Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi5g1v0174900 |
Transcript ID | LotjaGi5g1v0174900.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box/LRR protein, putative; TAIR: AT3G54650.1 RNI-like superfamily protein; Swiss-Prot: sp|Q8W104|FBL17_ARATH F-box/LRR-repeat protein 17; TrEMBL-Plants: tr|A0A072VKR1|A0A072VKR1_MEDTR F-box/LRR protein, putative; Found in the gene: LotjaGi5g1v0174900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:44647186..44652874) extracted from Lotus japonicus Gifu genome v1.2.
AAAACCACAAAGCACGTTAAACAAATGTTTAAAAAAAATTAAAACAAGCCTCGTCGAAAACAATACAAAAAGCGCGCCAA CTCTCCCGCGCTGTGTCTTATATTTTACTCTCATCATCATCATCTCACTTTCCTCCATTTCCCTAAACCACACAAAATGC AACGCAATCACATCGCCGCCGCAGCGCCACCACTAACCACCGCAAGCGGCGACACCACCACCGCAACCGACGCTAAGCGC GGGAAAAGACGCGGCAGTTACAACTGCGGCCGATGCGGTCAACCGAAGAAGGGTCACGTCTGCAACATCAAGACCCCTGT CGCAGTCTCCGACACCGCCGCTACTCCTACCGATTCATCTCTCTCGGCGATTTCCGCGCCGTCCTCGGCTGCTTCCGCGC TCCGTCAGCCGCCGCCGTCGCGGTTATGCCGCGCGCTATCGTTCGACGATCTTGTCGATCGTGGCGCTGGCGGGGTCGAT CTGGTGGAGCCGGATGAGGTGGCGGATGGAGATTCGTTTCACGAGGAGGATCTGGATATGGATCTGGATATTGACCCGTG CGGGTTGCCGGTGAGTCTTATGTGGGAGGTGATGAGGAGGCTGCCTCCGGCGGGGTTGTTGGCGGCGGCGAGGGTGTGTA GAGGTTGGAGGGAGACGGCGAAGAGGCTTTGGAAGGCGGCGGAGGAGCTGAAACTTAGGGTTCCAGCGAATGTGCAAGTC GGATTCGTCGCGTCCATGTTGCAGAAATGTCCAGGGATTGTGAGGCTCTCTCTTCGAATGGAAAGGTGTGTGTGTTGGAA TTTTGTTTTGAATCGATCGATGCTTCCAGATCTGCGATTGTGGTTTGAATGAACGAATGAAATTAAGCAAAATCGAAATG TATAACCTAAAATCTGTTAATCGGAACATTGCACTTCAATATAGTGCTAAAATGCAATGCTAGAGTAGATCGGAAAACAT AGGTTGGTTCGTGAAGATCGATGCAGAATCTGAATCTACATGAAAGGAACAAGAAATAAAGGGATTTTGAAAATGGGATT GTCATCGCATGGTCTATTTGTTACGCTGCACTATTTTTTTTCTGGATTTTTCATTGTGTTGTATGTAAATCTAACTGGTC TGATGTTGCAGTGATTTCGATTCGACGATGCTGGCTTGCATTGCGTTCTCATGCCCTAATTTGGAATGTATGGAGATCTG TATATTTGATACTGCGACGAATCGGATCAATGGGTAATACTCATGCTCTTATTATTACAATTTTTTTAACCTATTTTTTA TTTGTATGGAAATTAAGTTTAGGTTTTGAACATCTGAGCAATTGAGAATGCAATTAACGCGCGGTAGTAATTTTATACAA