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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0191000 |
| Transcript ID | LotjaGi5g1v0191000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB family protein; TAIR: AT3G23250.1 myb domain protein 15; Swiss-Prot: sp|Q9SJX8|MYB14_ARATH Transcription factor MYB14; TrEMBL-Plants: tr|I3SXR4|I3SXR4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0191000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:48375456..48379201) extracted from Lotus japonicus Gifu genome v1.2.
ATTAATAGTTTTCTTTTCCATTGTAGGAGAGAGAGACATAGAGATCCCGTTTCGCGGAACCAGCTAAATAGTTTGAATAT AGAAATATGCTTTTCTTGTCTTGGACCATTCTAGTCATGGCGTGCGGAATATCCAAGGATAAATACCCACCACGGGTCTT TGGAAACGAAGTTGAAGGACAGAGAAAGGAGCTAGCTAGCCACAAGAGTGTAGTAAGTGCCTAGCAAACTTTACTAGTGC ATTCTTCTTCTTCTACCATCCTTTTGTTTTGCCACAAAACAAGACTCCATATAACAAATCAAGATGGTAAGAGCTCCTTG TTGTGAAAAAATGGGACTGAAAAAGGGTCCTTGGGCTGCTGAGGAAGATGAAATCCTCACATCATACATCCAAAAACATG GCCATGGCAACTGGCGTGCCCTTCCAAAGCAAGCAGGTACTTTCAATTTCATCATTCAACACAATATATTTCCAATTTAT GTGACAACTATTTGGTTAAGACTTAAGAATGAGTAAGACAAAATACTATATAAAAGATGTGACTCACAATCTCACATGCT CAATGCTTTAAGCTTTGAACAAAGATGAGTTGCTTGGTTCTTTTGGTATCCTGAAACCTTCTTGAGTTTTCCACTTTGTT TTATATGTTTGGGATGATTTGGTAATGTCATTCTTAGAATTCGCCTCATGTCAAATTCTACTCCAAAAATTAGTTTAGAA ACGAGAGTTGATGTACTGTTTATAGTGACTTAATTATTTTACTATATTTGATATCTCAAATTAATGTGAAACTTTAACGG TTATGATATGTGTATTAATTTTCTTCTGCTTTCTCTGATCAAATTCTCAGGCTTGTTAAGGTGTGGGAAGAGCTGCAGAC TGCGCTGGATTAACTATTTGAGGCCTGATATCAAGAGAGGGAATTTCACAGCCGAAGAGGAGGAATCAATCATTAAGCTG CATGAAATGCTTGGGAACAGGTATTAATCCATTGAAATTGATTGATCTCCTTCCTAGAATACTTAATGGCATTAATTCAT ATTAACTTCACACAAAAAATAAACCTTAACAAGACAAAACATCATGATGCCACCGATCCTGTTCTTGTACTCCCTCCGGT CCTATTTATAAGCATGAAAGAGAAGAAAAACCTTGGTCCTTTTTATAAGAACCAAATGAAAGTTTGAGCTATATTAATTA ATTTTTTCCAATGATGCCCTTATTAATTCTAACTTGTAAAATGTGTCTCATTAATTATTCTCTCTCTTTCCCACTTTCCA ACACTAATAACAAAGGGTAATTTTGGAAGTTTATTTTGATTTAAGACAAATTTAATGCATTTTATCTAGTTTAACTACAT TTCTTAAACTATGTGAATTTTTTTTTTTGTTGCTTATAAATAGAACCGGAGGGAGTATATCACATGTTGCTGTCTGTCCC TGTTTAGTGATCTTAAGTTCAATGTACTGAAATCATAAATGCTTGATTGTGTCATCAATAACAAGAAGATTTGGACTCAT CCTTCATTTTTTCCCTTAGTACTCCAGATAAACAACATTAATTGAAGTGGTGGGAGCCATGGGCATTAATTGACAACATT