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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0174900 |
| Transcript ID | LotjaGi5g1v0174900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR protein, putative; TAIR: AT3G54650.1 RNI-like superfamily protein; Swiss-Prot: sp|Q8W104|FBL17_ARATH F-box/LRR-repeat protein 17; TrEMBL-Plants: tr|A0A072VKR1|A0A072VKR1_MEDTR F-box/LRR protein, putative; Found in the gene: LotjaGi5g1v0174900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:44647415..44652833) extracted from Lotus japonicus Gifu genome v1.2.
AAACAAGCCTCGTCGAAAACAATACAAAAAGCGCGCCAACTCTCCCGCGCTGTGTCTTATATTTTACTCTCATCATCATC ATCTCACTTTCCTCCATTTCCCTAAACCACACAAAATGCAACGCAATCACATCGCCGCCGCAGCGCCACCACTAACCACC GCAAGCGGCGACACCACCACCGCAACCGACGCTAAGCGCGGGAAAAGACGCGGCAGTTACAACTGCGGCCGATGCGGTCA ACCGAAGAAGGGTCACGTCTGCAACATCAAGACCCCTGTCGCAGTCTCCGACACCGCCGCTACTCCTACCGATTCATCTC TCTCGGCGATTTCCGCGCCGTCCTCGGCTGCTTCCGCGCTCCGTCAGCCGCCGCCGTCGCGGTTATGCCGCGCGCTATCG TTCGACGATCTTGTCGATCGTGGCGCTGGCGGGGTCGATCTGGTGGAGCCGGATGAGGTGGCGGATGGAGATTCGTTTCA CGAGGAGGATCTGGATATGGATCTGGATATTGACCCGTGCGGGTTGCCGGTGAGTCTTATGTGGGAGGTGATGAGGAGGC TGCCTCCGGCGGGGTTGTTGGCGGCGGCGAGGGTGTGTAGAGGTTGGAGGGAGACGGCGAAGAGGCTTTGGAAGGCGGCG GAGGAGCTGAAACTTAGGGTTCCAGCGAATGTGCAAGTCGGATTCGTCGCGTCCATGTTGCAGAAATGTCCAGGGATTGT GAGGCTCTCTCTTCGAATGGAAAGGTGTGTGTGTTGGAATTTTGTTTTGAATCGATCGATGCTTCCAGATCTGCGATTGT GGTTTGAATGAACGAATGAAATTAAGCAAAATCGAAATGTATAACCTAAAATCTGTTAATCGGAACATTGCACTTCAATA TAGTGCTAAAATGCAATGCTAGAGTAGATCGGAAAACATAGGTTGGTTCGTGAAGATCGATGCAGAATCTGAATCTACAT GAAAGGAACAAGAAATAAAGGGATTTTGAAAATGGGATTGTCATCGCATGGTCTATTTGTTACGCTGCACTATTTTTTTT CTGGATTTTTCATTGTGTTGTATGTAAATCTAACTGGTCTGATGTTGCAGTGATTTCGATTCGACGATGCTGGCTTGCAT TGCGTTCTCATGCCCTAATTTGGAATGTATGGAGATCTGTATATTTGATACTGCGACGAATCGGATCAATGGGTAATACT CATGCTCTTATTATTACAATTTTTTTAACCTATTTTTTATTTGTATGGAAATTAAGTTTAGGTTTTGAACATCTGAGCAA TTGAGAATGCAATTAACGCGCGGTAGTAATTTTATACAATGTGAACGTCAGACCTGGAAATTCATTAGATAAAGCCACAG TAAACCAATTGGTTTTGCATAGGATTCAAGAATTTTAGTTGTGTTTGACATTGTTCTATGGGGGTAATTGTGGCTCTTCA GTACTTTTGTCTTGTACGGTCACCCTTCATAGAAATTTTGATTTATGATTTGTGGTCAATCTTCTACATTCTCATCATTC TAGATTCTAGTTGTTTGAGCCCTTCATATGCGGTAGGAGCTTAGATTAGCGTACCGAAGGTTAAACAAAGAATGCTGCTT TTCACTGATTAGCTTTATCTGTTGTTCAACAATGAAAATGCAGGGATGAGTTAAGCCGATTTGTTGCGGATAAAAGAAGC CTCAAAAGCCTCAAGATGGAAGGCTGTTCGAATCTGGGGGGTTTTGCCCTCTGTTCGTCTAGTCTTTCTACACTTTGGCT