Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi5g1v0207500 |
Transcript ID | LotjaGi5g1v0207500.1 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48489|PP1_ORYSJ Serine/threonine-protein phosphatase PP1; TrEMBL-Plants: tr|I3TAF9|I3TAF9_LOTJA Serine/threonine-protein phosphatase; Found in the gene: LotjaGi5g1v0207500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:50927915..50935497) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTTTTTTATCAATCAAACCCTTAGTGCTTGGTGCGCTAATTAACGATATGACAAGAGATTAATCTCACGACCGTGAG ATATATGTGGTGGGAAGATATCTCAATTAACAAAGAAAATGAATTTACTAGGTCAGCAAGGGCAAAGGGATGAACCCTAA TTATAATAATCCTTCCTGCTAGATTACATTACATATTCATTCATTCTAATTATAACCTAACCTAACCTAAAATCAAAACG CTCTTCTCTTCTCTCCTCTTCATGAAGCCGTGAAGAATGTCCGAACCTTCCCCTCTGTAAACCTCAAACAACACCACCTC TCTCTGCTACCAACAGCGACTGCGATTTTCGGTCATCCTCTCCACGAGGCATGTTCTTCTCTCACCTCTCTTCATTTTTC CTTTCATTATCATCATCGTCGTGTTCAAATCCTGTAAACACGTTGACTTTTTTCATCTAATTCTTTTGCGGTGTTGTGTA GAGGGGAAGAGATGGACCAGGCAGTTTTGGATGACATAATCAATCGCCTCCTTGAAGTTCGTGGCCGTCCCGGGAAGCAG GTGCAGCTCTCGGAATCGGAGATCCGCCAGCTCTGTGCCGCTGCCAGAGAGATTTTCTTGCACCAGCCTAATTTGTTGGA GCTTGAAGCACCTATTAAGATTTGCGGTAATTTTTCTCCTTTTTGATGAATTGGGTATGCTAATTTTGTTGCTTTAGTTT TAATCTCTCCTACCCGCGATTAGTTTGTTGCGTGATATCGCGTTTGAGCATTGGATTGGATGATATTTACTAGAATTATG ATGTTTTGCTTGGTTAAAATTGGAGTGGTTTTTGTTTTTTTTTTTGATGTTTGGTTATGATCTGAGTGCTTGTCCTTGTT TCCTAAGTACATGTTTGCCTTCAATTTTACTGCCTAAATGGCATGCCCGTTTTGTTTTTATGTTATATGGTGTATGCATA TTGTCTCAGTAGTGAAGTTTGTTGAAGATAAATTTGACTAAGTTTGTCTAATGGTCCTTCCACTTTCCCTGGTAATTTGT AAATTAAGAAGAATGACTAAAAATCTGATAATCAAAAAAGATGATGTGTTTGTTAGCTGATCTATGATGAGAGTTCGTGT GTGATGTTGCTCAAAGGGGATGAGGCAAAACAGTTTTGCCAGCTGAGGTAAAAGAGTTTTGACTTGTTTTAACTTCAAAT TATCTTTAAAAGAGTTTCTGAAACAAGTTGTATAGTTGGTACTTTGAAAATGCTTTCCATGATATGCAATGCTCGTATTT TCATAGTAACTCGTCTTGTGGTGTCTAGTTCAGATGTTTCAAGTGTACATAAAATGGTATTCTTATTTGCTAAGATGCAA TGAGCCAAAATATGCATTCTCTTGTTCCTATGAGAAACTCGACTTTCAAAAATGATGTATCATAAACCTTTTAGATTTCA CAAGTTACCAACTTTATTATCTCACGGCCAAGAGTAATGTATCTCTCATTTTAAGATTGTCAGATATAAGTCAAACTTTT TGGACACAGAAAATTTGATTTCTTCTGTACAAAAAGATCTGAGACTTTCAGCCCATTTCTTCTTTATGCATCATGTTATT