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LotjaGi5g1v0185100.2

Overview

Field Value
Gene ID LotjaGi5g1v0185100
Transcript ID LotjaGi5g1v0185100.2
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48489|PP1_ORYSJ Serine/threonine-protein phosphatase PP1; TrEMBL-Plants: tr|O65846|O65846_MEDSA Serine/threonine-protein phosphatase; Found in the gene: LotjaGi5g1v0185100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:47145292..47148717) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAACGTGGGGTTCTTGATGGTATCATCAATAGGCTGCTTGATGTAAGAGGCAGACCTGGGAAGCAGGTACAGCTTTC TGAGGCAGAAATCAGGCAGCTTTGTCTTGTCTCTAAGGATGTTTTCATGAAACAACCAAACCTCTTGGAACTTGAAGCAC CAATTAAGATCTGTGGTATGTTTTCATCAACCCCATATTTGTATATCCTAGTCAATTTAATTTTATTGTTTGATCATGTG AGTTTTGTGATGACTTACTGAGTCACCTTTGGGTGTTTACTGTAGCATGTGTTGATTGTAGTGACTGACATATACCTAAA GGCTAAAGCTATACCATAACTCTTTTCATACAAAATAGTTATGATTTAGAGTTGTTTTTAATTATAGGCAGAGGGGAAAT TATTATTATTATTGAACTGGAGATAAAGTTTGCAACATGGGAAGCTTTGGTTTGTTTTTTTGTTGTTGGTAGGATTGTGT ATATCTGACCCTCTCTAAACTCCAGAATTTGTGTTTGTTCGATTTAGAATATTTAGTTTCTGAGATAGGCTTTAGAAGTA TGAGATTTTGATTAGCTTTGTTAAAATTCATTGTATGATCATGTCAAAGTAAAAAAGACCCTTCTCCTTGAAAGGGAAGA AGTCCTGTTAAATTTGTTTGTGTGAATGTTAAATTGTCTCTTCTTATACTATCCTAGGTTTTTTTTGTCATAGAAGCATA GCATATGGTTCATTCAACTTGAGGTTTCCTCAAAACTTTATCTTAGTCTGGGCTCTGGATTATTTACAACATGAGTAAGA CACATTTTAGAAACTTATTGTGAATGGATTTTTATGACACAAAATGATGTATAACACAAAACTTAGTATATGCATCACAT ATTTTAACTTGTAAGCAATGACACATGAATTTGTTCATTGAGCAATTCAAGTTCCTTAATTTACTATGATTGCCAAGCCA CTTCTGTTGGCATATGCTCTATGACACTGTATGATTTACCGAGTCCACAATTTTTTGTTGTCCTGAATGTTTTCATGCAG CTTCAACTGAAAACCTAGTGTAGTATCCGTGATTTATGTGTGTGTGCGGTTTCTTGTTTTTTAAACTTAATTTTTATCTC AATATCTGCTGGTTATATTCATAGAAATCTAAATCTATGGGACTAACAAGTTCATGATAAGACAATTTAAGTTGTAAACA AGGCTGAATCTCTATTTTATCAACATATTACTATGATTTACACTAATGTGACTGTTTGTAAGATTCTTAAAAAAAAAAAA ACTATTGCTGGGGCATAAGTGCCCTGCTTGCAATTTTAGTCATTCTTGTTCTGCTTCCCATTTTCATTTTTGTCTGCTCT TTGGTATAATTTGGGGCAGTTTATTTGTATTTTTAATGATAACTTTTCCAACTTTTCATCTGTTGGCAGGGTTTGCATTG ATAAATACAGTACTGTTGGTAGGATGAGATTTCCATGCTTTATATGTTCAGTAAAGGTTTAAAATGATCAATGAAGAAGT CTAATTGCACCTGCTCCCTTGTCTTTTTTTGCTAGGTTTATTGTTTCTGTATAATAAAAATTTGCCTAGCTTAGATGGCT