CTCTGATCTGCACTCTCTTTCTAAGATGGTGATTATTATCTTTTCTTATCTCGAGTGATCGATTTTAAATTGATAATTCC CTCTGAGCATGCATACTGAGTGAACTGTAGTTACTAATAGATGCTTTTAAATGTTAGGTATTTAACTGTCCCCAGTTGAG AGAGATTTCCTTGGAGTTTTCTTCCCAAGATGATGATGGTACTGATCTCATAACAATGATTGAAAGTTTGGGAAGAAGCT GCTTGAAATTGCAAAACATACATATAGCTTCAGTGCGGCTTTCTCATGCTGCTGTGCTTGCTCTTACAGCTGCTCAGTTG AGGTTTGTTATCTTTTGGCATTTTGATCTCTATTTTCCAGTTGTTATACGTATTATCCATTCATCTTGAAATTCCTTCCC TTATTTAAGACTAAAGTTTGTAATGTGTAACGCCTTGAACTTTCTATTAGTATGAGTTCACACTTCTGTGGTGTATGAAC TAAACATGTAGGAGGATGTCCACCTTTATACTGTGGCTGTGTGCTCCACATGGTACATGAGAAATGAAAAGAAACTAGAA AACAAAACTATAACACCTAACATGCATTCATGTAAACAGAAATAATAAGTAGGCAATGACCCAGTCTTAATTCTATTTCG AAATTTGTATGTATATCTAAAATCCATATCCTATAAGTCTATAACTGATTGACAGGTTATATATTGGTCAAAATGCCATT CTTATCTGTTTTTTCCTCCCAAATTTGTACTATAGTGAGGCAGTGTTAATAGCTTTTACAAGCATATCCACATTGTTGGG AAGCATACTGAAAATTTGTTTACAATATTCAGGGGTCTGCGAATGCTCTCTCTGGTTCTTGGATCTGAAATTACTGATGC ATCTGTTGCTGCAATTGCGTCAAGCTATCCAAATCTAGAATTGCTTGATCTCAGTGGGTATGCATTTGTATCCATTCTAA TTGCTAACAAATTTTCTATTGGAGTTCTGAAAGTGTATATACCTTGAAGATGAAAAAAATCTGATAGCAGTCAAGAGACT ATATGTAAATTCAAGAACATATATTTCAAGTATGCGTTTGTGTCTTGAGTTCTACCTCTGTTCTGTATTTTTCTAATGGA TACATTTTTAACAGATCTGGCATAAGTGACAGCGGAATTGGAATGATTTGCAATGTGTTCCCTGAAACACTTGCCAGACT CCTCCTCGCGCTTTGCCCAAATGTTACTTCAAGTAATTACCTGTTGATCAATATCTGATACTGTCGATATTTGCTTAAGT TTCTGCCTACTAATCTTCTGTGACATGTTTCAGGTGGCATTCAGTTTGCTACAGCTCAGTTACCGCTCCTTGAACTTATG GACTGTGGCATGACTATATGTGATCCTAATTCCTTAAATTTGCCTGCTGATGAAAATGACGAATCTCAGAAAACATCCAG CACTAATCTCCACCTCATAAACCAAAAGCTGATCATCAAGCATAGCCGTTTAAAGAAACTCAGTTTGTGGGGTTGTACTT CTTTGGATGTAAGTTCCATTATATTGAAGACATGCATTGCATTTTCTTTCTTAGGCTTCTAATCTTCAATTTCTTCTCTT CAACTATCATGCAGGGTCTATACTTAAACTGCCCACAACTCAATGATCTCAATCTAAATTCTTGTAGGAATTTGATTCCA GGTAGTCATTTCATGTCCCTGTTTTGTAATTAACAGCTGAAAATTTGATGCAACTTATCAGAATTTCCTTGAAAATAGTG AGATTGATTATTTATTAAATTGATTGGTTCAGAGAGGCTGCTTCTTCAGTGTCCCACTTTAGAAAATGTGCATGCATCAG GTTGTCAGGATATGTTAGTCGAGGCTATCCAAAGTCAGGTAACAAGCAGTTGTTCAGATGTTTTCCTCCATTATTAATAA ATTAATGTGCTCTTTGTGACATGAGTTTCATGAATTATTTTTGGATCCAAAGTACTAGATAGCTTGAAGAAATTTGCAGT TCATGAATAAGCATACATACTCTGACCTCTTTGGTTTGATATCCTCTATTCCTCCTATTTCTAATATAAAATATACTTGA TGATTTGCAGGTCCGGGATGCATGTTCTTCTATGGAAAACCAATCTCCTTCTAAACGTCTACCTGATGGCTCTAAAAGGG TTCGGGTTCCTTATTCACTTAGCAGTGAGGTAAAGCTAGAAAGAGATTAACGCCGTAGAGCATATTTTAATGTACCTCTT TTTTGGGGCTTGGGTGGTTAAGTTGAAACAATATTTACTAGTAATCGATCTCCATATCAGGCATACTGTAAGTATGTGCA