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LotjaGi5g1v0213200.1

Overview

Field Value
Gene ID LotjaGi5g1v0213200
Transcript ID LotjaGi5g1v0213200.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description GDP-mannose 3,5-epimerase; TAIR: AT5G28840.1 GDP-D-mannose 3',5'-epimerase; Swiss-Prot: sp|A3C4S4|GME1_ORYSJ GDP-mannose 3,5-epimerase 1; TrEMBL-Plants: tr|A0A151U593|A0A151U593_CAJCA GDP-mannose 3,5-epimerase; Found in the gene: LotjaGi5g1v0213200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:51854919..51858399) extracted from Lotus japonicus Gifu genome v1.2.

GTGACTAGCCAATTATTGGAAGCAAATAACGGTCATTGGCTCTCCACTTTTCATCCTATATATAGCAAACCAATGCCCCC TCAATCTCAAACAACTTCTCAATATCTTCTCTTCACACGTTATCTTCCACTCTTCTCTTCCCCAATCTCCTTCTTTTCCT TCTGCACAGGTATCTATGTTCCTCAATTCCCTTTTTTGACTCCAACTTCTTTATGTATATTCTGTATCTCGCTTTTTTCT TTCGGTTTTATATCCCAGTTTAGGGTTTAAACCTTGAACTCTCATGGTTTTGTCTTCAAATTCTCATGTAACGACTTTAC TCTGTCTGGTATATACATCCTCTGTTTTTTTTTCTCTGCATGTCATTCTTTTGTTCCACTCTCACCCATTATGCTTGGTA TTACATATTTTTGTATTCTGCTCTGCCTCAATTCGATGATACTCTCCACCCAAACAAAAAATATATATTGTATTTAGATT TTTTTTTCCAACCTACTTACTTCTAATTCTATTTTTTTGCCAACTATAATGATTAATGAGTTATTGTTTATCATATGATT CCATTATTTTAATTGCATTCTAGAATCCCTCATGTGCCCGCATGTGTTTTATGTAATTAAATAGGAATTTTGTTGAATTG TAGCATTTCATATTCTGTGGTGCAACTTCTTGTCCCTTGATTCACAACTGAAGTTTTTGTTTTTGTTTATGGAGTACCTA CCCATGTTTTAAAATTCAATTAAGAAAATTTTCTGGTTACCCTTTTTAATTCATCTCATATGCAGAATGGGAAGTACTGG AAAAACTGACTATGGTGAATACACCTATGAGAACCTTGAGAGGGAGCTTTACTGGCCATCGGAAAAGCTTAAGATTTCCA TCACTGGAGCTGGGGGTTTTATCGCATCGCACATTGCGCGGCGCCTCAAGACTGAGGGGCACTACATTATTGCCTCGGAC TGGAAAAAAAATGAGCACATGAGTGAGGACATGTTTTGTGATGAATTTCATCTTGTTGATCTCAGGGTCATGGATAACTG CCTCAAGGTCACTAAGGGGGTTGATCATGTTTTCAATCTCGCTGCTGATATGGGTGGGATGGGTTTTATTCAGTCCAACC ACTCTGTGATTATGTACAACAACACAATGATTAGTTTCAACATGATTGAGGCTGCCAGGATTAATGGCATTAAGAGGTTA TCCATCTTGTCCATCATTTCAGTTATGTGTTTTTGGAGCAATTACTGAACAAACATCCACAATGTGACCTTAGTTTTACT TATATGATGTACTTTACTCATGCCAAAACCTTTCCTTTTTACAGGTTTTTTTATGCTTCTAGTGCTTGTATCTATCCTGA ATTCAAACAGTTGGAAACTAATGTGAGCTTGAAGGAGGCTGATGCATGGCCAGCTGAGGTTTGTTTGTGACCTTTAAATG TTTAATATTGCTTTTGGTTCTTCATGTTTACATGATGATTGAGATTGATGTGTTTAATTTTATGACTTTGTAGCCACAAG ATGCATATGGACTAGAGAAGCTCGCAACAGAGGAGTTATGCAAGCACTATAACAAAGATTTTGGAATTGAATGTCGCATT