GTTAAATTACAGTAAAAATTTCTGGAATGCTAAAGTTGTTGTAACAATTCAATGAAATAGTATGCTTTTATATCTTTTAT GAATGAAACTTCTTTTATCATTTTTCTGACATTGTTTACTAGCTTTTCTATATATTTCATGCTTCATTCTTGCTTCAACT TTCTACATTATCTAGCTGAGTTAAAGTTGATTGTGTGTATGAGGTCTCACTAGCTGATGCTATTCCAAGTTCATTTCAAT TGGTCATTGACTTTCATCTGTGTCATCAGTTTCATTCTATTGGGAAATTGTCTTCTGCATTATATGTAATAACAATGAAA CTATCTCATCTGGCAACATATTTGACATCCCTTTGTGCATCACACATTTAAGCTAGAGTTTTACCCTTTCCTACTTTTCA AGCTCATGACAGAGGATTTTCCTAATTTATCTGCTCATATTGTCCTCATAAAGCAGTCAAGAACTTGTGTTTTCTGCAAT ATAATTTAATTGTATAGAAAAAAGAATAACTATGCACCATTATTGTGGTCTATGATAGTGTCTTGTGAATTAAGATTAAA GCTAATGTCCTGTTCCATTTCACTATGTTCCCAGGTGATGTCCATGGTCAATATTCCGACCTTCTGAGACTTTTTGAGTA CGGTGGATTCCCTCCTCGATCCAATTATTTATTTTTAGGTGACTATGTTGATCGCGGGAAGCAAAGTCTGGAGACAATAT GCCTTCTTCTGGCGTATAAAATAAAATATCCTCAGAACTTTTTCCTTCTGAGGGGTAACCATGAATGCGCTTCCATAAAC CGTATCTACGGATTTTATGATGAGTGTAAAAAGAGATTCAATGTCAAGCTCTGGAAACAGTTTACAGATTGTTTCAACTG CTTGCCTGTGGCAGCTCTCATTGATGAAAAGATACTATGTATGCATGGTGGACTCTCTCCCGTATTACACAGTTTAAATC AGATAAAGAGTTTGCCGCGTCCGAGTGAAGTCCCTGAAACTGGTCTGCTATGTGATCTTCTGTGGTCTGACCCTAGTAGT GACATTCAAGGTTGGGGAGAAAATGAACGAGGAGTGTCCTATACTTTTGGTGCTGACAGGGTGAAAGAATTTCTTCAAAA GCATGATCTTGATTTGATTTGCCGAGCACACCAGGTTTCATATCCCTTTTATGTTACGTTTTCATGTGTCATTTTGCAGT CCATAGTGTTTAAGAATGGGCTAGTTGAAGGAAATAAGAGATATGACCCACGTGCTCAATGTCTTAAGGTATTGGTTAAA TATGTGGTGTCTGGGTTCTCTTGGTGCAGGTTCTCCTGCTTTTCAGGCTTCTCTTTCTTCTATCGAAATTCAAAAGTCCT CACCACCAATGTGGTGGCCAGGCGGTGTGTCATAGGGGGAGCATTTGGGATTTTGTCTTCCCTAAGTGGTGGCCCAACAT TTTAAATATGCAATTACAACAGGATTTCGATTGCAGAATGTGCTGATTTTATTTCATGTTGCAGGTTGTGGAAGATGGAT ATGAATTCTTTGCTAACAGACAACTAGTAACAATCTTCTCGGCGCCTAATTACTGTGGGGAATTTGACAATGCTGGTGCC ATGATGAGTGTGAGTGAGACACTTGTTTGCTCTTTTCAAGTATTGAAGCCTCTAGATAAAAGGGCTAAGTCTGTCCTTGG GAGCACAACTACAGTTAAGCCTAGTGCTCTTACAAAACTCAAGGTATTTCGATTTTCTTGAATCCAGAAGTTTTACATGT TTATAATGTTTAAAAAAAAATGTACCTAGAAATGACAAAATCAGCAACTATTGAGGTATTAGTGTG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0185100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAACGTGGGGTTCTTGATGGTATCATCAATAGGCTGCTTGATGTAAGAGGCAGACCTGGGAAGCAGGTACAGCTTTC TGAGGCAGAAATCAGGCAGCTTTGTCTTGTCTCTAAGGATGTTTTCATGAAACAACCAAACCTCTTGGAACTTGAAGCAC