TTTGCCAGTCAAGCCAGGGTTTTTGACGAATGACAGTCTTATTCAGTTATTTTTGAATTCTAAGGGTAACAATTTTAAGG ATATATTCTCCAACAGGGCCTCAGGTCAACACCATTTTTTGTGTGTGTGGAGGTCCTGGAGGACAAAATGAAGCAAGAAA ATTTGTTTGATGAATACCATCTGGCAACGTATGTGACCAGCAATAATAAATGTGTAAAATAAAACTGTTACTGTTGATGT AGAGTTAGGCCTCCCAAATTCTTTTAGTTACTATGTTTCAAATTTCCTTCAATTGGTGTTGCATTTGTCTTCTTTTCCCA TTTTTAGATTTTTATCTACTATTTTTTTTAATGTTTTTAAATCTTTTATTTTATTTACTTTTGGTGCTGACAAGTTGCTA ATTGAGGAGTTTATATTCTTGAAACCAAATAGTAATTCTGGTAGCAGTTATTTGAAATGATAAAACTTTAACCAAGATAT AGAATATTCATGTACAACTAATTATGTAATATCTGGTGATTGACGAGTATATGCTCATGAATTCAAATAATAATTCTTCC AGAACAGTTATTTGAAATAAAAAAAAAAATGTGAGATAGGAGTGAACAATATCAGATGTTGCTTGAATCTGGTGCAGCCT TGTAGAGTCGGGCATCACATTGTTTTTGCACATGATGTTCTTCATTTACACAGTCGATCTACTATAGTCCTTGGTGTTAT ATACCACATTATATTACGCTATATTATTGTTGGCAGAATAGAAAAATATTTTGTTTATGGAATAATTGATTTCTTCATTT TGTTGATCTTTTAGGTGATGTACACGGTCAATATTCTGATCTTCTAAGGCTTTTTGAGTATGGTGGATTGCCTCCTGAGT CCAACTACTTGTTTTTGGGGGATTATGTGGATCGAGGGAAGCAGAGTTTAGAAACAATATGCCTTCTCCTAGCATATAAA GTAAAATATTCTGAGAATTTTTTCCTTTTGCGGGGAAACCATGAATGTGCTTCTATAAACCGTATATATGGATTTTATGA TGAGTGTAAAAGAAGGTTCAATGTAAGGTTGTGGAAGGTATTTACAGATTGCTTTAATTGCCTGCCTGTGGCAGCCCTCA TTGATGAAAAGATTTTGTGTATGCACGGGGGACTTTCTCCCGACTTAAATAACTTGGATCAGATTAGAAATCTTCAGCGG CCAACTGATGTGCCTGATACAGGTTTGCTTTGTGATCTCCTGTGGTCAGATCCAAGCAAAGAAATTCAGGGTTGGGGAAT GAATGACAGGGGAGTTTCATATACATTTGGTGCTGATAAGGTCTCTGAGTTTCTTCAGAAACATGATTTGGATCTTATTT GTCGAGCTCATCAGGTTAAACTCCTGCCTTTGGTTCTGAATGTGTTACTGGGTCTTCTGGGTTGTGTTTTATTCCCATTT CTATGATATGAAATTTACTTCCAAAAGTCCTAATCTGTTTATCAGGATTATTATAATAGATTTATTTATGTGAACTTAGA ATTACTGTGTACCACAAATTTATGCACTGAGGATGAACTTCTCCCTTCAAATGTCATTTATAGCTGTGATGCGCAATTTT GTACATTCGTGTATTTATATCGATGGATAGTATGTATCAATCAGTTGTGCTCTAAAACTTAAATTGGATTACTATGTTTT GAGCAGGTGGTGGAGGATGGATATGAGTTCTTTGCTAATCGACAGCTTGTAACAATATTTTCAGCACCTAATTACTGTGG GGAGTTTGACAATGCTGGTGCAATGATGAGTGTTGATGAGACACTAATGTGCTCTTTTCAAATATTAAAGCCAGCTGATA AAAAAGCTAAGCTCAACTTTGGAAGTACAACCACTACTAAACCAGGAAACTCTCCTGCCGGTGTAAAGGTAGGGATATAG TTTATTTTCTGATACAATGCATACACAAAATCAGGAGGTACATATTTTATTGCATGTGCATGAGATATATGTAGATATTT GTGAATTTTGACCTTCACATTGAATTGGCAATTACATGCATGGTGACTGTTTTTTGGTTTATGGCTGGGATTCGATTTGT