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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0188300 |
| Transcript ID | LotjaGi5g1v0188300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peroxisomal membrane protein PMP22; TAIR: AT4G14305.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein; Swiss-Prot: sp|Q9ZS51|PMP22_ARATH Peroxisomal membrane protein PMP22; TrEMBL-Plants: tr|I3SAV9|I3SAV9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0188300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:47686387..47688028) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTGACATAGTCAACGATGCTCTGAAGAAATATCTCCGCCAGCTTCAGCTTCATCCTCTCAGAACCAAGGTTTGGTC TTCAATCCCCAGATGATATGAGATGATCCCATTTTTCAAGTTTTTGATTTAACCCATTTTTTCTTTTTTCATTTTTGTTT GTCAGAGACTCATTGGGTTTTGAAAGAATCGTTTTTCATTGTTATAGACTAATGGGGTTGTTCAAAAAATTATAACTTGT GGGTTGTTTTTGTTTAGGCATTTACTGCAGCATTTCTAGCTGGTTTTAGTGATGCAGTGGCACAGAAGATGGCTGGGGCC AAAAAGCTTCAGTTGAGAAGGTTGCTTCTTTTCGTGGTATGTCCATTTGATTATGATTCTTCTCAATTTTCAGTTGCATG TACAATCTGGAGTTTATCCATGTCTGGATCAATTTAAATAGACTAAGATTTTGTCATGAAACTTTGTCTTTTCCCCATTG CGTTGACTCTTGATCAAGGAGCAATTTAGAAAAAGATAAAAAATCAAAATTTGTGCTTAATGAGTCACTTTTTCTGAGAA GATGAAGTAGAAACTATAGTTTGTAATGAAATTGTGAAGCACAGTGCAAATTGAAATCTAATTGTTTTGCAGCTCTATGG TTTCGCCTACTCAGGACCCTTTGGACATTTTCTCCACAAATTGATGGATAAAATTTTTAAGGGGAAGACAGGCAATGAGA CTGTTGCTAAGAAGGTATGTTGTTAGCCCGTGTTATTGTTTGTTCTCTGTTCTTTACACTTCTAGAGATGATATTTTGTT TTGTTTTAGCTTCAATAAAATCCTTAGCCTCGGTAATGTTTATTAGAAATACTCTAATCAATGAAATGTTCTATTACTAG GTGATTCTTGAACAGATAACTAGTTCCCCATGGAACAACTTTCTCTTCATGATGTACTATGGCTTGGTTATAGAAGGTAT GCTAATCAAAAGAATTATTCTGTTATTGTATGTTAGACATCATTTAGACACAAGGGTTGTGATTAAGTGAATAAAGAATA ATGTCAGCTTTTGTTGTGAGTCTGGAAATGAAAAACCACAGAGAAACAAATTGTAAGTGAAGGCTTCCTCATCACTAATG TGTAATTTACCCAGAGACATGGAATGATAGATAAAATTGAGCTTCTTAGAAAGCACACTACACATTTCTTTCTGATTTTT ATTCATCAATCCAGGAATAATTAAGTGTTCTAATACATTTTCTGACTAATGGATCATACAAATGGTGTTTACATAGTACA TGCAACTTGCAAATAAAATATACCAGCTAATTCTTCTGCACTGCATAGTAGTAAAGTGTGCAACTGGTTTGCAGGAAGAC CTTGGAGTATGGTCATAAATAAAGTTAAAAAGGACTACCCTTCTGTTCAGTTGACTGCATGGAAGGTATGGCAATGAGAA CAATTTTCTGCTGTTTGGCTGATGGGGCAGTTTGGAAAGTTCGTTTATTTGAGTTGTTTTTAACTTGCAGTTTTGGCCTG TTGTTGGCTGGGTGAACTACCAATATATGCCTATGCAGTTCCGTGTTATATTTCACAGTTTTGTTGCTGCATGCTGGTAA GTTCCTTCGCCTTTCAAGTTTTCATTTATTACTCTCCTATGA
CDS sequence (LotjaGi5g1v0188300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGACATAGTCAACGATGCTCTGAAGAAATATCTCCGCCAGCTTCAGCTTCATCCTCTCAGAACCAAGGCATTTAC TGCAGCATTTCTAGCTGGTTTTAGTGATGCAGTGGCACAGAAGATGGCTGGGGCCAAAAAGCTTCAGTTGAGAAGGTTGC TTCTTTTCGTGCTCTATGGTTTCGCCTACTCAGGACCCTTTGGACATTTTCTCCACAAATTGATGGATAAAATTTTTAAG GGGAAGACAGGCAATGAGACTGTTGCTAAGAAGGTGATTCTTGAACAGATAACTAGTTCCCCATGGAACAACTTTCTCTT CATGATGTACTATGGCTTGGTTATAGAAGGAAGACCTTGGAGTATGGTCATAAATAAAGTTAAAAAGGACTACCCTTCTG TTCAGTTGACTGCATGGAAGTTTTGGCCTGTTGTTGGCTGGGTGAACTACCAATATATGCCTATGCAGTTCCGTGTTATA TTTCACAGTTTTGTTGCTGCATGCTGGTAA
Protein sequence (LotjaGi5g1v0188300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDIVNDALKKYLRQLQLHPLRTKAFTAAFLAGFSDAVAQKMAGAKKLQLRRLLLFVLYGFAYSGPFGHFLHKLMDKIFK GKTGNETVAKKVILEQITSSPWNNFLFMMYYGLVIEGRPWSMVINKVKKDYPSVQLTAWKFWPVVGWVNYQYMPMQFRVI FHSFVAACW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 52 | 52 | - | – | |
| PANTHER | 1 | 169 | 169 | 1.7E-94 | – | |
| PANTHER | 1 | 169 | 169 | 1.7E-94 | ||
| TMHMM | 50 | 72 | 23 | - | – | |
| Phobius | 53 | 72 | 20 | - | – | |
| Phobius | 73 | 169 | 97 | - | – | |
| Pfam | 114 | 169 | 56 | 8.5E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi5g1v0188300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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