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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0171400 |
| Transcript ID | LotjaGi5g1v0171400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock transcription factor; TAIR: AT3G22830.1 heat shock transcription factor A6B; Swiss-Prot: sp|Q9LUH8|HFA6B_ARATH Heat stress transcription factor A-6b; TrEMBL-Plants: tr|A0A0B2P8E5|A0A0B2P8E5_GLYSO Heat stress transcription factor A-6b; Found in the gene: LotjaGi5g1v0171400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:44006388..44009700) extracted from Lotus japonicus Gifu genome v1.2.
GAAAGTTGAGTCGCGGTAGTTGTAAAGAGAAGGTGTAAAGTGTTAGTCTATTATCCAATAAAATGTCTCAATGTGCCTCC CAACCAATCAAAATATTTGTAAAATCAGCACGGCAACCAGAACCAATGTTTTCATACCACACTCACGGGGTCCTCCTCCC CCATCACAATGCCCCTATGTAACTTCCAGAATTTTCCAAACCAAGGGACCATCCACTCAACATCCATCTATCTCATCCAA TTGCAAACCAGGAAAGTGCTAAATCAAATAATTTTGCTCCCATGACATCTAGAACTTTCTATTAAATTGTTCTATTTTCA TTGCACAATACTCCACTATTTCCTTCTATATAATAATCCCTCAAACCCCTCACTCTATAGTCCATGCTATATTGTTTCTA GAAATGGTATCACAAACAACCAATCCATTTTGACGGCTTAAACAACTTCCCTTCTCAACAGGGAATGGAACAGGATCATC TGCACTTAATGTTTTTTTTTCTTCATGTTCACTCATCACTATATATAATCACTCTCTCTAACCTCGTTTGGATTATGTTT AGAATTTCCCCACTTCATACCTTTTTCTTCCTGCACAAATCATCACCTGCATAAAGTTACCTATCTCTATCTGCTACTCA AGCATCAATAACTGAATTCAACCACAAATCCATCAAATAGACCATGAATTATATGTATTCAGTGAAAGAAGAGTACATGG CAGTACCATCATCATCGTTTCAATCTGGAGATAAATTCCCATCAACGATTCAACCTCCCCAGCCAATGGAAGGACTTCAT GAGATAGGACCCCCGCCATTCCTCACCAAAACGTTTGATGTGGTGGACGATCCAGCTACCAACCATGTAGTTTCGTGGAG CAGGGGCGGCACTAGCTTTGTGGTTTGGGATCCACATGCTTTCTCGATAGGTCTTCTTCCTAGATACTTCAAGCACAACA ATTTCTCAAGCTTTGTGAGGCAATTAAACACATATGTAAGTATTGTTGTTTCTTCATCCATGGCTTATTTTGAGTTTCAA TTTCAAGTTTTAATGTCTATAACTGTAGGTTTAGTGTTTTACTTAAACTAAATAAAGAAACCAATTCAAATTTTGTTATG TGCATGGAAACGTTTTAACAATTGATTCTGAGGCCAAAATCATTTCTAGAGTGGAGCTTCTGATGAGTAGCTTCTAGGTG TCAGAATTGATTCGGAAGAAAAATAAGCTGATCTAAACGTGCTAATTAAAGTGTTAGAAATTCAAGTCTAAGTGATGAAG TCTCACCTTGGTTAATAATGAATTATTTAAGAACAATACAAGTGTAAAAGACCCACAAACTCATCTTTTGGATCAATATG TGGTGTCATATCATTATTATTCTTTATATAAAGTGTGGGATCATCATTATGATTCTGGTCTATCACTTAAGCCCATTAAA