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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0198800 |
| Transcript ID | LotjaGi5g1v0198800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT3G05610.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q8GX86|PME21_ARATH Probable pectinesterase/pectinesterase inhibitor 21; TrEMBL-Plants: tr|A0A0B2P0U9|A0A0B2P0U9_GLYSO Pectinesterase; Found in the gene: LotjaGi5g1v0198800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:49629124..49631270) extracted from Lotus japonicus Gifu genome v1.2.
AATTAATTTACAACAGGAGTTTCTTAACTCTCAATATTCAAAATGGCTGGGGGAGATGCAGAGAAGGGGAAAAGATTCGC CATCATTGGTGTGTCAGCCTTGTTATTGGTGGCTATGGTTGTGGCTGTCATAGCTGGCGTGAGCCATGATCATGAGTATG ACAATGATATAGAAGACAACAGGAAGCACATTGCAACAACTTTAAATGCAGTGCAAACCATTTGCCATCCCACTGATTAC AAGGAGGAATGTGAGGAAAGCCTGATAGCAGAGGCAGGAAACACCACTGACCCAAAAGAGCTTATTAAAATTGCATTTGA CATTACAATTAAGAAGATTGGTGACAAACTTGAGGAAACAAATTTGTTACATGAGGTTGAGAATGAGCCTAGAGCCAAGA TGGCACTTGACACATGCAAACAACTCATGAATCTTTCAATTGAGGAGTTAACAAGGTCATTTGATGGAATAAAAGAGTTT GATCTCATGAATTTGGAGAAAATCCTCATGAATGTTAAGGTTTGGCTTAGCAGCGCGGTCACATACCAAGATACATGCTT GGATGGGTTTGAGAACACAACTAGCAATGCTGGTATGAAGATGAGGGACCTATTAACAACAAGCATTCACATGAGTAGCA ATGCCCTTGCTATTGTCTCTGACCTTGCCGATACCGTCTCGGATTTCAATGTCACAAAGTTAACCGGACGTCGCCTCCTC CATCAGGATGATTCTGAGACTCCCTCATGGGTTGATCATGACCATCGCAGACTCTTTGATTCAAAGAAAAATATATTCAA ACACAAGCCTAATGTGACTGTAGCCATTGATGGAAGTGGAGATTTCAAGACCATCAATGAGTCATTGAAGAAAGTTCCTG ACCATAATGAAAATCCTTTTGTGATTTACATCAAGGAGGGTGTTTACCAAGAATATCTTGAAGTTACCAAGCATATGACC CATGTCGTGTTTGTGGGTGATGGTAGCAAAAAGACACGAATTACTGGCAACAAAAACTTCATAGATGGGATTAACACCTA TAGAACCGCCACTGTTGGTATGTCCCTTTCTAATTATATAACTATAACTACTACACTTCTAGCTTGTCAACATTTACTCA AGATTGATAATTTTGAATTAGCATTTTCTTTTAAGCTTAAATGAAATAAAAAATACATTTTTAAAATTGTAAACTAAAGA TAAGAAATTTTTATGTATGAATTGTAAATTAATGAAATATATGTTTTATGCAGCTATTCAAGGAGATCATTTTACTGCCA TCAATATTGGTTTTGAAAACTCTGCTGGACCCCAAAAGCATCAAGCAGTAGCATTGAGGGTTCAATCAGACAAGTCCTTG TTCTACAATTGTTCAATGGATGGTTATCAAGATACACTTTATGCACACACAATGCGTCAATTCTACCGTGATTGTACCAT TTCAGGTACCATTGACTTTGTCTTTGGTAATGGGCTAGCTGTTTTCCAGAACTGCACTTTTGTGGTCCGAAAGCCTATGA AAAACCAGCAGTGCATTGTGACTGCACAAGGCAGGAAAGAAAGGCAACAACCAACAGGAATAATCATCCAAGGGGGTTCC ATTGTGTCTGACCCTGAGTTCTACCCAGTGAGGTTCGACAACAAGGCCTACCTCGCTCGTCCATGGAAGAATTTCTCCAG AACTATTATCATGGACACCTTTATTGATGATTTGATTCAACCTGATGGTTACTTACCATGGCAAGGATTGGATGGACCTT CCGGCATGAACACCTGCTTTTATGCTGAGTACCACAACACTGGCCCTGGTTCAGACAAATCAAAACGTGTGAATTGGGCT GGGATCTGGAACCTCAATTCAGAAGCTGCACATTGGTTCTCTGCATCCAAATTCTTCCATGGAGATGACTGGATTCGGGC TACTGGGATTCCTTACTTCCATGGCATTCCCGACCATCATAGGCATAAGAAGACATTACTTAATTGGTTATAGGAATGAC TTGTGCTCAAGAGAGTCATGCACCAAATTTATTCCTGTGTAATTCAATTCTTTCTCTCATTTTAATTCCATTTATTAATT TTGACATGGGTTATTATATCATTTATGTTCTTGGGAATACAAAGACTTGCAATTGACGATGAAAAGA