TTTGGTGTCATGGAGGATAAATTACAGTAAGTGTATGGTCATGCTTCCTAAAATCCAGTTTATTTATTGCTTTTGCCTTC AAAATGTAATTCTCAGCATAGATGCTTGTTATTAGCATGGAGATTATGTGACTAGCTTTTGAACCAGACCTTTCCTGTTT TCTGGGGTTTTTCTTTCTTCTTTTTTCATGATAAATATTTTTCCGGTGTACTGTTTATTTCGTGATTTTGTGGGATATCC ATTGATTTAACAATTTCTGGTATAATTTAGGATTATTGGAATGATCTGATTTTATGTGATAGTTGATTGGCTGAAAACCA TTTCTAAGGTCTATGAAAGAAAATGTTGAAGATCCACAGGGGACCATAAACCCATAAGTCAGTTACAGAGAATTTCAGAG GCTGTTTAACCGTTTTAAGTAATAACGGCTGATTAGTTAGCTGCTTAAGAATAAATATTTGAAGACAAGAGGAGGGTATC ACTGATATTGGTGTGAATTGTGGAGAGTTATACGTTCGAAGAGCAGGAGTAGAGGTTCAAGACGCTCGAGTTACTGAAGA GCTTTCTTCAGAAACTGGGGGCAAACCATAACATGGGTGGTGGCTTGTGGAATTTCACCCAGGGAGTGGACGCAATGCGA AATGAATCTGAAGGAGAAAGAACAGTGGGGGAATCAGCAGAGTGATGGCATAAACTGAAGATTGCACATTTGATGGAGAA GACAAGGTCGTGGATGGGGGGTCCAAACATAAGAGAGCTACTTTCAGATGAGAGAAGCCACAGAAGGGGAGAAGGTGCAG GCTGCAACGGGGGCTTTACAAGGGCCAGACTCAGCTCCTTCCATTGGTGGAAATCTTGCAGTCCTAAACGTTATTGGGAG TAGTTTCAGGTTGCAGTGATAGAGAGGTTCCAACCCTTGATGTTGCTGAGCCTATTTGTGGCTTTATTTTCATTGAAGCA GGTGGGGTGAGTAGTGGATTATGTGATGAAATTTGAGAAGTATGTGGGCATAGTGAAAGGAGCAAAGGACTTGAAGATCA TTATGGATATCTTCTTAAATGGGTTAAAAGAAGTAGTTGGGGCTGACGTGAAAATGTACGAACCAAAATCCTTTACAGCC ATGGTCAAGAAGGCTCTCATGGTGGAGGGGGAGTAGAATAAAGCTGTGGCCATGGTAGGTCTGTTCAATGGGGTAGGATC TAACAATTCACATAGCTTTTATGGTAGGTCAAGAACAGTTTCAGTAGGGTCAAAAGCGGTGCCCAGGTTAGTGAAAGAGC TATGGTAGGGTCAGCTGTAAGTTTCAGTAAAAATAGAAGTTAAGGTGGACTAGACACAGGAAGAAAGGGGATACAAAAGA CTCAGATGATGAAATCCAGAAGTTTGTGAAAAGGAGAATGTTTTAGAGGTGGGAGAATTTGGGGTCTGATCATTATGCAA AAACAAACAATTCCAAGCATGTTATTGGACGAAGGAGGTGAAGAAATTAAAGGAGCTATGGGCGGAACAAGTGAAGAAGA TACTCTCCAACTCTATGCATAGCATAGTAGGATTCACTACTTGAAGGTCTTGAAAGGTTGGGGCGTGTTAGGTAACAGAT AGGTGACTGTTAGTGGATTGTGGTGCCACCCATAACTTCATAGCATCCAGTCTCACGGAGGATTAGGGCTAAAGGTTACC AATACTCCTGCATACTTTGTGGAGGTGGGGGGCTGTAATAAGGCGAAATGTCAAGGAATTTGTAAGGGAGTCAAGCTGCA ATTGCAATAACAAATTCAATAGGGTTTCTTCCTTTTTAGCCTGGTGGGTCAGATATCAGGTTTTGTGGCTAGTTCAGAAG ATGTAAAGGCCAACTTCGATAATGACAATGAAAGTTAAGGTTGGAAGGGAAGAAGAAACTGTAGATTAGAGGGAACCAGC TCTGTCTAGGTCTGCAGCCTCTGCACAACTGCTACTCTTAAAATAAAGATCTGAAGGTAAAAAAGGGGAGGGTATCACTT GTCTTGGTGGGAATTGTGGGGTTACTGGGTCTCTCAAATGCTTAGCGCATTCTTGGGTCCCTCTTGATCAATAAAACTCC