CCAGTGGTAAAGGAAAAGAAAAATTTGAATTTAGAACTAGCATAGTTTTCTTAACTGGTGTTATATGCATTTTATTGTTA CACATGAAGATGATTTTATTTTGAATTTGAAGTTAACGCGCAATCGTTTTTTGGTTTATTGCAGACACCTGAACCTGAAA AAAAGCGTAGGAGGGTGGATAGAAGGCTTTGCAATGTGCTAGTGGATCCCCCTTGAGACTGATTGTACTGTATACATGTG CAGTATCTCTTGTATGTTTACAATAATCAAAATTCTAGATGTATTATCTATATCCCCTAGCTACCAAACAGGTCATAGTT TTTCAAGCTAGGCTCTCAAACTGTTCATCTTGTCGCCAAGAGATGTTCATGGTTAGCAATGTTGTTATTTGAACTTTGGA TGACTACCTCATTTTTTAATAAAAAATTTATGGGGCCATCGCCTACATAAATGTTCACAGACGTGCTGTGAGCTGTGGGA ATATTTGTCTACGAGAGAAACAATACTTACTCTTCAGTACTACAATAGCACCAAAGTTTTTATCCTCTCCTTGATTTTGG TGTCCAATACTCTAGAAGTTAGTAGGTTACACCATGAGTGAAAATGAACATGTATGGCTGGCCAAGTTGCACATTGAATC CAAATGAACATATATACGTGTCAATACCTATACATTCAATGTTCTGACACTAGCCCGGATTGTTATTGTAACTAACAGTA ACAATTTCCCTTTGCACCCACTACCACTCCTCTTCTTATCTTGATCCTATCCCACCCATTTTTCCTTCATCCAAAACTCT TGAACCTACTAATCCTTTGGAGCCTCAACCTGTACATGATCAACCTACATCTCAATTCTCTCCACCTCTTTCTTCTTTGC CTCTCAACTCTACTGCACCTGTCAGGAGATCTCAGAGAGCACTACAAGCTTCTCAGTATTTGGCTGATTATCATTGGTTC TCTCAAATCGCTCAGCAGTATCTACATCTTCAGAGATCAGGTATCCCTTATGTGGTGTTCTCTTATTCGTCTTTATCTCC ATCACAGAAGTGTTATTCTTTAGCTCCTTCCTTGATCACAGATAAGGATGCAATCTACACTCTTGTTGGAAGGAAGCTAT GATACTGAATTAGCTGTCCTGCATAACACCAAAACTTGCACACTTGAAACTTTGCCTCCACACCATTATCTAGTGGCTTG TAAGTGGGTTTTCACGAAAGAATAAGGCAAAAGGTCTTGATTTCCTTGAAACATGTAGACACGTGGTTAAGATGACCACA ATTCAAGTGTTGCTTGCCTTAGCTGTTGTTAACAATTGGTTCCTCAAGCAAACTGGACG
CDS sequence (LotjaGi5g1v0174900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAACGCAATCACATCGCCGCCGCAGCGCCACCACTAACCACCGCAAGCGGCGACACCACCACCGCAACCGACGCTAA GCGCGGGAAAAGACGCGGCAGTTACAACTGCGGCCGATGCGGTCAACCGAAGAAGGGTCACGTCTGCAACATCAAGACCC CTGTCGCAGTCTCCGACACCGCCGCTACTCCTACCGATTCATCTCTCTCGGCGATTTCCGCGCCGTCCTCGGCTGCTTCC GCGCTCCGTCAGCCGCCGCCGTCGCGGTTATGCCGCGCGCTATCGTTCGACGATCTTGTCGATCGTGGCGCTGGCGGGGT CGATCTGGTGGAGCCGGATGAGGTGGCGGATGGAGATTCGTTTCACGAGGAGGATCTGGATATGGATCTGGATATTGACC CGTGCGGGTTGCCGGTGAGTCTTATGTGGGAGGTGATGAGGAGGCTGCCTCCGGCGGGGTTGTTGGCGGCGGCGAGGGTG TGTAGAGGTTGGAGGGAGACGGCGAAGAGGCTTTGGAAGGCGGCGGAGGAGCTGAAACTTAGGGTTCCAGCGAATGTGCA AGTCGGATTCGTCGCGTCCATGTTGCAGAAATGTCCAGGGATTGTGAGGCTCTCTCTTCGAATGGAAAGTGATTTCGATT CGACGATGCTGGCTTGCATTGCGTTCTCATGCCCTAATTTGGAATGTATGGAGATCTGTATATTTGATACTGCGACGAAT CGGATCAATGGGGATGAGTTAAGCCGATTTGTTGCGGATAAAAGAAGCCTCAAAAGCCTCAAGATGGAAGGCTGTTCGAA TCTGGGGGGTTTTGCCCTCTGTTCGTCTAGTCTTTCTACACTTTGGCTCTCTGATCTGCACTCTCTTTCTAAGATGGTAT