CDS sequence (LotjaGi5g1v0198800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGGGGAGATGCAGAGAAGGGGAAAAGATTCGCCATCATTGGTGTGTCAGCCTTGTTATTGGTGGCTATGGTTGT GGCTGTCATAGCTGGCGTGAGCCATGATCATGAGTATGACAATGATATAGAAGACAACAGGAAGCACATTGCAACAACTT TAAATGCAGTGCAAACCATTTGCCATCCCACTGATTACAAGGAGGAATGTGAGGAAAGCCTGATAGCAGAGGCAGGAAAC ACCACTGACCCAAAAGAGCTTATTAAAATTGCATTTGACATTACAATTAAGAAGATTGGTGACAAACTTGAGGAAACAAA TTTGTTACATGAGGTTGAGAATGAGCCTAGAGCCAAGATGGCACTTGACACATGCAAACAACTCATGAATCTTTCAATTG AGGAGTTAACAAGGTCATTTGATGGAATAAAAGAGTTTGATCTCATGAATTTGGAGAAAATCCTCATGAATGTTAAGGTT TGGCTTAGCAGCGCGGTCACATACCAAGATACATGCTTGGATGGGTTTGAGAACACAACTAGCAATGCTGGTATGAAGAT GAGGGACCTATTAACAACAAGCATTCACATGAGTAGCAATGCCCTTGCTATTGTCTCTGACCTTGCCGATACCGTCTCGG ATTTCAATGTCACAAAGTTAACCGGACGTCGCCTCCTCCATCAGGATGATTCTGAGACTCCCTCATGGGTTGATCATGAC CATCGCAGACTCTTTGATTCAAAGAAAAATATATTCAAACACAAGCCTAATGTGACTGTAGCCATTGATGGAAGTGGAGA TTTCAAGACCATCAATGAGTCATTGAAGAAAGTTCCTGACCATAATGAAAATCCTTTTGTGATTTACATCAAGGAGGGTG TTTACCAAGAATATCTTGAAGTTACCAAGCATATGACCCATGTCGTGTTTGTGGGTGATGGTAGCAAAAAGACACGAATT ACTGGCAACAAAAACTTCATAGATGGGATTAACACCTATAGAACCGCCACTGTTGCTATTCAAGGAGATCATTTTACTGC CATCAATATTGGTTTTGAAAACTCTGCTGGACCCCAAAAGCATCAAGCAGTAGCATTGAGGGTTCAATCAGACAAGTCCT TGTTCTACAATTGTTCAATGGATGGTTATCAAGATACACTTTATGCACACACAATGCGTCAATTCTACCGTGATTGTACC ATTTCAGGTACCATTGACTTTGTCTTTGGTAATGGGCTAGCTGTTTTCCAGAACTGCACTTTTGTGGTCCGAAAGCCTAT GAAAAACCAGCAGTGCATTGTGACTGCACAAGGCAGGAAAGAAAGGCAACAACCAACAGGAATAATCATCCAAGGGGGTT CCATTGTGTCTGACCCTGAGTTCTACCCAGTGAGGTTCGACAACAAGGCCTACCTCGCTCGTCCATGGAAGAATTTCTCC AGAACTATTATCATGGACACCTTTATTGATGATTTGATTCAACCTGATGGTTACTTACCATGGCAAGGATTGGATGGACC TTCCGGCATGAACACCTGCTTTTATGCTGAGTACCACAACACTGGCCCTGGTTCAGACAAATCAAAACGTGTGAATTGGG CTGGGATCTGGAACCTCAATTCAGAAGCTGCACATTGGTTCTCTGCATCCAAATTCTTCCATGGAGATGACTGGATTCGG GCTACTGGGATTCCTTACTTCCATGGCATTCCCGACCATCATAGGCATAAGAAGACATTACTTAATTGGTTATAG
Protein sequence (LotjaGi5g1v0198800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGGDAEKGKRFAIIGVSALLLVAMVVAVIAGVSHDHEYDNDIEDNRKHIATTLNAVQTICHPTDYKEECEESLIAEAGN TTDPKELIKIAFDITIKKIGDKLEETNLLHEVENEPRAKMALDTCKQLMNLSIEELTRSFDGIKEFDLMNLEKILMNVKV WLSSAVTYQDTCLDGFENTTSNAGMKMRDLLTTSIHMSSNALAIVSDLADTVSDFNVTKLTGRRLLHQDDSETPSWVDHD HRRLFDSKKNIFKHKPNVTVAIDGSGDFKTINESLKKVPDHNENPFVIYIKEGVYQEYLEVTKHMTHVVFVGDGSKKTRI TGNKNFIDGINTYRTATVAIQGDHFTAINIGFENSAGPQKHQAVALRVQSDKSLFYNCSMDGYQDTLYAHTMRQFYRDCT ISGTIDFVFGNGLAVFQNCTFVVRKPMKNQQCIVTAQGRKERQQPTGIIIQGGSIVSDPEFYPVRFDNKAYLARPWKNFS RTIIMDTFIDDLIQPDGYLPWQGLDGPSGMNTCFYAEYHNTGPGSDKSKRVNWAGIWNLNSEAAHWFSASKFFHGDDWIR ATGIPYFHGIPDHHRHKKTLLNWL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 575 | 575 | 0.0 | – | |
| PANTHER | 1 | 575 | 575 | 0.0 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 33 | 22 | - | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 34 | 584 | 551 | - | – | |
| SMART | 52 | 204 | 153 | 5.3E-34 | ||
| TIGRFAM | 53 | 207 | 155 | 2.6E-24 | ||
| Gene3D | 54 | 210 | 157 | 1.5E-18 | ||
| Pfam | 56 | 204 | 149 | 7.4E-25 | ||
| SUPERFAMILY | 56 | 208 | 153 | 1.31E-30 | ||
| CDD | 59 | 209 | 151 | 6.19072E-43 | – | |
| SUPERFAMILY | 255 | 569 | 315 | 1.26E-102 | ||
| Gene3D | 255 | 572 | 318 | 4.7E-120 | ||
| Pfam | 257 | 556 | 300 | 1.5E-131 | ||
| ProSitePatterns | 282 | 301 | 20 | - | ||
| ProSitePatterns | 401 | 410 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi5g1v0198800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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