CAAGAAAATTAAAATGAATAAGAGGTGTTAAGTAATATTTATTCCATAGGGAGACTAGAGTAGATCATTTAATCCCAACA TCATGGCTAACTGGTTTTAATTCTCTCATATTGTTGAAATAAGTTATCACAATCATTTATTGAAATTTATTGAAAAATAA ACAATCTTGAGTGTAATTATATATGAGGTAGTCTAAATGACCTATGAGAAAATTTGGATTAAATAACTCATCATTCAATC ACATTGAAGATAAGTGAGTTAAAATTTCTATATTTTATTTATAAAAAATCATGTTGGTCCATTGAGTTGTGAGTTAGTAA CTCACATAGGAGTCATTTAGACAACCCATTATATATACTTGCAAAATTTTAATAAACTGTGGAGTTCTTCAAATCTCAAT GGTTTATTTCACAATGTTATGATAATCAATTTATAGGAGCAATATACAAAAAGTGATGAAGAAATGATGCGTAAAAATAT GCAAGATACATTTATAATACAAATTGAAATCATTTGCTCTCAATTAATGTCTTCTTCTTTATTTAATGTCTTCTTCTATG TCTCACAGATCAAATTATGTAATTTAATTGGTGAGTTAGAGAATGAAACACCAAATAGAAAAGGAGGATCTTCATCCTCA AATGCATAAGCTAAAAGTCTATAACTAATGATGTATCAAGAAAGAAATAGGAGAGTGGGATTAAAGTTATCATTCTATAA CATCACAACCAATAACTACAAACTAAAAATAAAGGTGAGGCTGCAACTACAACAAGAATCTCTGATTTAGATCTGCCTTG CACAGAACTTTGAATGGCAGTTTATGGCACATGCAGCAATATGTAAAATGTGCAATGAGATTCACTGTCCTTGTAATCTG TAATTTATTAAGATATATAATATCAAAGTTTGTTGTTTTCTAGTCCACTATAAATAAATAAACTAAACGCGAATCTCGTG CAATTATTTCATAAATATATTAGTTAATTAATCAAAATTTTGATCCTTATTTTCAGGTGGTCAGCAATTGCAGCAAAATT ACCAGGAAGAACAGACAATGAAATAAAAAATGTGTGGCACACTCATTTGAAGAAGAAGCTGCCAAAAACAGAACACCAAC AACAACCAAGCTCAAAACCCAAAATTAGAGTCTCTAAATCGAAAATTAAACGCTCTGATTCCAATTCCAGCACCATAACT CAATCATCAGAACCTGTTACTCTTAGTTTCCGTGACATGGAGTCTTCATCAGCATGCACTACAACAACTTCTAGTGATTT TTCATCAGTCACTGTTGGTGATGAGAGCCAAAAAAATGCTAAAAGTGAAGAAGATACAGAGTCTATGGAGACAATGCCTG AAATTGATGAGAGTTTCTGGTCAGAAGCAGCTATGGATGATGAAATTGAAACCCCCTCATTGCCATCTTTGACAGTCTCA AATGAATTACCACTTGAAGAACCATTTAATTATGATGAAACTTTCAAGCAGAGCTATGGCTCTAATTCAAACTTTGATGA TGGCATGGATTTCTGGTATGACATATTCATCAAAACTGAGGATCCAGTAGAACTGCCCGAGTTCTGAATTTGTCACAAGC ATGATCAATGAGGGTATTATTAAATTGGGGAGATCATAGATTAGTTTTAATGACATGGTAACTCGAATTTGACCGTTTGA CAACATTATTATCATGTTTGGATCAACTAATTTATCCTCAGAATCAATTCAACCTCGAGAAGCTACCCACGTAAGCTTCT CCGGCTACTTATATGGAAAAGGGAGTGCAAGTGAAATACTGACTTTTTTTTTCCTTCTTTTATGTATACTGTGCAAATCA GCAAGTCTCTCTAACTTTTTTTGCTTTTCTACAAATTAGTGTTTAGTTAGGTCAGAGTTAATTGATTGTAATACTAATAA ATGATGTACTTTTATGATGAAGTGTTCAAAATTCTCATGCCCTTTGTTGAGCTTTCTTATCAACTTTCAATAATGTTTTC TTTATAGTATGATTGTGTAGGGGTGAACATGGCCGAGTAAATCCAATGAACCCGTCCAACCCAATCCGATCTAATAGAAA AAATGCGGGTTGGATCAGACAATCTGGTTAGTCGGATGGATTTTACTACAAACCAACCAAGTTCGG
