTCCGATTTAGCGATTTTGGGGCGACTTAG CAAGCGATTTAAATCGCCCAGGGGTTGCAGATCGCAAAATCGTAAGATTTAGCGATTTAAATCGAGATTTTGACAACCAC AATAGGTGCATATACTCAATGTTAAGATCATCGAAAGAGATAACCTATTTATCAGTCAAAACCCGTTAAATGTCGTATAT GCCTAAATCGCAAAACCTCCCTTAATATTGATTTTGGTCTGATTTAACGATTTTTGGGCGATTTAGCTAGCAATTTAAAT CGCCCAGGGGTTGCAGATTGCAAAATCAGAAGATTTAGGGATTTAAATCGGGTTTTTACTACCATGACAGGCGCATATAC TTGAGGTTAAGATCATAGAAAGAGATAACCCATTTATCGGTCAAAAACCCGTTAAATTTTGGATATGCATAAATCGTAAA ATCTCCCTTAATCCTGATTTTGGTTTGATTTAGCGATTTGAGGGTGATTTAGCACTAAATCGCCCAGAGATTGCAAAATC GTAAGATTTAGCGATTTAAATCGCGATTTTGACTACCATGATAGCAGACGCATACCCTTATAGGTATTGTACTTGTTGAC ACAAATCAGGTTAAAATGACTCTGATTTATAATCCTGCTGGTTTGCTCTAAATGAAATTTATGTTTCTATTTAGGTAATG ATTTGAGATTGTGAATTAATTGCTAGTTAGTCCTTCTGGCATGTTTGGATTAATGAAATGATTACTTCCATTCTTGCTGT GTATCATTAAGCTGATACCTTAAGGCCCCATTTGGATGCTTATGGGAGATGTTAAGTCAGACAGAGGTAGAGAGGCCTTA GAAATATGTAGAACAGCAAACTGTGGGAGCTTTTGAATATAAGTTGTTGGTGCTTATAAAGGAAATAGATAAGGGAGCTT TTTGAAAAAAAATAGGAGCTGAAGTTGATTTGAACCTATGTAATAAGCTATTGTTAGAATATTTATATGACACTGTAGAT CATTTTAATTTTCTTTTTCTATAGGTTTTTTTTTTCCTTTCTAGCTGTTATTTGCTAAGCTGAGCGCTGGTTTCCTTTGA CATTTCACCTGACAATGATATTTCTGGTTGCAGAAGCTATGGAACTACTCAACTGGGAAGTTTTTAAAAATATATTCGGG ACATGTGAACAGAGTATACTGCATAACTTCTACATATTCTGTTACAAATGGGAGATACATTGTTAGCGGTTCAGAAGATC GATGTGTTTATTTGTGGGATCTTCAGCAGAAAAATATGATTCAGAAACTTGAAGGCCATACAGACACTGTAATATCCGTT ACCTGTCACCCAACAGAGAATAAAATTGCTTCAGCTGGCCTTGATGGTGATAGAACTGTGAGGGTTTGGGTGCAGGATCC TTGACCTTGAATAATGGAAAAACTGTAAGGGGATGATGCTGCCCTCTTATGTCTTCCCATCTGATATTGCCTTCATCTAC ATATTTCCTTTGATTTTTCATGATTTTTCATGTCTGATTTCAATATATTAGACATGAAAATCCAAAGGCAAGAACTTACA TAGAAAGATAAAGGTCTACCCTCCCCCACCCCAATGTAAAACCGAATACTCAGTGCTCCCTCTTTCACCAACAGACAGTT ATCATTATTTTTTGTTTTTTTATAGAATACTAAAATGGAATAAGTGACCATAAAATGATAGATGACATTTCGTCAATTTG ACACTATATCTGCATCCATCTTCCTTCAATTTGACAAGATTTTGTGATGAAGCTTACAACATTTCTTGTTCATTGTCGTG CATTTTGAGAGAGAGAGAGAGAGAGAGAGGGTTGCTGAACATAATGAAAGAG
CDS sequence (LotjaGi5g1v0167800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAACAGCAGCGACGAACCACCATACAAGCCGTACCGTCACCTGAAAACCCTAACCGCCCACGACGCCGCCGTCGC CTGCGTCAAATTCTCCAACGACGGAACCCTTCTCGCCTCCGCCTCTCTCGACAAAACCCTAATCATCTGGTCCTCCGCCA CCCTCTCCCTCCTCCACCGCCTCACCGGCCACTCCGAAGGCATCTCCGACCTCGCCTGGTCCTCCGACTCTCACTACATC TGCTCCGCCTCCGATGACCGCACCCTCCGCATCTGGGACGCCACCGGCGGCGACTGCGTCAAGACCCTCCGCGGCCACAC GCACGCAGTTTTCTGCGTCAACTTCAACCCTCAGTCCAATTACATCGTCTCTGGCTCGTTCGATGAGACTGTTAGGGTTT GGGAGGTGAAGACGGGGAGGTGCATCCACACCATCATCGCCCACACCATGCCTGTCACCTCCGTCCACTTCAATCGCGAC GGTACTCTCATTGTTTCCGGTAGCCATGACGGGCATTGCAAGATCTGGGATGCTACCTCGGGTACTCTGTTGAAGACTCT TGTTGATGAGAAGAACCCTCCTGTCTCCTTTGCTAAATTCTCCCCCAATGGAAGATTCCTCCTCATTGCTACGCTCAATG ACACTCTTAAGCTATGGAACTACTCAACTGGGAAGTTTTTAAAAATATATTCGGGACATGTGAACAGAGTATACTGCATA ACTTCTACATATTCTGTTACAAATGGGAGATACATTGTTAGCGGTTCAGAAGATCGATGTGTTTATTTGTGGGATCTTCA GCAGAAAAATATGATTCAGAAACTTGAAGGCCATACAGACACTGTAATATCCGTTACCTGTCACCCAACAGAGAATAAAA TTGCTTCAGCTGGCCTTGATGGTGATAGAACTGTGAGGGTTTGGGTGCAGGATCCTTGA