TATCTTTTCTGACTAGTTCTACAAGAAAACAATTGGGGGATCGAATTGAGCAATGGAAAGAGTTACATACATGAAGCTTT TCAAATGAGAACTCTGAAGAATCCAAGCCATTTCGTGAATCAATTGTTTGAAATGCTCTCCCCCATAATTATGGATTTTG TTGCATTTTGATAGAACTCAGAAAATCAGCAGTAGTTTATTGATAGAACCCTAATTCCCAATTGGGGATTAGGGGAAAGA TACATGAGAGAGATGCCAAACGCCCTCTCTAACCCTAGAAAGAGAACCACTTCTCTCTCTAAACCCAATTCCTAACTGAA TACCAAGATACCCCTAACTCTCTAATGTCGGTTATTTATAGGCTACATGCCTCAATAACATTCTAACTAACTCACTAAGT ATAACTAACTAACTAACCCCTAACCTTGAGTTCCTATCACATTCATTTTGTAATATGTGTAGGAGTTTGTGTTAGTTGCA GAGCGCTTAACCAATTTCCTTACCCATCACTTAATCTAGGCTTGTCCATGTTTTCTTTTCTTTTTTTCTTTTTTTTCACA CTATTTAATTTACCAAATATGTTTCTCTAAGTTTGTCCTTCTCGCTGCGTTGCAGTCTTTCCTTGGTGCAAAAGTATGAA GTTAATTTTGGTGAAAAGGTTGCTGCCACAACTGGTCAGCTTGGTCATGACTCTTGAAGATGTAGTAGTTGCAACTTGCA AGATAAGGAAATTTGAGTTCCATTTGCTCTCCTATGATGATATTCTGGAATTGTAAAAACAAAGGGAAACACCATGATGA ACTATGTAGACCATTGTTTTTAATCATTTCGTGATGGACAAACCATAATCTCCTCCATGTTTTCTTTGTACACTAATGTT GTTCTGAGTTGTAAGCTTCTCAAGCAGTAATGCATGCATCTGCATCTGTTGCTGAATCTAATAAAAAATACTCATACGAT TGGTGGCTTATGGCAGTTGTGAAGCTGGTAAAAAAAACCCCAAAGGTTGGTCGAGTCTCCTTGTTAAGTGTTTGATATTC AATTTTGCTTGTGGAAATCCTGTGTTAATCGGGGTCGTATAAACTTAATTCGCATGAGATACAAGTTCTCACCTTTTTGT TGGCTATTGCTTTGCGATAACAACCCTTGGATTCATGTTCTCAAATATCCTGCCCAGCTTGTGTCACAATTTACAACAGC TCTATTGGCCCCCGGATGGGGAAGTCTCAAACTATAAAGGTTGTGCTGAGGTGAATGAATGTGCTTGCACTGAAAATTGG CCAATCTGACTTGCACAGTGCTGAAGACTTGAATTTCCCCTTGAATGTGTGTATACTCGTCCTAAAACTGTGACAGTCCA TCATAACATATGACTTTTTCAGAATTCGAACTTGTGTCATTATTTTTACGAGGATATAGTTTGTTCACCACTAAACTAAC ACCTTATGAGTGAACTGCTAGTAAAATCAGTCATAAAAAATGTATTTGCTCGTTTACTTCTATGTTTGATTGGCTGCAGG CTAGTTATATTTAATTTTGTTTCCTACATCTTTCCAGGATTTGCAAATAAATAAGCTCTAAAAATGGCATAGAGACGAAC AAAATGGTGAGTTCTAATAGAGTGGCAAATATCAGCCCAAATATAATATAAGACACATGATGATTTATTTACTTTTGGGT TCAAACACATGTCAATAGGGATGAATCTCTCAAGTTTGGGCTTAAAAACCCAATAATTTCAACCCCTTCTCAAGAACTGT TGACACTTCCTCAAGAACCGTTGGCAACAAGTGAATAGTCCATTGGACACAACGAGCGATCAG
