Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi5g1v0193800
Transcript ID	LotjaGi5g1v0193800.1
Related isoforms 1	LotjaGi5g1v0193800.2
Lotus japonicus genome version	Gifu v1.2
Description	ADP-ribosylation factor, putative; TAIR: AT3G22950.1 ADP-ribosylation factor C1; Swiss-Prot: sp\|Q55AD9\|ARL5_DICDI ADP-ribosylation factor-like protein 5; TrEMBL-Plants: tr\|I3S7Z4\|I3S7Z4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0193800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:48815746..48821479) extracted from Lotus japonicus Gifu genome v1.2.

GTGATGGCTTACGTGGCTGGCCACTCAGATATCATATCATCCAACACGTCAATTTTATTCCCCAATTTTATACTACCACG CTATTCCTTTCCTTTCCAGAACAACCAAATCAAAATCAAAATTTCCCTTCTCAAATCGGAAATTAGGGTTCCTTCCCACC ATTCCAATTCTCGCAGTCTCTGATCGGAATCAACTGTGCCAGGTACGATCATTTCCCTTCTTCACCCATTTTGCAGATTT TTTCGATTTGCAAACTCTACAGAGATCGATCCAACGCAAGTTAGATTCCTTTTTGGTTGAAAAAAATCAGATTTTTCTGA TTCCCCTTTTGATCCTTATTCAGGTGAAGTTGATTGATAGAGGATGGGGGCATTGATGTCAAGGTTCTGGTTCATGCTAT TCCCTGCAAAGGAGTATAAGATTGTGGTGGTTGGGTTGGACAACGCTGGAAAGACCACCACCCTTTACAAATTGCATCTT GGTGAGGTTGTCACTACCAACCCCACTGTTGGTAGCAACGTTGAAGAGCTTGTCTACAAGAATATACGATTCGAGGTCCA TAACTTATCACTTTACTAATTTGTTTTTATATCTTGATCTTCCTTTATTGTAAGGGTGTAGTGCCATCTTTATTGCTGCA AGCTGTTTGATCCTGTAACTAATTTATCTATCTGCATTCATATTTAATTTATCCAAATGTGATGAAAATTACTGTTCAAT TTTACCATAACATCTTGTTAGGTTTCCATTAAAATGGTGTTTTGAACACACTAGGACTAGACGGTGCTTATCCCTGTACA ATGTTTACTTCCGGTCGTGTGTCTATTTCTAAGAATGTTTGGCTACCCTTGATTTTATATAATATCATGTTTGAAAATAC CTCTACAATTGATTATGTAGCCAAAACCAATTATGGTGAGAAGCTTATGTGAGTAGGCAGAATTGATTTTGATTCAAACA TCTACAGGTCTAGTTGGCATTTGATATTGTCAAATGCTAGGTGTTTCTGTATGAACGTGGCATGATCTCCTTAATGTACC CTTTGCTTTGTATTGGGGGGTAAGAAGTGTTTTCAGGAGAACCCAAGGGTGTCAGATTGATTTACTCAACTTATTCTAGT GATTTTTAGGTTTTGAAGAAAGCTTTGTTTTTTAGGTCAGATTGTCTAATGCTTTGTATTGCTTTGATAAATAAACATGG TCTACCATTAAAAATTGTGGCGCATGCACAGTAAATTTTGGGCTTGTCAGATCAACTTCTAAGTTCACTTTTTAAAGTTC TCAACTCTGGAAACATCAATTGTTTTGACACATTCTATAAAAATCAAAATATAAAGGAGTTAGGGGGTGGAAGTTAACTA TACTTATACCTTTGTAAAACTTTAGGTTTTGAAGAGGGGATGGATTTTTAATGCTTGTTTGTCCCCCACCCCCCCCCCCC CCCCACAAAAAAAATTGGTGTGCCTATTGAGTTGCACAATAAATTTTAGGCTTGTCAAAATCAACTTATAAATTCACATT TTAAACATCATTCCCAAACCCAATTGAACATTTTCTACCTCAAGTTCTAACTCTGGCAACATCAATTTTTTAACACTAAT TTTACCAAAATCAAAATATAAAACAGATAGGCACTTAACCTTTTACAAACTCCTTTCTTTGCTGATTTTTTTTCCTCCTA GTGAAGGGGATTAGTTTTGACTACAATCCATGTACATGTTCTTGGTATATTTCCAAGCTTTCACTCATGTGCAGGATATT ACTCTACTTTGTGATTTATTTCAGGTCTGGGATCTTGGTGGCCAAGAAAGACTCCGGACATCATGGGCAACATATTACCG CGGAACTAATGCTGTAATTGCAGTGATCGACAGCAGCGATAGAGCCAGGATCTCTATTATGAAAGATGAACTTTTCAGGT TGCTGGGGCATGATGAGTTAAAGCAATCTGTCATTCTTGTCTTTGCTAATAAACAAGATATCAAGGATGCTATGACTCCT GCTGAGATCACTGATGCACTATCCCTTCACAGCATCAAGGATCATGATTGGCATATACAAGCATGCTGTGCCCTCTCTGG