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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0208200 |
| Transcript ID | LotjaGi5g1v0208200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT3G04760.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic; TrEMBL-Plants: tr|A0A1J7H2R8|A0A1J7H2R8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0208200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:50999529..51001862) extracted from Lotus japonicus Gifu genome v1.2.
GTAAGGTCTCTATTCAGTGGTGTTGGATTCACTCCTCCTATGTAGCATGTCCCATAACAGAACCCAACCCCTTATCCACA ACTGAACCAACCATTCACATGTCTTCACTTCACCTTTCTCCCTAGATTTTCCCTGAACACAACACTCTGTCCATGATATT CAAAACCAAACCAACAACAACATCATCATTTTCATCATCATAGATGACAACAGTTTCAACTGAATTCCTGTCAAGGAATC TCCCAATCAGAACCCATTTGAAACATCATCGTCATCATCCAAATCCCAACACACTCATCACTCGCAAAACACAACAGCTT CTCAATGATGGTGGCACCAGCAACAACAACAACAACAACAGAAGATTCAACAACAACAAGGGTCAGGGTCATTATGTCAG TGTTGGTTCATATCAAAAACTGGATCAGGATTACGATTTCCGAGACCCCCATCTCATGAAAGCTCTCAACAGGTCCTGCA AAGCAGGGAAGTACAATGAGTCTCTGTATTTTCTTCAGCACATGGTCAGCAAAGGTTACAAACCTGATGTTATCCTCTGT ACCAAGCTGATCAAGGGGTTCTTCAATTCAAAGAGGATTGACAAGGCGATGAGGGTCATGGAGATTCTGGAAAAGCATGG GGACCCTGATGTTTTTGCTTACAATGCAGTGATAAGTGGGTTCTGCAAGGCTGATAGAATTGATGTTGCTAACCAGGTGC TAGATAGAATGAGGAAGAGAGGGTTTGCTCCTGATGTTGTTACCTATAATATTCTCATTGGGAATCTTTGTGAGAGGAGA AAGCTTGATTTGGCTTCAAAGGTTATGGGTCAGTTGCTGAGGGATAATTGCAAGCCTACTGTGATCACCTACACAATCTT GATAGAAGCAACCATTATAGAAGGTGGGATTGATGATGCCATGAAGCTTTTGGATGAGATGTTCTCAAGAGGGCTTCAAC CTGATTTGTACACTTACCATGTCATTGTAAGGGGCATGTGCAGAGAAGGGGCGGTGGATCGAGCTTTCGACTTTATTAGC AGAATAAGCACAAGGGGTTGCGCCCCGGATGTGATTTCTTATAACATTCTGCTGAGGGGTCTTTTGAATGAAGGCAAATG GGAAGCTGGAGAGAGGTTGATGGCTGATATGTTGGTGAAAGGTTGCGAGCCGAATGTTGTTACCTACAGCATTTTGATCA GCTCGCTCTGTCGCGATGGCCAAATTGATGAGGCGATGAATGTGTTGAAGGTTATGAAGGAGAAGGGGTTGACTCCTGAT GCTTACAGCTATGATCCATTGATTTCTGCATTCTGCAAAGAGGGCAGAGTGGATTTGGCAATAGAGTTGTTGGGTGACAT GATTTCTGATGGTTGTTTGCCTGATATCATCACCTACAACACAATCTTGGCCTCTCTGTGTAAGATTGGGAAAGCTGATG AGGCTCTCAAAATCTTTGAGAAGCTTGGTGAAGTGGGTTGTCCTCCAAATGCAAGTTCATATAATACAATATTTGGTGCA CTGTGGAGTAGTGGTGACAAAATTCGAGCATTGAGGATGATTTTAGAGATGTTGGACAAGGGTATTGATCCTGATGGGAT CACCTATAATTCACTTATATCTTGTTTGTGCAGAGATGGATTGGTGGATGAGGCAGTTGAGTTGTTAGTGGACATGGAAA GTAGCAAGAGTCAACCTTCAGTTATCAGCTACAATATTGTTCTTCTGGGATTGTGCAAGGTGCACAGAATCATTGAAGCC ATTGAGGTGCTAGCTGCCATGGTTGACAAAGGATGTCAGCCAAATGAAACTACATACACTTTGTTGGTTGAAGGGATTGG TTTTGCGGGATGGCGAAACGATGCAATGCAGCTGGCGAATTCCCTTGTTAGCATTAATGCTATTTCTGAAGATTCTTTGA GACGTTTGAACAAGACTTTTCCCTTGCTTGATGTGTACAAAGAGCTAGCTTTATCAGATTGAACTAAATTCCTGGGCAAG AAGCTGATTCTTCCAAGTCTTCTCCATGAGATTTTTGTTCAGCTCAACTTGATGAGTGCTTTGTCAAACTATTACTTCCA AGTTTGAAGTTTAAAGGGCAAATAATATCCAAAGGAAAGTCATTACATCTAACAAAGATTGTTATATGGAGCCTCTGTTT CATTATGTTTACATAGTTTTTGCACTCAATTGTTATCCAATGACTTGCAGAAAAGTTCGCAGAGTCTGAAATTTGTAAAT TGTGTAAATATCACACCTTGAAAAAATCGTTAAGATTTATGCAGTTATTAAGAGAATTTATAAAATAAAGCAAATTCACA AAATATGAAGTGTG
