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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0220100 |
| Transcript ID | LotjaGi5g1v0220100.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Short-chain dehydrogenase/reductase family protein; TAIR: AT1G54870.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9FZ42|GRDH1_ARATH Glucose and ribitol dehydrogenase homolog 1; TrEMBL-Plants: tr|I3SYP3|I3SYP3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0220100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52649987..52651983) extracted from Lotus japonicus Gifu genome v1.2.
GAAAGTTACAAAATTCAGATGAACAAGAGCTTTCTCTCCTAGGAGTTGGTCAGATTCAAAGGATAATCAAACAGATGCAC CCAAAACCAACCTCTTGTGTTGGTCTCTCCATACATTGCCCGTTTCTACAGACGGTTCCGCTGCATGCGAACTATACGAC ACGTCAACACCTCCTTCTGCCACATCTCATCACGTGGCACATTCCAATCCTTTATAAACATAAACCTCTTCATCTGCATG TCAATCTCAGATTCTCAGTGTATATGAAGAACTTGTCACCGCGTGGCATATTCAAACCCACGTGTATGTTCACCCGCTCA CTCTGTTCATCCCCAAGATCTTTAACATCCATATCCACATTCTACTTTCCTTCCAAGAAAACCCACTTGAACTTGACAAA AACTCACTTTCCAACTTTTCAGAACCCTCATACAAGTTCCTAAGACCTTGTTTGTAAGAATGGCTTCTGGTGAACAGAAA TTCCCCCCACAAAAACAAGATGCACAGCCTGGGAAGGAACATGTTATGGATCCAGTACCCCAGTTCACTAACCCTGACTA CAAACCATCAAATAAACTTCAAGTATACACATTTTATACATTGTTTTTCTATTGTAATTGTAAACTATAATTTGATAAAA TTGATTCTTTTTTCTTGTTTGATTTGTTTGCTGTGTTGATTTTCAGGGGAAGATAGCAGTGATCACAGGGGGTGACTCTG GGATTGGAAGAGCTGTGTGCAACTTGTTTGCCTTAGAAGGTGCTACTGTGGCCTTCACATATGTGAAGGGGAGTGAGGAC AAGGACGCGAGGGACACACTTGAAATGATCAAGAAGGCCAAAACTGCGGGTGCTAAAGATCCACTGGCCATTCCAGCTGA CTTGGGTTTTGATGAGAACTGCAAGAAAGTGGTGGATGAAGTTGTGAAAGCCTATGGCCAAATTGACATTCTGATCAACA ATGCAGCAGAGCAATATGAGTGTGCATCAGTGGAAGAGATTGATGAGAAAAGGCTTGAGAGGGTGTTCAGAACAAATATC TTCTCCTATTTCTTCATGACAAGGTGAGTAGGATGGACTTTTTTCCTCATTTCTTGGGTAAGCACAAGTATCCTCCATCT GAGGCCACCTAGCTTCAGAAGGTCTTTTTTTTTTTTTTTAATTTACAAGGAGATTTATTATATTTTTCTATGGAGGGCGA AGAAAATGTGTTGATATTATAAATGTGTAATTTAGGCATGCCTTGAAGCACATGAAGGAAGGAAGCAGCATTATCAACAC CACATCAGTGAATGCATACAAGGGAAATGCAAAACTACTGGACTACACATCCACCAAGGGTGCAATTGTGGCATTTACAA GAGGTCTCTCCCTTCAGCTGGTGAGTAAGGGAATAAGGGTTAATGGTGTGGCGCCTGGACCTATCTGGACTCCATTAATA CCAGCATCTTTCAAGGAGGAAGAAACTTCTCAATTTGGTGGGCAGGTGCCGATGAAGAGAGCTGGCCAGCCTATTGAGGT TGCTCCATCCTATGTGTTTCTTGCCTGCAACGCATGCTCTTCTTACATATCTGGACAAGTCCTACACCCTAATGGTAAGA