CDS sequence (LotjaGi5g1v0191000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAAGAGCTCCTTGTTGTGAAAAAATGGGACTGAAAAAGGGTCCTTGGGCTGCTGAGGAAGATGAAATCCTCACATC ATACATCCAAAAACATGGCCATGGCAACTGGCGTGCCCTTCCAAAGCAAGCAGGCTTGTTAAGGTGTGGGAAGAGCTGCA GACTGCGCTGGATTAACTATTTGAGGCCTGATATCAAGAGAGGGAATTTCACAGCCGAAGAGGAGGAATCAATCATTAAG CTGCATGAAATGCTTGGGAACAGGTGGTCAGCAATTGCAGCAAAATTACCAGGAAGAACAGACAATGAAATAAAAAATGT GTGGCACACTCATTTGAAGAAGAAGCTGCCAAAAACAGAACACCAACAACAACCAAGCTCAAAACCCAAAATTAGAGTCT CTAAATCGAAAATTAAACGCTCTGATTCCAATTCCAGCACCATAACTCAATCATCAGAACCTGTTACTCTTAGTTTCCGT GACATGGAGTCTTCATCAGCATGCACTACAACAACTTCTAGTGATTTTTCATCAGTCACTGTTGGTGATGAGAGCCAAAA AAATGCTAAAAGTGAAGAAGATACAGAGTCTATGGAGACAATGCCTGAAATTGATGAGAGTTTCTGGTCAGAAGCAGCTA TGGATGATGAAATTGAAACCCCCTCATTGCCATCTTTGACAGTCTCAAATGAATTACCACTTGAAGAACCATTTAATTAT GATGAAACTTTCAAGCAGAGCTATGGCTCTAATTCAAACTTTGATGATGGCATGGATTTCTGGTATGACATATTCATCAA AACTGAGGATCCAGTAGAACTGCCCGAGTTCTGA
Protein sequence (LotjaGi5g1v0191000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRAPCCEKMGLKKGPWAAEEDEILTSYIQKHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTAEEEESIIK LHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKKLPKTEHQQQPSSKPKIRVSKSKIKRSDSNSSTITQSSEPVTLSFR DMESSSACTTTTSSDFSSVTVGDESQKNAKSEEDTESMETMPEIDESFWSEAAMDDEIETPSLPSLTVSNELPLEEPFNY DETFKQSYGSNSNFDDGMDFWYDIFIKTEDPVELPEF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 237 | 237 | 8.1E-101 | – | |
| PANTHER | 1 | 237 | 237 | 8.1E-101 | ||
| ProSiteProfiles | 9 | 61 | 53 | 15.65 | ||
| SUPERFAMILY | 10 | 108 | 99 | 1.42E-30 | ||
| Gene3D | 11 | 67 | 57 | 1.2E-19 | – | |
| SMART | 13 | 63 | 51 | 1.0E-12 | ||
| Pfam | 14 | 61 | 48 | 3.2E-13 | ||
| CDD | 16 | 61 | 46 | 1.95392E-9 | ||
| ProSiteProfiles | 62 | 116 | 55 | 25.996 | ||
| SMART | 66 | 114 | 49 | 7.6E-15 | ||
| Pfam | 67 | 112 | 46 | 9.8E-15 | ||
| Gene3D | 68 | 146 | 79 | 5.5E-21 | – | |
| CDD | 69 | 112 | 44 | 1.81319E-10 | ||
| MobiDBLite | 114 | 201 | 88 | - | – | |
| MobiDBLite | 140 | 185 | 46 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0191000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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