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LotjaGi5g1v0208800.1

Overview

Field Value
Gene ID LotjaGi5g1v0208800
Transcript ID LotjaGi5g1v0208800.1
Lotus japonicus genome version Gifu v1.2
Description Myb transcription factor; TAIR: AT3G23250.1 myb domain protein 15; Swiss-Prot: sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4; TrEMBL-Plants: tr|A0A151U5G6|A0A151U5G6_CAJCA Myb-related protein Myb4; Found in the gene: LotjaGi5g1v0208800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:51075771..51077401) extracted from Lotus japonicus Gifu genome v1.2.

CATTAATTCTGTTGTGACATGTGAGTTTGTGATCAGATCACCACCACCATATCTTAAATTTCAACTGTGCGTGCTTTGAA GAGAGAAAACATTGAATTGGAAAACCAATTAAAGGAACAGTATCAAGCACTTTTTTGAATACCATGCAGTTTATTTGGAC CCCATATGTCTACATTTTCAGCATCATATACAAGTTCAGAATTTAGAACAGCACACAACAGAGAAGAAGAAGATGGTGAG GACTCCTTGTTGTGAGAAGATGGGATTGAAGAAGGGGCCTTGGACACAAGAAGAAGATCAGATTTTGATTTCTCATATTC AACAACATGGCCATGGAAACTGGCGTGCACTTCCAAAACAAGCTGGTTTGTGCAACTTAAAACTTCTTTTCCAATTGATA TACGTTTAATAAATGCTTTTTGCAGCTTTCTCTTTTTAATTATAAGATTTCCTTATATTATGATTGTTTAGGTTTGTTAA GGTGTGGTAAGAGTTGTAGGCTTCGTTGGATAAATTACTTAAGACCGGATATTAAAAGAGGGAAATTCAGCAATGAAGAA GTAGAGACAATCCTTAAACTGCATGGAATTCTTGGAAACAGGTAGGTACAGAGCATGTTGACACTGTGTCTTGTAACTTG TACTACTCAGAATCAATTCTAAAACCAGAAGCTACTTAAGTTTCTCTGATCAAAATTGATTTTGACATTAAAGTTAATTA TAGAAAGATTTCAAAACATGAACTAAATGACATTTGTATAAACGGTTTATAAAGATACCATATACTAACCTGTAGCATAC AATTTTCAGAGATATATCGTATGATATCATATTCATATGCCTAAGTTGAATATATAAGATATGATCGAGTTTATTGAAGC AAATACATAAATGATGAAATGAATTTTTTAATGAACCCTTAATTAATGTGACAGATGGTCTACTATTGCTGCAAGATTGC CTGGAAGAACTGATAATGAAATAAAGAATTTTTGGCACACTCATTTGAAGAGGAATGAGAGAAGTACTACTATCAATAAT ACCTCCACTTATCCCTTGCAAGAGGCAGAAGCAGATTCTGGTTCAGGGGCTTTATTAGATATGCCACAGGAAGCTACTTC TAGTTCTAGTGTTACTGGGACATTGTTGATTGCAAATGATGGTTCATCTTCATGGAGAAACTCACCTGCTAAAGGTCTAG GATTTCATGGTAATGGTACAGTCTCTTCTGATATTTCAGGAAAAACAATGGGCAGTAATGCTCATAGTGAGATTGGTGAA GAAATGGAATTTTGGTGTAATCTATTCACCAGCAGTCATCACGACAAGGGCATGGAAATATAATACTGATTCCATGATAT ATAGTTAAGATTAATTACATTTTAGTTATCCTGTTATTCTTTAGGTGCAACATGCCAACATTGTATTTGTGTGCAAAATT TAAATTCACTGATTTAAAGTGAAGAAGAATATCAGCTTAAATATAATAAAAGTCGAAAAAAACAAAAACGTTCACGGAGG GACTCGAACCCTCAATCTCCCGCTCCGGAGGCGAGCGCCTTATCCATTAGGCCACGCGAACTTCAATTGAGCTTAAATTC TCATATATCGTATTTGGTTGTTTACAAATCA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0208800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGAGGACTCCTTGTTGTGAGAAGATGGGATTGAAGAAGGGGCCTTGGACACAAGAAGAAGATCAGATTTTGATTTC TCATATTCAACAACATGGCCATGGAAACTGGCGTGCACTTCCAAAACAAGCTGGTTTGTTAAGGTGTGGTAAGAGTTGTA GGCTTCGTTGGATAAATTACTTAAGACCGGATATTAAAAGAGGGAAATTCAGCAATGAAGAAGTAGAGACAATCCTTAAA CTGCATGGAATTCTTGGAAACAGATGGTCTACTATTGCTGCAAGATTGCCTGGAAGAACTGATAATGAAATAAAGAATTT TTGGCACACTCATTTGAAGAGGAATGAGAGAAGTACTACTATCAATAATACCTCCACTTATCCCTTGCAAGAGGCAGAAG CAGATTCTGGTTCAGGGGCTTTATTAGATATGCCACAGGAAGCTACTTCTAGTTCTAGTGTTACTGGGACATTGTTGATT GCAAATGATGGTTCATCTTCATGGAGAAACTCACCTGCTAAAGGTCTAGGATTTCATGGTAATGGTACAGTCTCTTCTGA TATTTCAGGAAAAACAATGGGCAGTAATGCTCATAGTGAGATTGGTGAAGAAATGGAATTTTGGTGTAATCTATTCACCA GCAGTCATCACGACAAGGGCATGGAAATATAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0208800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVRTPCCEKMGLKKGPWTQEEDQILISHIQQHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSNEEVETILK LHGILGNRWSTIAARLPGRTDNEIKNFWHTHLKRNERSTTINNTSTYPLQEAEADSGSGALLDMPQEATSSSSVTGTLLI ANDGSSSWRNSPAKGLGFHGNGTVSSDISGKTMGSNAHSEIGEEMEFWCNLFTSSHHDKGMEI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641:SF1215
1 200 200 5.8E-81 –
PANTHER
PTHR10641
1 200 200 5.8E-81
IPR015495
ProSiteProfiles
PS51294
9 61 53 17.507
IPR017930
SUPERFAMILY
SSF46689
10 108 99 8.24E-30
IPR009057
Gene3D
G3DSA:1.10.10.60
11 67 57 7.0E-21 –
SMART
SM00717
13 63 51 1.2E-14
IPR001005
Pfam
PF00249
14 61 48 4.4E-15
IPR001005
CDD
cd00167
16 61 46 3.0552E-12
IPR001005
ProSiteProfiles
PS51294
62 116 55 25.59
IPR017930
SMART
SM00717
66 114 49 1.9E-15
IPR001005
Pfam
PF00249
67 112 46 2.0E-13
IPR001005
Gene3D
G3DSA:1.10.10.60
68 136 69 2.3E-18 –
CDD
cd00167
69 112 44 4.09085E-11
IPR001005

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0208800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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