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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0185800 |
| Transcript ID | LotjaGi5g1v0185800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase II subunit; TAIR: AT4G14660.1 RNA polymerase Rpb7-like, N-terminal domain-containing protein; Swiss-Prot: sp|A6QRA1|NRPE7_ARATH DNA-directed RNA polymerase V subunit 7; TrEMBL-Plants: tr|I3SJ91|I3SJ91_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0185800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:47260649..47261245) extracted from Lotus japonicus Gifu genome v1.2.
ATCATTTTATGCCATGGCAGACGTTATTACCTTGAAGAAGTAGCAAGTTTAACAATGTTTCTCAAAGTCCAACTGTCATG GAATGTCATAATTGCTGCTGAAAATCTGCAACAAGGAAGTTTAATGCTTCAGCGAGCAATCCTCATCCGCCTTCTGGGTG ACTTTGCTGCGAAAAGGGCCACCAAAGATCTGGGTTATTTTACTGCAGTGACTACACTGGATAAAGTAGGAGAAGGAAAA GTCAGACAGCATACTGGGGATGTGCTCTTCCCTGTTGTTTTCAATGGTGTGACCTTCAAGCTTTTCAAGGGGGAGATACT AGAGGGTGTTGTCCACAAGGTTCTGAAGCATGGGGTTTTCTTGAGATGCGGTCCGATTGAGCATGTCTATCTCTCAAATA TGAAGATGGCTGATTACCGCTACTTTCCTGGTGAGAATGCTTACTTCATGAATGAAAAAGCATCCAAGATTGCGAAGGAT GTCACGATCCGCTTTGTAGTGATCGGTACAAAGTGGATGGAGGCAGAAAGGGAGTTTCAAGCCTTGGTCAGTTTGGAAGG CGATTATCTGGGACCAATTGCATCCCCTGATATCTAG
CDS sequence (LotjaGi5g1v0185800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCTCAAAGTCCAACTGTCATGGAATGTCATAATTGCTGCTGAAAATCTGCAACAAGGAAGTTTAATGCTTCAGCG AGCAATCCTCATCCGCCTTCTGGGTGACTTTGCTGCGAAAAGGGCCACCAAAGATCTGGGTTATTTTACTGCAGTGACTA CACTGGATAAAGTAGGAGAAGGAAAAGTCAGACAGCATACTGGGGATGTGCTCTTCCCTGTTGTTTTCAATGGTGTGACC TTCAAGCTTTTCAAGGGGGAGATACTAGAGGGTGTTGTCCACAAGGTTCTGAAGCATGGGGTTTTCTTGAGATGCGGTCC GATTGAGCATGTCTATCTCTCAAATATGAAGATGGCTGATTACCGCTACTTTCCTGGTGAGAATGCTTACTTCATGAATG AAAAAGCATCCAAGATTGCGAAGGATGTCACGATCCGCTTTGTAGTGATCGGTACAAAGTGGATGGAGGCAGAAAGGGAG TTTCAAGCCTTGGTCAGTTTGGAAGGCGATTATCTGGGACCAATTGCATCCCCTGATATCTAG
Protein sequence (LotjaGi5g1v0185800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLKVQLSWNVIIAAENLQQGSLMLQRAILIRLLGDFAAKRATKDLGYFTAVTTLDKVGEGKVRQHTGDVLFPVVFNGVT FKLFKGEILEGVVHKVLKHGVFLRCGPIEHVYLSNMKMADYRYFPGENAYFMNEKASKIAKDVTIRFVVIGTKWMEAERE FQALVSLEGDYLGPIASPDI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 174 | 174 | 3.0E-89 | – | |
| PANTHER | 1 | 174 | 174 | 3.0E-89 | – | |
| SUPERFAMILY | 1 | 81 | 81 | 1.23E-11 | ||
| Gene3D | 1 | 84 | 84 | 8.0E-13 | ||
| Pfam | 22 | 81 | 60 | 6.7E-5 | ||
| SUPERFAMILY | 84 | 174 | 91 | 1.72E-11 | ||
| Gene3D | 85 | 176 | 92 | 2.7E-23 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. |
Expression pattern of LotjaGi5g1v0185800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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