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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0170500 |
| Transcript ID | LotjaGi5g1v0170500.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine-protein kinase; TAIR: AT3G63280.1 NIMA-related kinase 4; Swiss-Prot: sp|A2ZMH2|NEK2_ORYSI Serine/threonine-protein kinase Nek2; TrEMBL-Plants: tr|V7BJC8|V7BJC8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0170500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:43899504..43902838) extracted from Lotus japonicus Gifu genome v1.2.
AGGTGACTTTGGTCTTGCCAAAATGTTAACATGTGATGATCTTGCTTCCTCGGTACGTGTTTTGGTCAAAATATTCTTTT GATCACTTTTACTTTATCTCTTACTGTGTTCTTGACTTGCTTTACACTTCAGGTTGTGGGAACACCAAGTTATATGTGCC CAGAGCTCCTGGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGTAAGATAGTACTATTTGTACTCTCA AGATCCTGTGGGCATAAAAACCCTTCCCCTTTCCCTGTTACAATTTTCTGTCAATTGCAATTGAAATTGGGTATAACATA AACATTGTGTCAGGATGCTGTGTATATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCTCTTGTAAGTTACTATGACTG CCAGTTGTTCACTTCTATTTTAATGAACCATTATTTGCAGAACTTTTTTATCATAAGGGGAACCTGGTGGGGGGTCAAAT AATTCATTTGAAATGTTGAACAAAATATTTACGTTACTTCATCATTCATGTCCATGGTGATGTCTGAGTTATTTCATTAT GGAGAACAACATCAAATCAATGACTTTTTGTTGTCTTCTATTCGAGCAGGATATGCAAGCATTGATTAACAAAATAAACA AGTCTTTAGTGGCTCCACTACCAACAATGTATTCTGGTTCTTTGTGAGTACTCTATTTACTAAGAATCTTATGTTAATCT TTATCTGTATTTTCCCCATTTTATGAAGCGGTTATGTTAGTTCCCATACCTGCAGCATTTGAGTGATGTCTGTGCCTGGT TTATTGGGATATGCATATATTGCTGATCCTGAAAAAAATGCATCCATTAGTTTGTCAGACGGAGACCTCCATTAGATTTT GTCTTACATTTTCTAATGGACCCAAAGTTGTTGCGAATTGGAAATTTAAGTGATCTTGCATCCATGAAGTGTTTATGTCA TCATTTTGAAAACATCTACACCTTATCTTTCAATTCACTTAGTATTAGCATTCTTTGTGTCAGAAACATGTACAGTATGG GGTTTGGTTTACCAATTTACATTGTGCAATGATAACCTGCTGGTTTAGCAGCAATCAACCTTGAAACAAATCCTAATACA CTCCCAGATGTGGATATATCTTATTGACTCATTCTCAGTCTTTGTACTTGTTATTTGTTGCTGTTTATTCCATTGACCCA TTAAATGACTTTATGTAACTTGATGTATATTGTTTTCTTCTTTCAGTCGAGGCCTTGTGAAGAGTATGCTACGGAAAAAT CCAGAGCTTAGGCCAAGTGTATGTTTTCTCTCGAGAATTTCTTTTATATTTTTCTATATGTAGATTAACTTAGGAAAAAC TGGTCTATACAAAGTAAGTGTAATGCATATCTTGAGTTATAAAGATGAGTCAGATGTCCTAACAGCAGAATATGTTTAGA AGCAGAATATGAGCCAATTGTTATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTAAATTGTTTGTCAG CGTGTAATTTGCTCTTTTTCCATCATCATATAATGTGTTTGTGCTTATTCTGCTTGGTTACTTTGTTTTGGTAGATTTAT TCAAAATGAGTTAAGCGCAATTTGTTTTCGCAGGCAGCAGAGTTACTCAATCATCCACATCTTCAACCTTATATTCTTAA AGTTCACATAAAACTAAATAGCCCCAGAAGAAGTACTTTTCCTTTCCAATGGGCTGACTCAAACTATGCAAGGAGAACAC GGTTTGTAGAGCCAGCATCTTTTTCCACTCTTTCTGTCTCCGACAGAGGTAAACGATTGTCATTCAGTAATGACAGGGCC TTGAATCCTAGTATTTCTGGAACTGAACAAGGTTCTCTGTGTTCTACTCAAAGAGCACAAGGATTCTCTGCTTGTTCAAA AGACAAACATTATGAACAATCTGTTGGCTGTGTCAGTGAAGAATGCAATATGCCAAGAATGAGAACAGCTAAGGAATCTG CCACCCCCAGACGACACACAATACCATCGAAGATACCCCGAATTAGTTCCAAATATGATTCAGTAAGTTTAAGCACACTA ACAACACAGCAGCTCCATTTGTATTCATTTGATAATATAGTGCTAATTACGGAGTTTTCTAATTACATATCACCTATATT TCCTAACTCGAGTTTAGTTACTCTTATACGCAGATTCTCTTATCCATATTAATTTTCAATAGAGCTTAACTTGTCTGGGT TTCTTTGTTGAATTAATAGTGTGTGTGTGTGTGTGTGTTACTGAAGATTCTGTGCATCGATTTATTTGTTTGCTTATCAT CATTTCAGCTTCCAGCATCTTATACTCCAGCTGGTAAACTTACCCCACCAACTCGCAGAGCTTCCCTTCCACTGCCTACA ACAACCATGGCCACTACTACCCCTTATAGAACCAGTGTCGGTTTTCTTCGTAGTGTGGATTCTCCTAATATTTCTGTTAA TGCGCCACGAATCGACAAGATGGCTGAATTCCCTCTGGCCTCCGGTGAGAATATTCCTCTCTTCCCTGCTCGTAGAGCTT CATCAACATCAGCTCAGTGCTCTTCTGGTTCCCCAAGGAGCATTATTGACTGCACAATCACAAAGGACAAATGCACAATC CAGGTTGTGGACAAAGCCAGTGTCCCTACCAGTGGCAGTGATGGTGGTGCTGCAGTTTCACATAGCAACGAGTGCTCTGA ACATGTAGCAACTGCTGTTTCAAGCCGTAGCCATTCCTCCTCTGCTGAGTCTTGCCAGCGCAGGTTTGACACCTCGTCTT ACCAGCAGCGAGCGGAGGCATTGGAGGGGTTGCTTGAGTTCAGCGCACGGCTCCTGCAACAGCAGAGGTTTGAAGAGCTT GGCGTGTTGCTGAAGCCGTTCGGGCAAGAGAAGGTTTCTCCAAGGGAAACAGCTATTTGGTTGACTAAGAGCTTCAAAGA AACTGTGGTATGAGGCTTTCTGATGCACATGCACTTTTGTGATCACTAACAACAGTGTAAATCAATGTAGCAGTAGACAG TAGTACTTTATATGTAGCTAGAATTTGAAGGGTAACTTAGCTTCTAATCTTATAATTCTAGTTGACTCCGTAGGTAGGCA TTTCTTAGACAGTTTCAACTTTCAAGTTTAATGTTAATGACTTTCTCATCAAAATATCAGTATAGATGTTCAAATTCTTC TGTTTGCGGGAAAAGAAACTCTAATTTAGTTTGTAATGTAGGCAATGTCAGTATGAAAAAAGTTTATCCTTCCATTTTGT GATGTATTTTCACATTATCGAAGTTTTTTTTAGGATACACATTATCTAAGAAGTT