TGTGAACGTCAGACCTGGAAATTCATTAGATAAAGCCACAGTAAACCAATTGGTTTTGCATAGGATTCAAGAATTTTAGT TGTGTTTGACATTGTTCTATGGGGGTAATTGTGGCTCTTCAGTACTTTTGTCTTGTACGGTCACCCTTCATAGAAATTTT GATTTATGATTTGTGGTCAATCTTCTACATTCTCATCATTCTAGATTCTAGTTGTTTGAGCCCTTCATATGCGGTAGGAG CTTAGATTAGCGTACCGAAGGTTAAACAAAGAATGCTGCTTTTCACTGATTAGCTTTATCTGTTGTTCAACAATGAAAAT GCAGGGATGAGTTAAGCCGATTTGTTGCGGATAAAAGAAGCCTCAAAAGCCTCAAGATGGAAGGCTGTTCGAATCTGGGG GGTTTTGCCCTCTGTTCGTCTAGTCTTTCTACACTTTGGCTCTCTGATCTGCACTCTCTTTCTAAGATGGTGATTATTAT CTTTTCTTATCTCGAGTGATCGATTTTAAATTGATAATTCCCTCTGAGCATGCATACTGAGTGAACTGTAGTTACTAATA GATGCTTTTAAATGTTAGGTATTTAACTGTCCCCAGTTGAGAGAGATTTCCTTGGAGTTTTCTTCCCAAGATGATGATGG TACTGATCTCATAACAATGATTGAAAGTTTGGGAAGAAGCTGCTTGAAATTGCAAAACATACATATAGCTTCAGTGCGGC TTTCTCATGCTGCTGTGCTTGCTCTTACAGCTGCTCAGTTGAGGTTTGTTATCTTTTGGCATTTTGATCTCTATTTTCCA GTTGTTATACGTATTATCCATTCATCTTGAAATTCCTTCCCTTATTTAAGACTAAAGTTTGTAATGTGTAACGCCTTGAA CTTTCTATTAGTATGAGTTCACACTTCTGTGGTGTATGAACTAAACATGTAGGAGGATGTCCACCTTTATACTGTGGCTG TGTGCTCCACATGGTACATGAGAAATGAAAAGAAACTAGAAAACAAAACTATAACACCTAACATGCATTCATGTAAACAG AAATAATAAGTAGGCAATGACCCAGTCTTAATTCTATTTCGAAATTTGTATGTATATCTAAAATCCATATCCTATAAGTC TATAACTGATTGACAGGTTATATATTGGTCAAAATGCCATTCTTATCTGTTTTTTCCTCCCAAATTTGTACTATAGTGAG GCAGTGTTAATAGCTTTTACAAGCATATCCACATTGTTGGGAAGCATACTGAAAATTTGTTTACAATATTCAGGGGTCTG CGAATGCTCTCTCTGGTTCTTGGATCTGAAATTACTGATGCATCTGTTGCTGCAATTGCGTCAAGCTATCCAAATCTAGA ATTGCTTGATCTCAGTGGGTATGCATTTGTATCCATTCTAATTGCTAACAAATTTTCTATTGGAGTTCTGAAAGTGTATA TACCTTGAAGATGAAAAAAATCTGATAGCAGTCAAGAGACTATATGTAAATTCAAGAACATATATTTCAAGTATGCGTTT GTGTCTTGAGTTCTACCTCTGTTCTGTATTTTTCTAATGGATACATTTTTAACAGATCTGGCATAAGTGACAGCGGAATT GGAATGATTTGCAATGTGTTCCCTGAAACACTTGCCAGACTCCTCCTCGCGCTTTGCCCAAATGTTACTTCAAGTAATTA CCTGTTGATCAATATCTGATACTGTCGATATTTGCTTAAGTTTCTGCCTACTAATCTTCTGTGACATGTTTCAGGTGGCA TTCAGTTTGCTACAGCTCAGTTACCGCTCCTTGAACTTATGGACTGTGGCATGACTATATGTGATCCTAATTCCTTAAAT TTGCCTGCTGATGAAAATGACGAATCTCAGAAAACATCCAGCACTAATCTCCACCTCATAAACCAAAAGCTGATCATCAA