CDS sequence (LotjaGi5g1v0207500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCAGGCAGTTTTGGATGACATAATCAATCGCCTCCTTGAAGTTCGTGGCCGTCCCGGGAAGCAGGTGCAGCTCTC GGAATCGGAGATCCGCCAGCTCTGTGCCGCTGCCAGAGAGATTTTCTTGCACCAGCCTAATTTGTTGGAGCTTGAAGCAC CTATTAAGATTTGCGGTGATGTACACGGTCAATATTCTGATCTTCTAAGGCTTTTTGAGTATGGTGGATTGCCTCCTGAG TCCAACTACTTGTTTTTGGGGGATTATGTGGATCGAGGGAAGCAGAGTTTAGAAACAATATGCCTTCTCCTAGCATATAA AGTAAAATATTCTGAGAATTTTTTCCTTTTGCGGGGAAACCATGAATGTGCTTCTATAAACCGTATATATGGATTTTATG ATGAGTGTAAAAGAAGGTTCAATGTAAGGTTGTGGAAGGTATTTACAGATTGCTTTAATTGCCTGCCTGTGGCAGCCCTC ATTGATGAAAAGATTTTGTGTATGCACGGGGGACTTTCTCCCGACTTAAATAACTTGGATCAGATTAGAAATCTTCAGCG GCCAACTGATGTGCCTGATACAGGTTTGCTTTGTGATCTCCTGTGGTCAGATCCAAGCAAAGAAATTCAGGGTTGGGGAA TGAATGACAGGGGAGTTTCATATACATTTGGTGCTGATAAGGTCTCTGAGTTTCTTCAGAAACATGATTTGGATCTTATT TGTCGAGCTCATCAGGTGGTGGAGGATGGATATGAGTTCTTTGCTAATCGACAGCTTGTAACAATATTTTCAGCACCTAA TTACTGTGGGGAGTTTGACAATGCTGGTGCAATGATGAGTGTTGATGAGACACTAATGTGCTCTTTTCAAATATTAAAGC CAGCTGATAAAAAAGCTAAGCTCAACTTTGGAAGTACAACCACTACTAAACCAGGAAACTCTCCTGCCGGTGTAAAGTCT TTCCTTGGTGCAAAAGTATGA
Protein sequence (LotjaGi5g1v0207500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDQAVLDDIINRLLEVRGRPGKQVQLSESEIRQLCAAAREIFLHQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPE SNYLFLGDYVDRGKQSLETICLLLAYKVKYSENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKVFTDCFNCLPVAAL IDEKILCMHGGLSPDLNNLDQIRNLQRPTDVPDTGLLCDLLWSDPSKEIQGWGMNDRGVSYTFGADKVSEFLQKHDLDLI CRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKAKLNFGSTTTTKPGNSPAGVKS FLGAKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 320 | 320 | 7.0E-216 | – | |
PANTHER | 1 | 320 | 320 | 7.0E-216 | – | |
Gene3D | 1 | 305 | 305 | 2.2E-138 | ||
CDD | 5 | 294 | 290 | 0.0 | – | |
Pfam | 6 | 52 | 47 | 8.3E-24 | ||
SUPERFAMILY | 17 | 299 | 283 | 8.07E-119 | – | |
SMART | 26 | 296 | 271 | 5.1E-172 | ||
Pfam | 54 | 245 | 192 | 1.2E-40 | ||
PRINTS | 54 | 81 | 28 | 1.3E-96 | ||
PRINTS | 83 | 110 | 28 | 1.3E-96 | ||
PRINTS | 116 | 140 | 25 | 1.3E-96 | ||
ProSitePatterns | 117 | 122 | 6 | - | ||
PRINTS | 150 | 176 | 27 | 1.3E-96 | ||
PRINTS | 179 | 206 | 28 | 1.3E-96 | ||
PRINTS | 236 | 256 | 21 | 1.3E-96 | ||
PRINTS | 258 | 274 | 17 | 1.3E-96 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi5g1v0207500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…