GGGAGGTTCCATAACATATATGGCCCTTTTGGAACATGGAAAGGCATGTTTTAAGTTAATTTTTTCTTTTGTAGTTTTGT TAATGAGCAAATTACCAGACAATGTTTTTTTTAGTTTTTGTAGACATTTGGATTTAATAAGTTTGTTGTTTTCTCATACA GGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGAAAGACAATCACTTCTACTGACAGATTTGAGATGTGGGGAGATGG TTTGCAAACGCGATCATTCACCTTCATTGATGAATGTGTTGAAGGTGTTCTTAGGTAGGTCTTGGCTGAATCTTTCCAGG TTTTCTTTGTTTGAATAAAAAAAAGTTATCTTGTGATATTTATGATTGATGATGAAAGCAAAACCAGTAGAGTAAATTTC CATGTTAATCTGTTTTAAGTAGTTGTCAATTTCATTAGTAGGTTTCTTTGCAAAACCCAGTTATTTGAAGTTGTCTTTTT GCAAGAATTTATTAGCTCAGTCAATGCTATTGAATTCAATGACTATGTTGTGTTTGAATATTCGTTGACACATGAAAACG AACGATAGCATGCACTTCAAGTTAAAAAGTGAACGAAACTCTTCTTATGAATTGGGACAAAAGTACACACTATAGGAGGG AATGAGGGATTGCTGCCTTTACATAATTTAGGATTTGCCTTATTTAGTTGGGTTGGGGAAGATGATTCAGTGTTTATCAA GTAATTATGTAGATGTTTTGTCTTTTTCTTCAGTTAATTATTACTTGTGGTAATACTTGAATTTGTCTCCACTTTTGTCT TTAGATTGACTAAATCCGACTTCCGTGAGCCAGTAAATATTGGAAGTGATGAGATGGTCAGCATGAATGAGATGGCTGAG ATTGTTCTCAGCTTTGAGAACAAGAATATTCCTATACATCACATTCCTGGACCAGAGGGTGTTCGTGGTCGTAACTCAGA TAATACACTGATAAAAGAGAAACTTGGCTGGGCTCCAACAATGAAATTGAAGGTAATAATGTAATTAATTGGGTGAAAAT TACCTTCTTAATCCTATTCCATGTTGTTTATGCAAAGTTTAGTATACGATCTGCTGAGTAGTCATTGATCATAGGTACTG CTGTAATAAAACGAATTCTCCCTTTATCTTCTTCAAATTCAGTAATGGAATGTTGAAGTTTCTACTCAACTTCCCAAGTT GACCTTATCCTCTTTGTCTTAATGAACATCCACAAGATTTTGTTTATACTTAGAGCTGTATCTCAATTCTGATATTGTAG GATGGGCTGAGGATTACATATTTCTGGATTAAGGAGCAGCTTGACAAGGAGAAGGCTAAAGGTATTGATTTAGCAGTTTA TGGAACATCCAAGGTGGTGCAAACCCAAGCCCCAGTTCAACTAGGATCACTTCGTGCTGCAGACGGAAAAGAATGAAGGG GTTAGTTCATGGTCTTAGCACTCATCTAAATGTTTCAAGTGAAGGGTTGGATTTTATTATTGCCACTTAAGAGGTCACTG GTTATCGTTATTTAGCTGTCAATGTTTTGTAATGTTGGTGGTTCATGTGTAGAGTGGTAGTTTGGTGCTCCTGTTGTATT TTGGTATAAGCCTTTTTGAGGCACTGGTTTGTGCTTACTGCACTAGAAGTTCCAAATTATGAGTTCAAGTCTGAGATTAA TAAGTATCCAATTGTTTTCTTCCTTGTGAAGTTCAATGTAATTGATAATTCATGGTTAGGCACTTTTGGTGTCATTCTTC CCTTTGTTTTATGTTTAGCTTCTTAATGAAGTAAAGGCTATAAACTCAGCACAATTATTTTGTTGATGGCTACAAGCTTG ACATAAGCATGAATTAAGGGTAAAAAAATTCATAATAGTGG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0213200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAAGTACTGGAAAAACTGACTATGGTGAATACACCTATGAGAACCTTGAGAGGGAGCTTTACTGGCCATCGGAAAA GCTTAAGATTTCCATCACTGGAGCTGGGGGTTTTATCGCATCGCACATTGCGCGGCGCCTCAAGACTGAGGGGCACTACA TTATTGCCTCGGACTGGAAAAAAAATGAGCACATGAGTGAGGACATGTTTTGTGATGAATTTCATCTTGTTGATCTCAGG