CAATTAAGATCTGTGGTGATGTCCATGGTCAATATTCCGACCTTCTGAGACTTTTTGAGTACGGTGGATTCCCTCCTCGA TCCAATTATTTATTTTTAGGTGACTATGTTGATCGCGGGAAGCAAAGTCTGGAGACAATATGCCTTCTTCTGGCGTATAA AATAAAATATCCTCAGAACTTTTTCCTTCTGAGGGGTAACCATGAATGCGCTTCCATAAACCGTATCTACGGATTTTATG ATGAGTGTAAAAAGAGATTCAATGTCAAGCTCTGGAAACAGTTTACAGATTGTTTCAACTGCTTGCCTGTGGCAGCTCTC ATTGATGAAAAGATACTATGTATGCATGGTGGACTCTCTCCCGTATTACACAGTTTAAATCAGATAAAGAGTTTGCCGCG TCCGAGTGAAGTCCCTGAAACTGGTCTGCTATGTGATCTTCTGTGGTCTGACCCTAGTAGTGACATTCAAGGTTGGGGAG AAAATGAACGAGGAGTGTCCTATACTTTTGGTGCTGACAGGGTTGTGGAAGATGGATATGAATTCTTTGCTAACAGACAA CTAGTAACAATCTTCTCGGCGCCTAATTACTGTGGGGAATTTGACAATGCTGGTGCCATGATGAGTGTGAGTGAGACACT TGTTTGCTCTTTTCAAGTATTGAAGCCTCTAGATAAAAGGGCTAAGTCTGTCCTTGGGAGCACAACTACAGTTAAGCCTA GTGCTCTTACAAAACTCAAGCAACTATTGAGGTATTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0185100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MERGVLDGIINRLLDVRGRPGKQVQLSEAEIRQLCLVSKDVFMKQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGFPPR SNYLFLGDYVDRGKQSLETICLLLAYKIKYPQNFFLLRGNHECASINRIYGFYDECKKRFNVKLWKQFTDCFNCLPVAAL IDEKILCMHGGLSPVLHSLNQIKSLPRPSEVPETGLLCDLLWSDPSSDIQGWGENERGVSYTFGADRVVEDGYEFFANRQ LVTIFSAPNYCGEFDNAGAMMSVSETLVCSFQVLKPLDKRAKSVLGSTTTVKPSALTKLKQLLRY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11668
1 296 296 3.7E-181 –
PANTHER
PTHR11668:SF437
1 296 296 3.7E-181 –
Gene3D
G3DSA:3.60.21.10
2 287 286 1.0E-121
IPR029052
CDD
cd07414
5 276 272 0.0 –
Pfam
PF16891
6 52 47 4.8E-21
IPR031675
SUPERFAMILY
SSF56300
19 280 262 1.3E-104 –
SMART
SM00156
26 278 253 1.1E-139
IPR006186
PRINTS
PR00114
54 81 28 2.0E-87
IPR006186
Pfam
PF00149
54 234 181 1.5E-35
IPR004843
PRINTS
PR00114
83 110 28 2.0E-87
IPR006186
PRINTS
PR00114
116 140 25 2.0E-87
IPR006186
ProSitePatterns
PS00125
117 122 6 -
IPR006186
PRINTS
PR00114
150 176 27 2.0E-87
IPR006186
PRINTS
PR00114
179 206 28 2.0E-87
IPR006186
PRINTS
PR00114
218 238 21 2.0E-87
IPR006186
PRINTS
PR00114
240 256 17 2.0E-87
IPR006186

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0185100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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