GCATAGCCGTTTAAAGAAACTCAGTTTGTGGGGTTGTACTTCTTTGGATGTAAGTTCCATTATATTGAAGACATGCATTG CATTTTCTTTCTTAGGCTTCTAATCTTCAATTTCTTCTCTTCAACTATCATGCAGGGTCTATACTTAAACTGCCCACAAC TCAATGATCTCAATCTAAATTCTTGTAGGAATTTGATTCCAGGTAGTCATTTCATGTCCCTGTTTTGTAATTAACAGCTG AAAATTTGATGCAACTTATCAGAATTTCCTTGAAAATAGTGAGATTGATTATTTATTAAATTGATTGGTTCAGAGAGGCT GCTTCTTCAGTGTCCCACTTTAGAAAATGTGCATGCATCAGGTTGTCAGGATATGTTAGTCGAGGCTATCCAAAGTCAGG TAACAAGCAGTTGTTCAGATGTTTTCCTCCATTATTAATAAATTAATGTGCTCTTTGTGACATGAGTTTCATGAATTATT TTTGGATCCAAAGTACTAGATAGCTTGAAGAAATTTGCAGTTCATGAATAAGCATACATACTCTGACCTCTTTGGTTTGA TATCCTCTATTCCTCCTATTTCTAATATAAAATATACTTGATGATTTGCAGGTCCGGGATGCATGTTCTTCTATGGAAAA CCAATCTCCTTCTAAACGTCTACCTGATGGCTCTAAAAGGGTTCGGGTTCCTTATTCACTTAGCAGTGAGGTAAAGCTAG AAAGAGATTAACGCCGTAGAGCATATTTTAATGTACCTCTTTTTTGGGGCTTGGGTGGTTAAGTTGAAACAATATTTACT AGTAATCGATCTCCATATCAGGCATACTGTAAGTATGTGCACCAGTGGTAAAGGAAAAGAAAAATTTGAATTTAGAACTA GCATAGTTTTCTTAACTGGTGTTATATGCATTTTATTGTTACACATGAAGATGATTTTATTTTGAATTTGAAGTTAACGC GCAATCGTTTTTTGGTTTATTGCAGACACCTGAACCTGAAAAAAAGCGTAGGAGGGTGGATAGAAGGCTTTGCAATGTGC TAGTGGATCCCCCTTGAGACTGATTGTACTGTATACATGTGCAGTATCTCTTGTATGTTTACAATAATCAAAATTCTAGA TGTATTATCTATATCCCCTAGCTACCAAACAGGTCATAGTTTTTCAAGCTAGGCTCTCAAACTGTTCATCTTGTCGCCAA GAGATGTTCATGGTTAGCAATGTTGTTATTTGAACTTTGGATGACTACCTCATTTTTTAATAAAAAATTTATGGGGCCAT CGCCTACATAAATGTTCACAGACGTGCTGTGAGCTGTGGGAATATTTGTCTACGAGAGAAACAATACTTACTCTTCAGTA CTACAATAGCACCAAAGTTTTTATCCTCTCCTTGATTTTGGTGTCCAATACTCTAGAAGTTAGTAGGTTACACCATGAGT GAAAATGAACATGTATGGCTGGCCAAGTTGCACATTGAATCCAAATGAACATATATACGTGTCAATACCTATACATTCAA TGTTCTGACACTAGCCCGGATTGTTATTGTAACTAACAGTAACAATTTCCCTTTGCACCCACTACCACTCCTCTTCTTAT CTTGATCCTATCCCACCCATTTTTCCTTCATCCAAAACTCTTGAACCTACTAATCCTTTGGAGCCTCAACCTGTACATGA TCAACCTACATCTCAATTCTCTCCACCTCTTTCTTCTTTGCCTCTCAACTCTACTGCACCTGTCAGGAGATCTCAGAGAG CACTACAAGCTTCTCAGTATTTGGCTGATTATCATTGGTTCTCTCAAATCGCTCAGCAGTATCTACATCTTCAGAGATCA