TGAAGGGCTGTATGATGGTCTTGGATGGATTGCCCAGAAAGTAACTGGCAAAGCAGCAACATGATGTTGGTTTGCTGGAA ACTAAGGATGAGATTCATTTTTCATGTACTGAATTTATATGATGAGTGACAGAGTCAAACCAAACCAAGCTAATTTGTAG ATTGTTACAGTTTCAATTTGTCTAAAGGATCATATTGTTTACCTCTGATATCAGGATTGAAACCACTACAATCCTACCTT ATTCCAAATGCTTTACATGAAATAAATATGCTTTATAATCTAATAGGTGTCGGTGGCATTGGATTAGTGACAAAGTTTGA TTCTCATGAACCACACTTTTGGGGAAATATTTGGTTTTCACCCACCCAGGTCAGATTTGCAAGAGCAAATTATAACACCC AAAAAGAAATATTTTGGACATCTTAAATTATCACCGATTGGAATTATTGTCTAAGCAATTGAGCTGTTTTCTGAAACATA AAAACTGTGTATTTGCTGTAATTGTCATATGCACACGGAAACATATATGAAAATTTGCCAATAACTATTGTTTAAAACTC AATCTTTCTATGCCAAACTGAGCCTGAGGGAAAAAAATAAATGTAGAACTATGACGATTAGCTTTGGTCATCAGAGAATC GAACATCTGCAGCAGCTTTTGGAATCTTGGGGGCCTTCAAACCATTTATCCCATGAAGGACTTACAGGACCAGCAGTTCT GTCAAACCAGAAAAATAGATCTTTAGTTACTAAAACATATAGAAGATAACATGCGGTTACAACATTGATAAGGAAAATTG CATAAGTGATCTTACAATGGTAGTAACGGATCAGGTCTTGCTTCCACATTGCTAATCATTCTGGCAAAAAAAACAGGGTG GGAATTAAAAGTTAAACCAACATTGATTATAAGTTGTGGAATCATTTTGTGCTCGTAAGCTTACTCTTTGCACGATGTGG ATGCTTTCTCCATCTTTTCAAGCTGTTCCAGTTCTTCCTACATTCATTTTGAAGTTAATAAGATTAAAACAAGCAGAAGT TCGAAAGCTAGAATTAAAGAAAAGTCACCCTAAGAGAGGGTAAAGGTCAGTTTCAAAATCACACTGATAGGAACCAGCCA AAGAAAAGATAGAAAAGCATGATATTATTGAAAGTAAACCCCAGTTGTTCGAGAGAACCTGGACTCTCCTAAATATCAAG TTCTTACAGCATTCCCTACATCCTCAAATTCAATAGAGTGCCTACTCATGTTATACATTGAGTAAAGAGTACCTTCTTAG AAGTGATCTAAAATGTGCAACTTTGGTTTCTAATTGATCACTGCATTAAGAATTCGTGATCTCAATCATCACTCGCTTAC TCAAAAGACTTCAGAGATAAATCATATTCCATCTATAATCTGTCCCATAATCTAAAGATTGCTAGGTGAAAAATTGAATC TAAATTATTCCCAAAAACGGAATTAAAACATTTGGGTACTGGATGGCAATAATTGTAGAAAAAGCATCAAAACGGGTAAG TAATAAATTACTGATAAATAAGAACTAGATGCAAACTGTGAAACTTATATAGAAATGAATGGAACAACTATTTCATGAAA TTACTGCACCTAACCAATCTTCAGAAAATAACAAAAAGAAGGTTTCACATACTAAGCCAACTAAGTTAGTTGCAATTATA TCTACAGAGCAGAAGTCTAAGGAATTATTATGAAAGGATAAAACATGCACACACCTTGCCCGTGCCCCAACTTAGTCCCT TAGACAGAAAAATGCTAAGGTTCTTGTCTGTGTGAACATTGAAAGAATGACTCAAATTATCCAACATAAAAAATTAGATG ACATAATCTGTTTTGATAGACATTTATCCATTATAGTGACAACTGACCTGCACTAATTAAGACCCTGAACTTTTAATAAG ACTGTCTAGAAAAAGATTTCAGTCTCTCCCTCACTCTATAGGTAACTCAATATAAGCATTATACAACTATTGAGTTTCCC AAATCCCTCCCTCCAATAAAATTCAAAAGTCAGGGTGCATATTCCATATTGCACAATTTTGACTATATATGGTTTTTCAA ATTCTACTGCCATTTCAAAGGAAGCTGTCACTAGCAAAAATAGTGAATAAATAAGTTGTTAATTTAGAGTCATCTTAAAG AATTATATGCCCCTTAATGCAAAATAAATGGAATTTCTGGCAATTTCCTACTTAACAAAACGTTGAAGTTGTCCGAACTT CAAACTACAAGTCGGATTAGTAACAAGAAAGAAAAGTGAAAAATGAAACATGTGTTTAGTTACGTTATTTATCATCAACG TTCTATTACTGTTATGACAAATTGGCAATACATCTTGACAGATAAATCCACATACTACCAATCATAGTGAGGACTTGCAG TGAGATGGAATGAAACATAATAGAATCAATTCTATAGTGATGACTTGTAGTGAGATAGAATGAAACACAATAGAATCAAG TCCAAACTATTCCACTCTACTTCCCTCCACTCTCTTCCCTTCCCTTCCATCTCATTCCATTCCACTCTCAGCAGTAAGTA TCCAAACAATTAGAGGGTGGATGGTTTCTCACCTGAATTGTTCCTACATCGTTCTAAAGACAAAATTGGCAGCTAAAGCA