ATAGTTCTTTTGGTCTTGAGCTCCCCTCATACTCTAACATAAGGTTCACTTCAAGCTTTGGGGTAGAAAAGTTATCAGTT GAATTTTTTCCAGTAAAAAATGAATATCCAGCTATGCTTTATTGAAAGATTAAATTCATTTTTGTTGCAATTACAGTTTC AAATCTATTCTGAGTTTGTCCAACTTCGTGTTTTTTATATTGATTGTGGTGTTCAATGTTATAGGGATTTAGAAAAATTG ATCCAGATAAATGGGAGTTTGCAAATGAAGGATTCCTAAGAGGCCAGAGGCACCTGTTGAGGAACTTAAGGAGAAGGAAA GCACCTTCCCAACAAGCACAAGGTCACAGTGTTGACGTTAGCCGTTTTGGACTTGATGAAGAAGTTGATCGTTTGAGGCG CCAAAAGCGGGAATTGATGATGGAACTCGTGAATCTTAGAGAGCAGCAACACAATACCAGAGTTCACCTTCAGGAGATGG AGCAAAGGCTAAAAGGAATACAAATCAAGCAGCAGCAAATGCTATCATTCTTAGCCAGAGCTATGAAAAATCCAAACTTC ATACATCAACTACTCCAACAAAAAGAGAAGAGAAAGGTGCTTGAAGAAGCCATGACCAGAAAGAGAAGGCTAATTGAGCA AGGAACTAGTTGTATTGGAGAATCTAGCATTGCAGGTGAAGGGAGGGGAAGTGTTAAAGTTGAGCCCTTAGAACTTAGTG ATTATGAATTTGGGGTGTCAGAGTTGGAAATGCTAGCTATGGAAATGCAGGGTTTTGGAACTGGGAGGACTGTAGATCAA GAAGAACGACCGGAGGGACAAGAATCACAAGACGGGGTGGACAGTATAATTGATGAAGAATTCTGGGAAGCACTATTGTT TAGTGAGAAATTTCCGGGTCAATTAGACTTCGCAATTGCATCTGTTGAAGATAAAGACTAAGATGAAGATGTCAATGTGA TTGCCAATCGCTTTGGTTGCTTGGAATCATGTCATTATGTGAACAACTGAATCAAGATTGGTTAACCCTTTCAGTTCACC ATGTTCAAGTCTACTTCAAAGGAAGCTTCCAATGGTGGAGTCATTCTAATTGGCAAGACAGTAAAATTACAAGCAGAAGG GAAATAATTTATTTTAGTGTCTTTAAACTATTATATGTTCTTTTATAGCAATTGGTTAAACCCTGAATTTTCATTTTCCT TGATGTTTAATAAGGTAGGTTGCTGCTGATGCTTGGACCAGAATCATTGGTAGTCATATGATAACTGTCATTATTTATCT CAAGGTTCAACTTTTCCTACTCCCTCAAACACATATATGTATATGTAATTATGCATAGTGCATCATATCAAGTTATCAAT CCAGATATGACATTACCTGTTGTAATTTTATTTTGATTAACTTAATGAATGTAGATTATCCAGAAGATGTAGAATGGACA AGAAGTAGCTGATTTCCAACAATCACAAATGTTGATTATCAAGAGCCAGTTGGTGGTTATCTTTGTCGGTTTGATTATTC TCCCCTCCTTTTGTTTCCAGTGTGTGTATGTGTATGTGTATGTGTTTGTCTTTTGCTATTCTGGTCGGTGGAGTACTTTC ATGGTTGATGTTACATCTGTAGCATGTGATTAGGTATCATCACAATTTCATGTTTCCATTCTCATAAAATAAATCATTGA TGGGCCTTGATAGAAATGTTTATTTGTGAAGTAGCAGATTGCTTCACGTTTCTGAGCCACTGGTTATATCATCTGCAAAT GTTAAGAAGTGCAAGGTTAGCTACTCCTATTATGTTCGGGAGTTTTTGAAATACATTGAAGGACAAGGTTCTCAAATACC CTGCGCAGTTTTTGTAGTTTTAATCACTTTTGC