GGTATCCCTTATGTGGTGTTCTCTTATTCGTCTTTATCTCCATCACAGAAGTGTTATTCTTTAGCTCCTTCCTTGATCAC AGATAAGGATGCAATCTACACTCTTGTTGGAAGGAAGCTATGATACTGAATTAGCTGTCCTGCATAACACCAAAACTTGC ACACTTGAAACTTTGCCTCCACACCATTATCTAGTGGCTTGTAAGTGGGTTTTCACGAAAGAATAAGGCAAAAGGTCTTG ATTTCCTTGAAACATGTAGACACGTGGTTAAGATGACCACAATTCAAGTGTTGCTTGCCTTAGCTGTTGTTAACAATTGG TTCCTCAAGCAAACTGGACGTAAATACAACTTTTCTTCATGTTGATGTGAATGAAGAAGTTTATTTGGAACCCTCACCTG GATTGTGTTAGGACCCTATTTCCCTAACAATGAACAATAAGGAGAAACAGAGGAAAGAATGCAGTAAGTGATTGTTTATT GAATGAAATTGGCTGAATACAGAGAAGGAATGGTATTCCTATCCTGACAAGAGCTGTGCTCCTTATAGGAAGCTCAGAGC TTCCTATCC
CDS sequence (LotjaGi5g1v0174900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAACGCAATCACATCGCCGCCGCAGCGCCACCACTAACCACCGCAAGCGGCGACACCACCACCGCAACCGACGCTAA GCGCGGGAAAAGACGCGGCAGTTACAACTGCGGCCGATGCGGTCAACCGAAGAAGGGTCACGTCTGCAACATCAAGACCC CTGTCGCAGTCTCCGACACCGCCGCTACTCCTACCGATTCATCTCTCTCGGCGATTTCCGCGCCGTCCTCGGCTGCTTCC GCGCTCCGTCAGCCGCCGCCGTCGCGGTTATGCCGCGCGCTATCGTTCGACGATCTTGTCGATCGTGGCGCTGGCGGGGT CGATCTGGTGGAGCCGGATGAGGTGGCGGATGGAGATTCGTTTCACGAGGAGGATCTGGATATGGATCTGGATATTGACC CGTGCGGGTTGCCGGTGAGTCTTATGTGGGAGGTGATGAGGAGGCTGCCTCCGGCGGGGTTGTTGGCGGCGGCGAGGGTG TGTAGAGGTTGGAGGGAGACGGCGAAGAGGCTTTGGAAGGCGGCGGAGGAGCTGAAACTTAGGGTTCCAGCGAATGTGCA AGTCGGATTCGTCGCGTCCATGTTGCAGAAATGTCCAGGGATTGTGAGGCTCTCTCTTCGAATGGAAAGTGATTTCGATT CGACGATGCTGGCTTGCATTGCGTTCTCATGCCCTAATTTGGAATGTATGGAGATCTGTATATTTGATACTGCGACGAAT CGGATCAATGGGGATGAGTTAAGCCGATTTGTTGCGGATAAAAGAAGCCTCAAAAGCCTCAAGATGGAAGGCTGTTCGAA TCTGGGGGGTTTTGCCCTCTGTTCGTCTAGTCTTTCTACACTTTGGCTCTCTGATCTGCACTCTCTTTCTAAGATGGTAT TTAACTGTCCCCAGTTGAGAGAGATTTCCTTGGAGTTTTCTTCCCAAGATGATGATGGTACTGATCTCATAACAATGATT GAAAGTTTGGGAAGAAGCTGCTTGAAATTGCAAAACATACATATAGCTTCAGTGCGGCTTTCTCATGCTGCTGTGCTTGC TCTTACAGCTGCTCAGTTGAGGGGTCTGCGAATGCTCTCTCTGGTTCTTGGATCTGAAATTACTGATGCATCTGTTGCTG CAATTGCGTCAAGCTATCCAAATCTAGAATTGCTTGATCTCAGTGGATCTGGCATAAGTGACAGCGGAATTGGAATGATT TGCAATGTGTTCCCTGAAACACTTGCCAGACTCCTCCTCGCGCTTTGCCCAAATGTTACTTCAAGTGGCATTCAGTTTGC