CATTTTGTTCCCTAAGAATAATTCATAATCCATATTCTGTTGACATAACTGAGTAGAAAAACATAATAATTACCATAAAT ACTCATCAGAGAACAATCTAACCAAAACACCATTTTGGCCCTCCAAAGATACACTTCACATTAATTTAGTCCTCCAAAGA TTTGCAAAATCATGAGAACCAAATTAAGTATATCGGGAGGACTTTGAATAAAACATCTATCTATCCAAGCTTCTAAATCC AGGTGAACATAATAAAACCCCAGCAATCAAATCAACTAAATAAGAAAACAAAATTGAAAAAAAAAAAGTTAGATCTTTTC CAATCCATTTTACATTTTCTCATAATTCATAGAAGAACAAAAAAACATCCCATAAGAAAGAGCAAAAAGGCCAACAAAAG AAACAAACAACACAGTCAAAATAAACAAAAAGAAAAATCATCCCTGCCAAAGAGCAAAACTCCAAAACATTGTTATGAAT TATGATGATAATGATGAAGTGAGTACATACCTCTAAGAACTTGGCTTCTTGTTCTGTCCGTTTCAGTTCAGCATGTACCC TATGCTTCCCTCTAGTATCTGCAGAAGACAGAGAATGAGTCCGGTGGGTCATGGGTTTTGCGGATTCAGGACCACCCGAT TGCATTTTCTGAGTTCAAAGGCTAGCTTTCACACAATTGATGAACTACAAAGCCTATGAAACAAAGATGATTGATTGAGT GTGACTTAGTTTTTCTAGAAAAACAGGGATGACCCAATAGACCAAATCAAGTGTTGACCATTACAGATACAGAAGAAAGG TCTAAAATGAGAAAATTTGGTGAAGACTATGAGAAAAAGGTTCAGGTTTGTTGTGTGTTTGAATTCAACTTTGAAGTGAA GTTGTGGTTTTTGTTTGGAACAAAGGTGGTTTCCTTTTGAGTTTCTCATTTTTTGGGTGTCTTTTTTGTCTTCTTTTCTC AGAATCTGATTTTGTTTCCATTTCTCTCTCTTTCTTTTCAAACTTTGTGACTTT

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0193800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGGCATTGATGTCAAGGTTCTGGTTCATGCTATTCCCTGCAAAGGAGTATAAGATTGTGGTGGTTGGGTTGGACAA CGCTGGAAAGACCACCACCCTTTACAAATTGCATCTTGGTGAGGTTGTCACTACCAACCCCACTGTTGGTAGCAACGTTG AAGAGCTTGTCTACAAGAATATACGATTCGAGGTCTGGGATCTTGGTGGCCAAGAAAGACTCCGGACATCATGGGCAACA TATTACCGCGGAACTAATGCTGTAATTGCAGTGATCGACAGCAGCGATAGAGCCAGGATCTCTATTATGAAAGATGAACT TTTCAGGTTGCTGGGGCATGATGAGTTAAAGCAATCTGTCATTCTTGTCTTTGCTAATAAACAAGATATCAAGGATGCTA TGACTCCTGCTGAGATCACTGATGCACTATCCCTTCACAGCATCAAGGATCATGATTGGCATATACAAGCATGCTGTGCC CTCTCTGGTGAAGGGCTGTATGATGGTCTTGGATGGATTGCCCAGAAAGTAACTGGCAAAGCAGCAACATGA

Download CDS Sequence

Protein sequence (LotjaGi5g1v0193800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGALMSRFWFMLFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVTTNPTVGSNVEELVYKNIRFEVWDLGGQERLRTSWAT YYRGTNAVIAVIDSSDRARISIMKDELFRLLGHDELKQSVILVFANKQDIKDAMTPAEITDALSLHSIKDHDWHIQACCA LSGEGLYDGLGWIAQKVTGKAAT

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SMART	SM00178 View details on SM00178 Search for proteins/transripts with this domain View external data on SM00178	1	177	177	2.0E-19	–
SMART	SM00177 View details on SM00177 Search for proteins/transripts with this domain View external data on SM00177	1	181	181	8.4E-82	–
CDD	cd04153 View details on cd04153 Search for proteins/transripts with this domain View external data on cd04153	3	176	174	7.20152E-119	–
PANTHER	PTHR11711:SF31 View details on PTHR11711:SF31 Search for proteins/transripts with this domain View external data on PTHR11711:SF31	5	176	172	1.1E-90	–
