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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0212300 |
| Transcript ID | LotjaGi5g1v0212300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pathogenesis-related protein PR-4; TAIR: AT3G04720.1 pathogenesis-related 4; Swiss-Prot: sp|P09761|WIN1_SOLTU Wound-induced protein WIN1; TrEMBL-Plants: tr|A0A072VNL8|A0A072VNL8_MEDTR Chitinase / Hevein / PR-4 / Wheatwin2; Found in the gene: LotjaGi5g1v0212300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51713739..51714850) extracted from Lotus japonicus Gifu genome v1.2.
CATACACAGTCAGCAATTACATTGCTTGCACCTACAATAATGTTCTATTCATATGCCATTACTGCCATGTCAACATCCAT GCACGACACTAATTTTGACGATTCTCATTGTCTTAGGTAGTAGGATTGTATTGATAAGAAAGTAACCCAAATAACCATAC CCGGAATCACCCTACAGTCTTCATATATCTTTCCCTTTGTCTCTTACATTCAAGTTTGGTTAGACACTCTATTTATATGC ACGCCACAGCTTCTACCTTACACACAAAAACAACACAAGATAATAAGACATATAGCTTGAGTTTTAAACAGAGAGAGAAT GAGGATAAGTAGCAGCATCACGCAGAGGAAGTTAAGCATAGTGGCGGTGTGGTGGCTGATAGCAGCAACGTTTGCGAATG GCCAGAGCGCAAACAACGTGATGGCTACATATAATCTGTACAACCCTCAACAGATTGGTTGGAACCTGTTAACAGCGGGT GCCTACTGCGCAACTTGGAATGCTAACAAGCCTCTTGCATGGCGTAAAAAATATGGATGGACTGCTTTCTGTGGACCCGC TGGCGCTCATGGCAGAGATTCTTGCGGCAAATGCTTGAGGGTAAGTACACGTTTTCTTGCTCTCTCTAATAACTGATGGT ATGAATGTTTCTGACTCGATAAAAGAATATTTTTTTGAGAGAGAATATAAATTAATGAAAGTTTGTTTGAGTAGTACTGA TCATGATTAATAGTTTAAAGTTGCTGATTTTTAGGTGAGGAATACTGCAACTGGGGATGAAGCTACGGTGAGAATTGTGG ACCAGTGTGCTAATGGAGGACTGGACTTGGATGTGAATGTGTTCAGGAGGCTGGACTCTAATGGACAGGGCAACCATCAG GGTCACCTTACAGTCAACTACCGCTTTGTCAATTGCGGTGATTGATTAATTCACTCTCTCATTAATCACTTCAGTCTTCA ATTTCGTAATGGCCAGTGGCCACTGCTGCTAAATAAGACCATCAATGTAATAGAATAAAATAAAGAGTAAAGTACACTCA CCCCCCTTAAGGTTTGTTAAAATTACACTCCACCCCATTCTTATCTAAAATCTACATCCCACCCCATTTTAT
CDS sequence (LotjaGi5g1v0212300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGATAAGTAGCAGCATCACGCAGAGGAAGTTAAGCATAGTGGCGGTGTGGTGGCTGATAGCAGCAACGTTTGCGAA TGGCCAGAGCGCAAACAACGTGATGGCTACATATAATCTGTACAACCCTCAACAGATTGGTTGGAACCTGTTAACAGCGG GTGCCTACTGCGCAACTTGGAATGCTAACAAGCCTCTTGCATGGCGTAAAAAATATGGATGGACTGCTTTCTGTGGACCC GCTGGCGCTCATGGCAGAGATTCTTGCGGCAAATGCTTGAGGGTGAGGAATACTGCAACTGGGGATGAAGCTACGGTGAG AATTGTGGACCAGTGTGCTAATGGAGGACTGGACTTGGATGTGAATGTGTTCAGGAGGCTGGACTCTAATGGACAGGGCA ACCATCAGGGTCACCTTACAGTCAACTACCGCTTTGTCAATTGCGGTGATTGA
Protein sequence (LotjaGi5g1v0212300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRISSSITQRKLSIVAVWWLIAATFANGQSANNVMATYNLYNPQQIGWNLLTAGAYCATWNANKPLAWRKKYGWTAFCGP AGAHGRDSCGKCLRVRNTATGDEATVRIVDQCANGGLDLDVNVFRRLDSNGQGNHQGHLTVNYRFVNCGD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 36 | 36 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 10 | 150 | 141 | 1.6E-69 | – | |
| PANTHER | 10 | 150 | 141 | 1.6E-69 | – | |
| TMHMM | 12 | 31 | 20 | - | – | |
| Phobius | 12 | 23 | 12 | - | – | |
| Phobius | 24 | 28 | 5 | - | – | |
| Gene3D | 29 | 150 | 122 | 8.8E-51 | ||
| ProSiteProfiles | 29 | 150 | 122 | 78.515 | ||
| Phobius | 29 | 150 | 122 | - | – | |
| Pfam | 30 | 148 | 119 | 1.7E-56 | ||
| SUPERFAMILY | 30 | 149 | 120 | 7.32E-41 | ||
| TMHMM | 46 | 63 | 18 | - | – | |
| PRINTS | 64 | 82 | 19 | 3.6E-42 | ||
| PRINTS | 83 | 101 | 19 | 3.6E-42 | ||
| ProSitePatterns | 89 | 97 | 9 | - | ||
| PRINTS | 102 | 120 | 19 | 3.6E-42 | ||
| PRINTS | 123 | 147 | 25 | 3.6E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Defense response to bacterium | Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. | ||
| Biological process | Defense response to fungus | Reactions triggered in response to the presence of a fungus that act to protect the cell or organism. |
Expression pattern of LotjaGi5g1v0212300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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