CDS sequence (LotjaGi5g1v0208200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAACAGTTTCAACTGAATTCCTGTCAAGGAATCTCCCAATCAGAACCCATTTGAAACATCATCGTCATCATCCAAA TCCCAACACACTCATCACTCGCAAAACACAACAGCTTCTCAATGATGGTGGCACCAGCAACAACAACAACAACAACAGAA GATTCAACAACAACAAGGGTCAGGGTCATTATGTCAGTGTTGGTTCATATCAAAAACTGGATCAGGATTACGATTTCCGA GACCCCCATCTCATGAAAGCTCTCAACAGGTCCTGCAAAGCAGGGAAGTACAATGAGTCTCTGTATTTTCTTCAGCACAT GGTCAGCAAAGGTTACAAACCTGATGTTATCCTCTGTACCAAGCTGATCAAGGGGTTCTTCAATTCAAAGAGGATTGACA AGGCGATGAGGGTCATGGAGATTCTGGAAAAGCATGGGGACCCTGATGTTTTTGCTTACAATGCAGTGATAAGTGGGTTC TGCAAGGCTGATAGAATTGATGTTGCTAACCAGGTGCTAGATAGAATGAGGAAGAGAGGGTTTGCTCCTGATGTTGTTAC CTATAATATTCTCATTGGGAATCTTTGTGAGAGGAGAAAGCTTGATTTGGCTTCAAAGGTTATGGGTCAGTTGCTGAGGG ATAATTGCAAGCCTACTGTGATCACCTACACAATCTTGATAGAAGCAACCATTATAGAAGGTGGGATTGATGATGCCATG AAGCTTTTGGATGAGATGTTCTCAAGAGGGCTTCAACCTGATTTGTACACTTACCATGTCATTGTAAGGGGCATGTGCAG AGAAGGGGCGGTGGATCGAGCTTTCGACTTTATTAGCAGAATAAGCACAAGGGGTTGCGCCCCGGATGTGATTTCTTATA ACATTCTGCTGAGGGGTCTTTTGAATGAAGGCAAATGGGAAGCTGGAGAGAGGTTGATGGCTGATATGTTGGTGAAAGGT TGCGAGCCGAATGTTGTTACCTACAGCATTTTGATCAGCTCGCTCTGTCGCGATGGCCAAATTGATGAGGCGATGAATGT GTTGAAGGTTATGAAGGAGAAGGGGTTGACTCCTGATGCTTACAGCTATGATCCATTGATTTCTGCATTCTGCAAAGAGG GCAGAGTGGATTTGGCAATAGAGTTGTTGGGTGACATGATTTCTGATGGTTGTTTGCCTGATATCATCACCTACAACACA ATCTTGGCCTCTCTGTGTAAGATTGGGAAAGCTGATGAGGCTCTCAAAATCTTTGAGAAGCTTGGTGAAGTGGGTTGTCC TCCAAATGCAAGTTCATATAATACAATATTTGGTGCACTGTGGAGTAGTGGTGACAAAATTCGAGCATTGAGGATGATTT TAGAGATGTTGGACAAGGGTATTGATCCTGATGGGATCACCTATAATTCACTTATATCTTGTTTGTGCAGAGATGGATTG GTGGATGAGGCAGTTGAGTTGTTAGTGGACATGGAAAGTAGCAAGAGTCAACCTTCAGTTATCAGCTACAATATTGTTCT TCTGGGATTGTGCAAGGTGCACAGAATCATTGAAGCCATTGAGGTGCTAGCTGCCATGGTTGACAAAGGATGTCAGCCAA ATGAAACTACATACACTTTGTTGGTTGAAGGGATTGGTTTTGCGGGATGGCGAAACGATGCAATGCAGCTGGCGAATTCC CTTGTTAGCATTAATGCTATTTCTGAAGATTCTTTGAGACGTTTGAACAAGACTTTTCCCTTGCTTGATGTGTACAAAGA GCTAGCTTTATCAGATTGA