PANTHER	PTHR11711 View details on PTHR11711 Search for proteins/transripts with this domain View external data on PTHR11711	5	176	172	1.1E-90	–
ProSiteProfiles	PS51417 View details on PS51417 Search for proteins/transripts with this domain View external data on PS51417	11	177	167	22.547	–
Pfam	PF00025 View details on PF00025 Search for proteins/transripts with this domain View external data on PF00025	14	176	163	3.8E-66	IPR006689 Show description in modal box View details on IPR006689 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF52540 View details on SSF52540 Search for proteins/transripts with this domain View external data on SSF52540	15	178	164	2.67E-50	IPR027417 Show description in modal box View details on IPR027417 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR00231 View details on TIGR00231 Search for proteins/transripts with this domain View external data on TIGR00231	16	143	128	1.4E-22	IPR005225 Show description in modal box View details on IPR005225 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00175 View details on SM00175 Search for proteins/transripts with this domain View external data on SM00175	18	151	134	0.0094	–
Gene3D	G3DSA:3.40.50.300 View details on G3DSA:3.40.50.300 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.300	18	177	160	1.3E-58	–
PRINTS	PR00328 View details on PR00328 Search for proteins/transripts with this domain View external data on PR00328	19	42	24	8.8E-19	IPR006689 Show description in modal box View details on IPR006689 Search for proteins/transripts with this domain View on EBI InterPro Service
PRINTS	PR00328 View details on PR00328 Search for proteins/transripts with this domain View external data on PR00328	47	71	25	8.8E-19	IPR006689 Show description in modal box View details on IPR006689 Search for proteins/transripts with this domain View on EBI InterPro Service
PRINTS	PR00328 View details on PR00328 Search for proteins/transripts with this domain View external data on PR00328	74	99	26	8.8E-19	IPR006689 Show description in modal box View details on IPR006689 Search for proteins/transripts with this domain View on EBI InterPro Service
PRINTS	PR00328 View details on PR00328 Search for proteins/transripts with this domain View external data on PR00328	119	140	22	8.8E-19	IPR006689 Show description in modal box View details on IPR006689 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005525 View details of GO:0005525 AmiGO InterPro QuickGO	Molecular function	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.	Subterm of View details of GO:0032550 View details of GO:0032561 View details of GO:0035639

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0193800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi5g1v0193800.1