TACAGCTCAGTTACCGCTCCTTGAACTTATGGACTGTGGCATGACTATATGTGATCCTAATTCCTTAAATTTGCCTGCTG ATGAAAATGACGAATCTCAGAAAACATCCAGCACTAATCTCCACCTCATAAACCAAAAGCTGATCATCAAGCATAGCCGT TTAAAGAAACTCAGTTTGTGGGGTTGTACTTCTTTGGATGGTCTATACTTAAACTGCCCACAACTCAATGATCTCAATCT AAATTCTTGTAGGAATTTGATTCCAGAGAGGCTGCTTCTTCAGTGTCCCACTTTAGAAAATGTGCATGCATCAGGTTGTC AGGATATGTTAGTCGAGGCTATCCAAAGTCAGGTCCGGGATGCATGTTCTTCTATGGAAAACCAATCTCCTTCTAAACGT CTACCTGATGGCTCTAAAAGGGTTCGGGTTCCTTATTCACTTAGCAGTGAGACACCTGAACCTGAAAAAAAGCGTAGGAG GGTGGATAGAAGGCTTTGCAATGTGCTAGTGGATCCCCCTTGA
Protein sequence (LotjaGi5g1v0174900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQRNHIAAAAPPLTTASGDTTTATDAKRGKRRGSYNCGRCGQPKKGHVCNIKTPVAVSDTAATPTDSSLSAISAPSSAAS ALRQPPPSRLCRALSFDDLVDRGAGGVDLVEPDEVADGDSFHEEDLDMDLDIDPCGLPVSLMWEVMRRLPPAGLLAAARV CRGWRETAKRLWKAAEELKLRVPANVQVGFVASMLQKCPGIVRLSLRMESDFDSTMLACIAFSCPNLECMEICIFDTATN RINGDELSRFVADKRSLKSLKMEGCSNLGGFALCSSSLSTLWLSDLHSLSKMVFNCPQLREISLEFSSQDDDGTDLITMI ESLGRSCLKLQNIHIASVRLSHAAVLALTAAQLRGLRMLSLVLGSEITDASVAAIASSYPNLELLDLSGSGISDSGIGMI CNVFPETLARLLLALCPNVTSSGIQFATAQLPLLELMDCGMTICDPNSLNLPADENDESQKTSSTNLHLINQKLIIKHSR LKKLSLWGCTSLDGLYLNCPQLNDLNLNSCRNLIPERLLLQCPTLENVHASGCQDMLVEAIQSQVRDACSSMENQSPSKR LPDGSKRVRVPYSLSSETPEPEKKRRRVDRRLCNVLVDPP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 33 | 33 | - | – | |
Phobius | 1 | 5 | 5 | - | – | |
Phobius | 1 | 18 | 18 | - | – | |
Phobius | 6 | 13 | 8 | - | – | |
Phobius | 14 | 18 | 5 | - | – | |
PANTHER | 19 | 582 | 564 | 1.8E-257 | – | |
PANTHER | 19 | 582 | 564 | 1.8E-257 | – | |
Phobius | 19 | 600 | 582 | - | – | |
Pfam | 136 | 173 | 38 | 7.6E-6 | ||
Gene3D | 136 | 315 | 180 | 2.5E-20 | ||
SUPERFAMILY | 136 | 175 | 40 | 5.76E-8 | ||
SUPERFAMILY | 189 | 422 | 234 | 3.53E-19 | – | |
MobiDBLite | 549 | 588 | 40 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0174900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…