Protein sequence (LotjaGi5g1v0167800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANSSDEPPYKPYRHLKTLTAHDAAVACVKFSNDGTLLASASLDKTLIIWSSATLSLLHRLTGHSEGISDLAWSSDSHYI CSASDDRTLRIWDATGGDCVKTLRGHTHAVFCVNFNPQSNYIVSGSFDETVRVWEVKTGRCIHTIIAHTMPVTSVHFNRD GTLIVSGSHDGHCKIWDATSGTLLKTLVDEKNPPVSFAKFSPNGRFLLIATLNDTLKLWNYSTGKFLKIYSGHVNRVYCI TSTYSVTNGRYIVSGSEDRCVYLWDLQQKNMIQKLEGHTDTVISVTCHPTENKIASAGLDGDRTVRVWVQDP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 311 | 311 | 2.3E-73 | – | |
| Gene3D | 2 | 312 | 311 | 1.3E-124 | ||
| SUPERFAMILY | 10 | 308 | 299 | 8.14E-95 | ||
| SMART | 12 | 51 | 40 | 1.0E-9 | ||
| PANTHER | 13 | 311 | 299 | 9.3E-123 | – | |
| PANTHER | 13 | 311 | 299 | 9.3E-123 | ||
| Pfam | 15 | 51 | 37 | 2.5E-7 | ||
| CDD | 15 | 308 | 294 | 6.16104E-96 | – | |
| ProSiteProfiles | 19 | 312 | 294 | 70.367 | ||
| ProSiteProfiles | 19 | 60 | 42 | 13.884 | ||
| SMART | 54 | 93 | 40 | 2.9E-11 | ||
| Pfam | 57 | 93 | 37 | 9.3E-10 | ||
| ProSiteProfiles | 61 | 102 | 42 | 16.724 | ||
| PRINTS | 61 | 77 | 17 | 8.7E-5 | ||
| PRINTS | 80 | 94 | 15 | 8.7E-5 | ||
| ProSitePatterns | 80 | 94 | 15 | - | ||
| PRINTS | 80 | 94 | 15 | 1.0E-8 | ||
| SMART | 96 | 135 | 40 | 1.3E-11 | ||
| Pfam | 97 | 134 | 38 | 3.0E-9 | ||
| ProSiteProfiles | 103 | 144 | 42 | 18.629 | ||
| PRINTS | 117 | 134 | 18 | 8.7E-5 | ||
| ProSitePatterns | 122 | 136 | 15 | - | ||
| PRINTS | 122 | 136 | 15 | 1.0E-8 | ||
| SMART | 138 | 177 | 40 | 2.8E-12 | ||
| Pfam | 139 | 177 | 39 | 1.6E-9 | ||
| ProSiteProfiles | 145 | 186 | 42 | 15.688 | ||
| ProSitePatterns | 164 | 178 | 15 | - | ||
| SMART | 180 | 220 | 41 | 0.036 | ||
| ProSiteProfiles | 188 | 229 | 42 | 9.907 | ||
| Pfam | 193 | 220 | 28 | 0.2 | ||
| SMART | 223 | 265 | 43 | 1.3E-4 | ||
| Pfam | 224 | 265 | 42 | 2.6E-6 | ||
| ProSiteProfiles | 230 | 274 | 45 | 12.012 | ||
| ProSitePatterns | 252 | 266 | 15 | - | ||
| PRINTS | 252 | 266 | 15 | 1.0E-8 | ||
| SMART | 268 | 309 | 42 | 8.8E-5 | ||
| Pfam | 272 | 308 | 37 | 0.0015 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0167800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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