TTAACTGTCCCCAGTTGAGAGAGATTTCCTTGGAGTTTTCTTCCCAAGATGATGATGGTACTGATCTCATAACAATGATT GAAAGTTTGGGAAGAAGCTGCTTGAAATTGCAAAACATACATATAGCTTCAGTGCGGCTTTCTCATGCTGCTGTGCTTGC TCTTACAGCTGCTCAGTTGAGGGGTCTGCGAATGCTCTCTCTGGTTCTTGGATCTGAAATTACTGATGCATCTGTTGCTG CAATTGCGTCAAGCTATCCAAATCTAGAATTGCTTGATCTCAGTGGATCTGGCATAAGTGACAGCGGAATTGGAATGATT TGCAATGTGTTCCCTGAAACACTTGCCAGACTCCTCCTCGCGCTTTGCCCAAATGTTACTTCAAGTGGCATTCAGTTTGC TACAGCTCAGTTACCGCTCCTTGAACTTATGGACTGTGGCATGACTATATGTGATCCTAATTCCTTAAATTTGCCTGCTG ATGAAAATGACGAATCTCAGAAAACATCCAGCACTAATCTCCACCTCATAAACCAAAAGCTGATCATCAAGCATAGCCGT TTAAAGAAACTCAGTTTGTGGGGTTGTACTTCTTTGGATGGTCTATACTTAAACTGCCCACAACTCAATGATCTCAATCT AAATTCTTGTAGGAATTTGATTCCAGAGAGGCTGCTTCTTCAGTGTCCCACTTTAGAAAATGTGCATGCATCAGGTTGTC AGGATATGTTAGTCGAGGCTATCCAAAGTCAGGTCCGGGATGCATGTTCTTCTATGGAAAACCAATCTCCTTCTAAACGT CTACCTGATGGCTCTAAAAGGGTTCGGGTTCCTTATTCACTTAGCAGTGAGACACCTGAACCTGAAAAAAAGCGTAGGAG GGTGGATAGAAGGCTTTGCAATGTGCTAGTGGATCCCCCTTGA
Protein sequence (LotjaGi5g1v0174900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQRNHIAAAAPPLTTASGDTTTATDAKRGKRRGSYNCGRCGQPKKGHVCNIKTPVAVSDTAATPTDSSLSAISAPSSAAS ALRQPPPSRLCRALSFDDLVDRGAGGVDLVEPDEVADGDSFHEEDLDMDLDIDPCGLPVSLMWEVMRRLPPAGLLAAARV CRGWRETAKRLWKAAEELKLRVPANVQVGFVASMLQKCPGIVRLSLRMESDFDSTMLACIAFSCPNLECMEICIFDTATN RINGDELSRFVADKRSLKSLKMEGCSNLGGFALCSSSLSTLWLSDLHSLSKMVFNCPQLREISLEFSSQDDDGTDLITMI ESLGRSCLKLQNIHIASVRLSHAAVLALTAAQLRGLRMLSLVLGSEITDASVAAIASSYPNLELLDLSGSGISDSGIGMI CNVFPETLARLLLALCPNVTSSGIQFATAQLPLLELMDCGMTICDPNSLNLPADENDESQKTSSTNLHLINQKLIIKHSR LKKLSLWGCTSLDGLYLNCPQLNDLNLNSCRNLIPERLLLQCPTLENVHASGCQDMLVEAIQSQVRDACSSMENQSPSKR LPDGSKRVRVPYSLSSETPEPEKKRRRVDRRLCNVLVDPP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 33 | 33 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 6 | 13 | 8 | - | – | |
| Phobius | 14 | 18 | 5 | - | – | |
| PANTHER | 19 | 582 | 564 | 1.8E-257 | – | |
| PANTHER | 19 | 582 | 564 | 1.8E-257 | – | |
| Phobius | 19 | 600 | 582 | - | – | |
| Pfam | 136 | 173 | 38 | 7.6E-6 | ||
| Gene3D | 136 | 315 | 180 | 2.5E-20 | ||
| SUPERFAMILY | 136 | 175 | 40 | 5.76E-8 | ||
| SUPERFAMILY | 189 | 422 | 234 | 3.53E-19 | – | |
| MobiDBLite | 549 | 588 | 40 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0174900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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