CDS sequence (LotjaGi5g1v0170500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCTTGCTTCCTCGGTTGTGGGAACACCAAGTTATATGTGCCCAGAGCTCCTGGCTGATATACCCTATGGCTCTAAG TCAGATATCTGGTCTTTGGGATATGCAAGCATTGATTAACAAAATAAACAAGTCTTTAGTGGCTCCACTACCAACAATGT ATTCTGGTTCTTTTCGAGGCCTTGTGAAGAGTATGCTACGGAAAAATCCAGAGCTTAGGCCAAGTGCAGCAGAGTTACTC AATCATCCACATCTTCAACCTTATATTCTTAAAGTTCACATAAAACTAAATAGCCCCAGAAGAAGTACTTTTCCTTTCCA ATGGGCTGACTCAAACTATGCAAGGAGAACACGGTTTGTAGAGCCAGCATCTTTTTCCACTCTTTCTGTCTCCGACAGAG GTAAACGATTGTCATTCAGTAATGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAACAAGGTTCTCTGTGTTCTACT CAAAGAGCACAAGGATTCTCTGCTTGTTCAAAAGACAAACATTATGAACAATCTGTTGGCTGTGTCAGTGAAGAATGCAA TATGCCAAGAATGAGAACAGCTAAGGAATCTGCCACCCCCAGACGACACACAATACCATCGAAGATACCCCGAATTAGTT CCAAATATGATTCACTTCCAGCATCTTATACTCCAGCTGGTAAACTTACCCCACCAACTCGCAGAGCTTCCCTTCCACTG CCTACAACAACCATGGCCACTACTACCCCTTATAGAACCAGTGTCGGTTTTCTTCGTAGTGTGGATTCTCCTAATATTTC TGTTAATGCGCCACGAATCGACAAGATGGCTGAATTCCCTCTGGCCTCCGGTGAGAATATTCCTCTCTTCCCTGCTCGTA GAGCTTCATCAACATCAGCTCAGTGCTCTTCTGGTTCCCCAAGGAGCATTATTGACTGCACAATCACAAAGGACAAATGC ACAATCCAGGTTGTGGACAAAGCCAGTGTCCCTACCAGTGGCAGTGATGGTGGTGCTGCAGTTTCACATAGCAACGAGTG CTCTGAACATGTAGCAACTGCTGTTTCAAGCCGTAGCCATTCCTCCTCTGCTGAGTCTTGCCAGCGCAGGTTTGACACCT CGTCTTACCAGCAGCGAGCGGAGGCATTGGAGGGGTTGCTTGAGTTCAGCGCACGGCTCCTGCAACAGCAGAGGTTTGAA GAGCTTGGCGTGTTGCTGAAGCCGTTCGGGCAAGAGAAGGTTTCTCCAAGGGAAACAGCTATTTGGTTGACTAAGAGCTT CAAAGAAACTGTGGTATGA
Protein sequence (LotjaGi5g1v0170500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MILLPRLWEHQVICAQSSWLIYPMALSQISGLWDMQALINKINKSLVAPLPTMYSGSFRGLVKSMLRKNPELRPSAAELL NHPHLQPYILKVHIKLNSPRRSTFPFQWADSNYARRTRFVEPASFSTLSVSDRGKRLSFSNDRALNPSISGTEQGSLCST QRAQGFSACSKDKHYEQSVGCVSEECNMPRMRTAKESATPRRHTIPSKIPRISSKYDSLPASYTPAGKLTPPTRRASLPL PTTTMATTTPYRTSVGFLRSVDSPNISVNAPRIDKMAEFPLASGENIPLFPARRASSTSAQCSSGSPRSIIDCTITKDKC TIQVVDKASVPTSGSDGGAAVSHSNECSEHVATAVSSRSHSSSAESCQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFE ELGVLLKPFGQEKVSPRETAIWLTKSFKETVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 16 | 101 | 86 | 9.5E-8 | – | |
| PANTHER | 32 | 431 | 400 | 3.5E-154 | – | |
| PANTHER | 32 | 431 | 400 | 3.5E-154 | – | |
| SUPERFAMILY | 34 | 127 | 94 | 1.48E-9 | ||
| MobiDBLite | 222 | 246 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0170500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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