GTCATGGATAACTGCCTCAAGGTCACTAAGGGGGTTGATCATGTTTTCAATCTCGCTGCTGATATGGGTGGGATGGGTTT TATTCAGTCCAACCACTCTGTGATTATGTACAACAACACAATGATTAGTTTCAACATGATTGAGGCTGCCAGGATTAATG GCATTAAGAGGTTTTTTTATGCTTCTAGTGCTTGTATCTATCCTGAATTCAAACAGTTGGAAACTAATGTGAGCTTGAAG GAGGCTGATGCATGGCCAGCTGAGCCACAAGATGCATATGGACTAGAGAAGCTCGCAACAGAGGAGTTATGCAAGCACTA TAACAAAGATTTTGGAATTGAATGTCGCATTGGGAGGTTCCATAACATATATGGCCCTTTTGGAACATGGAAAGGTGGAA GGGAGAAGGCTCCTGCTGCTTTTTGTCGAAAGACAATCACTTCTACTGACAGATTTGAGATGTGGGGAGATGGTTTGCAA ACGCGATCATTCACCTTCATTGATGAATGTGTTGAAGGTGTTCTTAGATTGACTAAATCCGACTTCCGTGAGCCAGTAAA TATTGGAAGTGATGAGATGGTCAGCATGAATGAGATGGCTGAGATTGTTCTCAGCTTTGAGAACAAGAATATTCCTATAC ATCACATTCCTGGACCAGAGGGTGTTCGTGGTCGTAACTCAGATAATACACTGATAAAAGAGAAACTTGGCTGGGCTCCA ACAATGAAATTGAAGGATGGGCTGAGGATTACATATTTCTGGATTAAGGAGCAGCTTGACAAGGAGAAGGCTAAAGGTAT TGATTTAGCAGTTTATGGAACATCCAAGGTGGTGCAAACCCAAGCCCCAGTTCAACTAGGATCACTTCGTGCTGCAGACG GAAAAGAATGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0213200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGSTGKTDYGEYTYENLERELYWPSEKLKISITGAGGFIASHIARRLKTEGHYIIASDWKKNEHMSEDMFCDEFHLVDLR VMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETNVSLK EADAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKTITSTDRFEMWGDGLQ TRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFENKNIPIHHIPGPEGVRGRNSDNTLIKEKLGWAP TMKLKDGLRITYFWIKEQLDKEKAKGIDLAVYGTSKVVQTQAPVQLGSLRAADGKE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43574
1 360 360 3.1E-248 –
PANTHER
PTHR43574:SF18
1 360 360 3.1E-248 –
SUPERFAMILY
SSF51735
23 342 320 1.61E-76
IPR036291
CDD
cd05273
28 348 321 0.0
IPR033890
Pfam
PF01370
30 269 240 6.8E-45
IPR001509
Gene3D
G3DSA:3.40.50.720
32 321 290 2.7E-117 –
Gene3D
G3DSA:3.90.25.10
102 334 233 2.7E-117 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0047918
Molecular function GDP-mannose 3,5-epimerase activity Catalysis of the reaction: GDP-mannose = GDP-L-galactose.
Subterm of
GO:0050662
Molecular function Coenzyme binding Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed.
Subterm of
GO:0051287
Molecular function NAD binding Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0213200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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