ATCAAATGCTTCTGCACCAGAATCATGATGTGCACATTGACTGTGTCAGTTTACTAACATGGTAACTTGTTTTTTCAGGT GGAAACGTCGTGAATGCTTGAACAGCAGGGTAGTGTGTTGTGTATGGATGTTTGAAGAACTCAGCCACTCTGCATTGTAG AGATGGGACTTGGGAGGAATATGCTTTTGAATATAGAAACCTATGAAAATAATGTGTATTTTATGGCGAAATGTATGTTA AAAGTATAAAACTGTGTATTAAGATCAAAACGCCCCTTGTTACAAGGATATGTTTTCTCCTTCTACTTCAGGCGATTTTG AACCTACTAGTATAGTCAGGGGCGGACCCACGTGCAGTTCAGGGGGTTCAGTTGAACCCCCTGAAAAAAAAAATTCC
CDS sequence (LotjaGi5g1v0220100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCAAGAAGGCCAAAACTGCGGGTGCTAAAGATCCACTGGCCATTCCAGCTGACTTGGGTTTTGATGAGAACTGCAA GAAAGTGGTGGATGAAGTTGTGAAAGCCTATGGCCAAATTGACATTCTGATCAACAATGCAGCAGAGCAATATGAGTGTG CATCAGTGGAAGAGATTGATGAGAAAAGGCTTGAGAGGGTGTTCAGAACAAATATCTTCTCCTATTTCTTCATGACAAGG CATGCCTTGAAGCACATGAAGGAAGGAAGCAGCATTATCAACACCACATCAGTGAATGCATACAAGGGAAATGCAAAACT ACTGGACTACACATCCACCAAGGGTGCAATTGTGGCATTTACAAGAGGTCTCTCCCTTCAGCTGGTGAGTAAGGGAATAA GGGTTAATGGTGTGGCGCCTGGACCTATCTGGACTCCATTAATACCAGCATCTTTCAAGGAGGAAGAAACTTCTCAATTT GGTGGGCAGGTGCCGATGAAGAGAGCTGGCCAGCCTATTGAGGTTGCTCCATCCTATGTGTTTCTTGCCTGCAACGCATG CTCTTCTTACATATCTGGACAAGTCCTACACCCTAATGGTAAGAATCAAATGCTTCTGCACCAGAATCATGATGTGCACA TTGACTGTGTCAGTTTACTAACATGGTAA
Protein sequence (LotjaGi5g1v0220100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIKKAKTAGAKDPLAIPADLGFDENCKKVVDEVVKAYGQIDILINNAAEQYECASVEEIDEKRLERVFRTNIFSYFFMTR HALKHMKEGSSIINTTSVNAYKGNAKLLDYTSTKGAIVAFTRGLSLQLVSKGIRVNGVAPGPIWTPLIPASFKEEETSQF GGQVPMKRAGQPIEVAPSYVFLACNACSSYISGQVLHPNGKNQMLLHQNHDVHIDCVSLLTW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 201 | 201 | 1.2E-121 | – | |
| PANTHER | 1 | 201 | 201 | 1.2E-121 | – | |
| Gene3D | 2 | 201 | 200 | 9.9E-56 | – | |
| Pfam | 8 | 199 | 192 | 2.9E-44 | – | |
| SUPERFAMILY | 11 | 200 | 190 | 1.08E-56 | ||
| PRINTS | 38 | 49 | 12 | 8.7E-9 | ||
| PRINTS | 38 | 49 | 12 | 2.4E-27 | ||
| PRINTS | 84 | 100 | 17 | 2.4E-27 | ||
| PRINTS | 90 | 98 | 9 | 8.7E-9 | ||
| ProSitePatterns | 97 | 125 | 29 | - | ||
| PRINTS | 110 | 129 | 20 | 8.7E-9 | ||
| PRINTS | 110 | 129 | 20 | 2.4E-27 | ||
| PRINTS | 131 | 148 | 18 | 2.4E-27 | ||
| PRINTS | 165 | 185 | 21 | 2.4E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. |
Expression pattern of LotjaGi5g1v0220100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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