Protein sequence (LotjaGi5g1v0208200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTVSTEFLSRNLPIRTHLKHHRHHPNPNTLITRKTQQLLNDGGTSNNNNNNRRFNNNKGQGHYVSVGSYQKLDQDYDFR DPHLMKALNRSCKAGKYNESLYFLQHMVSKGYKPDVILCTKLIKGFFNSKRIDKAMRVMEILEKHGDPDVFAYNAVISGF CKADRIDVANQVLDRMRKRGFAPDVVTYNILIGNLCERRKLDLASKVMGQLLRDNCKPTVITYTILIEATIIEGGIDDAM KLLDEMFSRGLQPDLYTYHVIVRGMCREGAVDRAFDFISRISTRGCAPDVISYNILLRGLLNEGKWEAGERLMADMLVKG CEPNVVTYSILISSLCRDGQIDEAMNVLKVMKEKGLTPDAYSYDPLISAFCKEGRVDLAIELLGDMISDGCLPDIITYNT ILASLCKIGKADEALKIFEKLGEVGCPPNASSYNTIFGALWSSGDKIRALRMILEMLDKGIDPDGITYNSLISCLCRDGL VDEAVELLVDMESSKSQPSVISYNIVLLGLCKVHRIIEAIEVLAAMVDKGCQPNETTYTLLVEGIGFAGWRNDAMQLANS LVSINAISEDSLRRLNKTFPLLDVYKELALSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 40 | 61 | 22 | - | – | |
| Gene3D | 70 | 212 | 143 | 1.8E-32 | ||
| ProSiteProfiles | 80 | 114 | 35 | 7.267 | ||
| PANTHER | 90 | 227 | 138 | 4.7E-128 | – | |
| PANTHER | 90 | 227 | 138 | 4.7E-128 | – | |
| TIGRFAM | 92 | 116 | 25 | 0.0013 | ||
| ProSiteProfiles | 115 | 145 | 31 | 7.585 | ||
| PANTHER | 148 | 296 | 149 | 4.7E-128 | – | |
| PANTHER | 148 | 296 | 149 | 4.7E-128 | – | |
| Pfam | 148 | 196 | 49 | 3.4E-17 | ||
| ProSiteProfiles | 149 | 183 | 35 | 13.461 | ||
| TIGRFAM | 152 | 185 | 34 | 7.5E-10 | ||
| ProSiteProfiles | 184 | 218 | 35 | 11.049 | ||
| TIGRFAM | 186 | 220 | 35 | 4.1E-6 | ||
| Gene3D | 213 | 280 | 68 | 1.6E-17 | ||
| ProSiteProfiles | 219 | 253 | 35 | 10.753 | ||
| TIGRFAM | 221 | 254 | 34 | 5.1E-4 | ||
| Pfam | 234 | 267 | 34 | 4.5E-8 | ||
| PANTHER | 252 | 429 | 178 | 4.7E-128 | – | |
| PANTHER | 252 | 429 | 178 | 4.7E-128 | – | |
| ProSiteProfiles | 254 | 288 | 35 | 11.246 | ||
| TIGRFAM | 256 | 290 | 35 | 4.3E-5 | ||
| Gene3D | 281 | 351 | 71 | 5.6E-23 | ||
| Pfam | 288 | 337 | 50 | 6.6E-17 | ||
| ProSiteProfiles | 289 | 323 | 35 | 12.134 | ||
| TIGRFAM | 291 | 325 | 35 | 2.3E-8 | ||
| ProSiteProfiles | 324 | 358 | 35 | 13.976 | ||
| TIGRFAM | 326 | 360 | 35 | 7.4E-10 | ||
| Gene3D | 352 | 423 | 72 | 2.8E-22 | ||
| Pfam | 354 | 386 | 33 | 2.0E-10 | ||
| ProSiteProfiles | 359 | 393 | 35 | 12.836 | ||
| TIGRFAM | 361 | 395 | 35 | 2.0E-9 | ||
| Pfam | 393 | 440 | 48 | 4.4E-13 | ||
| ProSiteProfiles | 394 | 428 | 35 | 13.165 | ||
| TIGRFAM | 396 | 430 | 35 | 7.6E-8 | ||
| PANTHER | 413 | 563 | 151 | 4.7E-128 | – | |
| PANTHER | 413 | 563 | 151 | 4.7E-128 | – | |
| Gene3D | 425 | 579 | 155 | 1.6E-32 | ||
| ProSiteProfiles | 429 | 463 | 35 | 9.843 | ||
| Pfam | 463 | 512 | 50 | 1.7E-14 | ||
| ProSiteProfiles | 464 | 498 | 35 | 12.649 | ||
| TIGRFAM | 466 | 499 | 34 | 3.0E-9 | ||
| ProSiteProfiles | 499 | 533 | 35 | 11.235 | ||
| TIGRFAM | 501 | 535 | 35 | 1.2E-6 | ||
| ProSiteProfiles | 534 | 568 | 35 | 6.007 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0208200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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