CDS sequence (LotjaGi5g1v0171400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTATATGTATTCAGTGAAAGAAGAGTACATGGCAGTACCATCATCATCGTTTCAATCTGGAGATAAATTCCCATC AACGATTCAACCTCCCCAGCCAATGGAAGGACTTCATGAGATAGGACCCCCGCCATTCCTCACCAAAACGTTTGATGTGG TGGACGATCCAGCTACCAACCATGTAGTTTCGTGGAGCAGGGGCGGCACTAGCTTTGTGGTTTGGGATCCACATGCTTTC TCGATAGGTCTTCTTCCTAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTGAGGCAATTAAACACATATGGATTTAG AAAAATTGATCCAGATAAATGGGAGTTTGCAAATGAAGGATTCCTAAGAGGCCAGAGGCACCTGTTGAGGAACTTAAGGA GAAGGAAAGCACCTTCCCAACAAGCACAAGGTCACAGTGTTGACGTTAGCCGTTTTGGACTTGATGAAGAAGTTGATCGT TTGAGGCGCCAAAAGCGGGAATTGATGATGGAACTCGTGAATCTTAGAGAGCAGCAACACAATACCAGAGTTCACCTTCA GGAGATGGAGCAAAGGCTAAAAGGAATACAAATCAAGCAGCAGCAAATGCTATCATTCTTAGCCAGAGCTATGAAAAATC CAAACTTCATACATCAACTACTCCAACAAAAAGAGAAGAGAAAGGTGCTTGAAGAAGCCATGACCAGAAAGAGAAGGCTA ATTGAGCAAGGAACTAGTTGTATTGGAGAATCTAGCATTGCAGGTGAAGGGAGGGGAAGTGTTAAAGTTGAGCCCTTAGA ACTTAGTGATTATGAATTTGGGGTGTCAGAGTTGGAAATGCTAGCTATGGAAATGCAGGGTTTTGGAACTGGGAGGACTG TAGATCAAGAAGAACGACCGGAGGGACAAGAATCACAAGACGGGGTGGACAGTATAATTGATGAAGAATTCTGGGAAGCA CTATTGTTTAGTGAGAAATTTCCGGGTCAATTAGACTTCGCAATTGCATCTGTTGAAGATAAAGACTAA
Protein sequence (LotjaGi5g1v0171400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNYMYSVKEEYMAVPSSSFQSGDKFPSTIQPPQPMEGLHEIGPPPFLTKTFDVVDDPATNHVVSWSRGGTSFVVWDPHAF SIGLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFLRGQRHLLRNLRRRKAPSQQAQGHSVDVSRFGLDEEVDR LRRQKRELMMELVNLREQQHNTRVHLQEMEQRLKGIQIKQQQMLSFLARAMKNPNFIHQLLQQKEKRKVLEEAMTRKRRL IEQGTSCIGESSIAGEGRGSVKVEPLELSDYEFGVSELEMLAMEMQGFGTGRTVDQEERPEGQESQDGVDSIIDEEFWEA LLFSEKFPGQLDFAIASVEDKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 26 | 325 | 300 | 4.6E-138 | – | |
| PANTHER | 26 | 325 | 300 | 4.6E-138 | ||
| Gene3D | 39 | 137 | 99 | 2.1E-36 | ||
| SUPERFAMILY | 42 | 135 | 94 | 5.44E-34 | ||
| SMART | 42 | 135 | 94 | 5.8E-58 | ||
| PRINTS | 46 | 69 | 24 | 1.1E-19 | ||
| Pfam | 46 | 135 | 90 | 6.8E-28 | ||
| PRINTS | 84 | 96 | 13 | 1.1E-19 | ||
| ProSitePatterns | 85 | 109 | 25 | - | ||
| PRINTS | 97 | 109 | 13 | 1.1E-19 | ||
| Coils | 151 | 192 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi5g1v0171400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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