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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0193800 |
Transcript ID | LotjaGi5g1v0193800.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | ADP-ribosylation factor, putative; TAIR: AT3G22950.1 ADP-ribosylation factor C1; Swiss-Prot: sp|Q55AD9|ARL5_DICDI ADP-ribosylation factor-like protein 5; TrEMBL-Plants: tr|I3S7Z4|I3S7Z4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0193800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:48816109..48817889) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGGCATTGATGTCAAGGTTCTGGTTCATGCTATTCCCTGCAAAGGAGTATAAGATTGTGGTGGTTGGGTTGGACAA CGCTGGAAAGACCACCACCCTTTACAAATTGCATCTTGGTGAGGTTGTCACTACCAACCCCACTGTTGGTAGCAACGTTG AAGAGCTTGTCTACAAGAATATACGATTCGAGGTCCATAACTTATCACTTTACTAATTTGTTTTTATATCTTGATCTTCC TTTATTGTAAGGGTGTAGTGCCATCTTTATTGCTGCAAGCTGTTTGATCCTGTAACTAATTTATCTATCTGCATTCATAT TTAATTTATCCAAATGTGATGAAAATTACTGTTCAATTTTACCATAACATCTTGTTAGGTTTCCATTAAAATGGTGTTTT GAACACACTAGGACTAGACGGTGCTTATCCCTGTACAATGTTTACTTCCGGTCGTGTGTCTATTTCTAAGAATGTTTGGC TACCCTTGATTTTATATAATATCATGTTTGAAAATACCTCTACAATTGATTATGTAGCCAAAACCAATTATGGTGAGAAG CTTATGTGAGTAGGCAGAATTGATTTTGATTCAAACATCTACAGGTCTAGTTGGCATTTGATATTGTCAAATGCTAGGTG TTTCTGTATGAACGTGGCATGATCTCCTTAATGTACCCTTTGCTTTGTATTGGGGGGTAAGAAGTGTTTTCAGGAGAACC CAAGGGTGTCAGATTGATTTACTCAACTTATTCTAGTGATTTTTAGGTTTTGAAGAAAGCTTTGTTTTTTAGGTCAGATT GTCTAATGCTTTGTATTGCTTTGATAAATAAACATGGTCTACCATTAAAAATTGTGGCGCATGCACAGTAAATTTTGGGC TTGTCAGATCAACTTCTAAGTTCACTTTTTAAAGTTCTCAACTCTGGAAACATCAATTGTTTTGACACATTCTATAAAAA TCAAAATATAAAGGAGTTAGGGGGTGGAAGTTAACTATACTTATACCTTTGTAAAACTTTAGGTTTTGAAGAGGGGATGG ATTTTTAATGCTTGTTTGTCCCCCACCCCCCCCCCCCCCCCACAAAAAAAATTGGTGTGCCTATTGAGTTGCACAATAAA TTTTAGGCTTGTCAAAATCAACTTATAAATTCACATTTTAAACATCATTCCCAAACCCAATTGAACATTTTCTACCTCAA GTTCTAACTCTGGCAACATCAATTTTTTAACACTAATTTTACCAAAATCAAAATATAAAACAGATAGGCACTTAACCTTT TACAAACTCCTTTCTTTGCTGATTTTTTTTCCTCCTAGTGAAGGGGATTAGTTTTGACTACAATCCATGTACATGTTCTT GGTATATTTCCAAGCTTTCACTCATGTGCAGGATATTACTCTACTTTGTGATTTATTTCAGGTCTGGGATCTTGGTGGCC AAGAAAGACTCCGGACATCATGGGCAACATATTACCGCGGAACTAATGCTGTAATTGCAGTGATCGACAGCAGCGATAGA GCCAGGATCTCTATTATGAAAGATGAACTTTTCAGGTTGCTGGGGCATGATGAGTTAAAGCAATCTGTCATTCTTGTCTT TGCTAATAAACAAGATATCAAGGATGCTATGACTCCTGCTGAGATCACTGATGCACTATCCCTTCACAGCATCAAGGATC ATGATTGGCATATACAAGCATGCTGTGCCCTCTCTGGTGAAGGGCTGTATGATGGTCTTGGATGGATTGCCCAGAAAGTA ACTGGCAAAGCAGCAACATGA
CDS sequence (LotjaGi5g1v0193800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGCATTGATGTCAAGGTTCTGGTTCATGCTATTCCCTGCAAAGGAGTATAAGATTGTGGTGGTTGGGTTGGACAA CGCTGGAAAGACCACCACCCTTTACAAATTGCATCTTGGTGAGGTTGTCACTACCAACCCCACTGTTGGTAGCAACGTTG AAGAGCTTGTCTACAAGAATATACGATTCGAGGTCTGGGATCTTGGTGGCCAAGAAAGACTCCGGACATCATGGGCAACA TATTACCGCGGAACTAATGCTGTAATTGCAGTGATCGACAGCAGCGATAGAGCCAGGATCTCTATTATGAAAGATGAACT TTTCAGGTTGCTGGGGCATGATGAGTTAAAGCAATCTGTCATTCTTGTCTTTGCTAATAAACAAGATATCAAGGATGCTA TGACTCCTGCTGAGATCACTGATGCACTATCCCTTCACAGCATCAAGGATCATGATTGGCATATACAAGCATGCTGTGCC CTCTCTGGTGAAGGGCTGTATGATGGTCTTGGATGGATTGCCCAGAAAGTAACTGGCAAAGCAGCAACATGA
Protein sequence (LotjaGi5g1v0193800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGALMSRFWFMLFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVTTNPTVGSNVEELVYKNIRFEVWDLGGQERLRTSWAT YYRGTNAVIAVIDSSDRARISIMKDELFRLLGHDELKQSVILVFANKQDIKDAMTPAEITDALSLHSIKDHDWHIQACCA LSGEGLYDGLGWIAQKVTGKAAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SMART | 1 | 177 | 177 | 2.0E-19 | – | |
SMART | 1 | 181 | 181 | 8.4E-82 | – | |
CDD | 3 | 176 | 174 | 7.20152E-119 | – | |
PANTHER | 5 | 176 | 172 | 1.1E-90 | – | |
PANTHER | 5 | 176 | 172 | 1.1E-90 | – | |
ProSiteProfiles | 11 | 177 | 167 | 22.547 | – | |
Pfam | 14 | 176 | 163 | 3.8E-66 | ||
SUPERFAMILY | 15 | 178 | 164 | 2.67E-50 | ||
TIGRFAM | 16 | 143 | 128 | 1.4E-22 | ||
SMART | 18 | 151 | 134 | 0.0094 | – | |
Gene3D | 18 | 177 | 160 | 1.3E-58 | – | |
PRINTS | 19 | 42 | 24 | 8.8E-19 | ||
PRINTS | 47 | 71 | 25 | 8.8E-19 | ||
PRINTS | 74 | 99 | 26 | 8.8E-19 | ||
PRINTS | 119 | 140 | 22 | 8.8E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi5g1v0193800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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