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LotjaGi5g1v0222400.3

Overview

Field Value
Gene ID LotjaGi5g1v0222400
Transcript ID LotjaGi5g1v0222400.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Acyl-CoA-binding domain-containing protein 4; TAIR: AT3G05420.2 acyl-CoA binding protein 4; Swiss-Prot: sp|Q9MA55|ACBP4_ARATH Acyl-CoA-binding domain-containing protein 4; TrEMBL-Plants: tr|A0A0B2QFE8|A0A0B2QFE8_GLYSO Acyl-CoA-binding domain-containing protein 4; Found in the gene: LotjaGi5g1v0222400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:52930672..52938740) extracted from Lotus japonicus Gifu genome v1.2.

GCAGCGATGGCGAGAGCAAGTTCTGGTCTGCAATACCCAGAGCGGTTCTACGCCGCGGCCTCATACGCAGGATTCGACGG ATCCGCCTCTCCCACCAAATCCCTCACCTCCAAGTTCGGCAACTCCTCCGCTCTTCTTCTCTACAGCTTGTACCATCAGG TTCCCTTTCGATCCCAATTGCATCTCTCAATTTTCAACATTGCCACCTTAGATCTGGTGTTTTAGGATTGCATGATTGCA AACCATAGTTTTATAGAATTTCTACTACGTGTCTATTAGATCAACTGTAATTCTAATGAAATGCTCATAATTAAGCATAA TTCGCATTCAAATTTTCAACAATGAGGATTGGAATGTTGATTTGCTGTGTTGATGATCGATCCCAGCTTCAATTTCAGCT TCCGCGTGTCGAAATCGATTTTTGTTGCATTGTCAGATGTGTTGAAGAAATGATTTATCTAGGGGATCAATCACATATAC ATTTAATGCTTAGTTTTTTTATGGCAGGCTAGTATAGGACCTTGTAACATCCCAGAACCCAGTTCATGGAAACTTGTGGA GCATAGCAAATGGGCCAGGTTTGTATGCTTTCAACATTCCCTTTGCTTTCTCGTTGCGGTTTATATACAGTCTCCCGGAT TCGTTCGCTCTATTTATGCATGCATTTGGCGTGATTCTGATTTTACTTTGCTTCTTCATTATGTATATTTTATGCAAACA TTTTTTTAGTCAATGTAGTTTTTGCAATTTACACTATTGCATCCCTGCTTTCATTTGTTGAGGATATTATTGAAAAGTAG TTGTTGTTGATGCAGCTGGAACCAGCTCGGAAACATGTCCTCCACAGAAGCCATGCGTCTTTTTGTGAAAATATTGGAGG TGATGCAAATAATATTTTTTTCCTCCATTTTTCTTTTGTATAATGCTGAATAGTAGCTGATTACTTTTGTTTTTATTTTC CATTGTTGTGCAGGAAGAAGATCCTGGTTGGTATTCCAGAGCATCTAACTCTGTTGCAGACCCTGTTATTGATGTGCAAA TGAATGTGAGTATCAGGAAGGCTATGTATTTATTATATATAATATAATGCTGAATCCTTATCTTGGTTTGGCATTTTATC CTGACGGTATACTTAGTTTTCATTTATACTTCTGCCAATGACCTGTTATGAGCTTTACACGATATATTCATCTATCTATT TCATCAGAGTTGCTTTAGAATAGAAGTACTGAAAGATTAGGAAATAGTCTGGTTCCTCTCTAAACAAGTAAGAAAACCTG TTTGAAGATAAAAATTCAAGAACCTGGGCATATGCTGTGTTCTTGCAACTTTCTTGCACCAGGCATGCATCCAATTCTCA TGCAACCAAGAACAAGTTCAATGACTTCGCTGTTAAGCCCTGTGCTGAATTATTTATAAGCCATCTAGGATTTGATCTTT AGATTTAAATTAATGTAAGAGACTTGTCACTGCAAAGTTGAATAAAGAGAAGTGCAATGAGAACATCATGTTTTTCTCCA CTTCTGCTGCTACTGTTAACATTGTTATTTCTCCTCCTTCATCCTGTCTTGATTATCTCACAGCACAATTCCAAAGTTGA ACCAATAATCGAGAATGGGAACTCATATCCAGAGATAAAGACCATTTCCACTGAAAATGGAAGTCAAGTTGCAACCCAGG ATAAAGATGTTGTTATTGAAGGCTTTGGTTCAGTTGAAGTCTATGATCAATGGATTGCACCTCCAGTGTCTGGTCAACTT CCAAAAGCCAGATATGAGGTAGGAATATAAAATTCATTTATTTCACTAATTTTTACTTTTTCTTCTGTGTTAATTTATTC TTATTCTTGAGCTACTGTTTTTTTTTAATATGTTCAGCATGGAGCTGTAGTCATGCAAGACAAATTATACATATATGGTG GAAACCACAATGGCCGTTACCTTAATGATCTTCATGTAAGCATATGCTCAATATCTCTGTTTCATGAATCTAAGCATTTT GGCTAAGCACTAATATATCTTGTGAGGTTGATTGAAACCGCCAAGTTTGGTTTAAGTAATGGTTTATCACATGGTTTAAC TGCTAAACTTTTCTTAATCTCGCCCTTGAGCTGACTACACTATATGCTATCTACTTTGAATTACATGGAAACGATACAGG TTCTCGATTTGAGAAGTTGGACTTGGTCGAAGATTGAGGCTAAGGTTGTAGATGAGTCTACTGACTCGTCATTCTCAGTA ACATTAACCCCTTGTGCTGGCCATACACTGGTTTGTATTGAAAATGATTCTCTCAATTGAAAAACCCTACATAACCTTAT CTGCTATATTCAATGTGTTGTTTCTTTGTTTCTAGTACTAATTCTGGAATACTTTGGATTTTGACCATTGAAACTTTGTC ACTGTAGATTCCATGGCAAAATAAGCTTCTGTCAATTGCTGGGCATACCAAAAATCCTGACGAAAGTATTAAAGGTATAC AATAATAGTTAATATATCTTATCATTATGTTAGGCGTTGGCACCATATCTGTGCAAAACTTAAAACACGCTCATTTAGAT GAATTTCAGAAAAGAAGCTTTAAGAATTTTGATGGTTATTTCACCTCCAAGATAAAACTAAAAAACATGATACTATTACT ACATTCACCTTAAAGTGGATAAGTGTGAAGAGTGATGAAATTTTAGTGTACATACTTAAGTGAAACATTTATGTGACAAA TCTTGTTTGTATATTCTCGTTGAATGATGGACACTTATGAATTTTTGCTTCATTGGTTCAATCTAAGCCATCACTTTTTT CGGTCTTTTATTGCCGTTATCTTTTCTATATTTACATTTAAGCATCCATTTTTTTATATTATTACATACTAATTAATATT ATGACAGTGAAAGTGTTTGATCCAAAAGTGGCAACTTGGTCGACTCTAAAGACTTACGGGAAACCCCCGGTATGTATCTA TTTATCTTCCTTTTGTGTAACCCAAAAATCTTAGAAAACTTTTGAATTTTGTGTAGCATGTGACATGTATGTTTTTCGCT TACTACCTAACAAGAAATGCATAAATTTAGTGGTTTTTGATATATGGTACGCACATTTAATAAACTTCTAAGTTGCTTTT TGTTTCATCTATGGTTTTTAGGTATCACGTGGAGGCCAATCAGTCACCTTAGTTGGGAATGGCTTAGTAATTTTTGGTGG ACAAGATGCAAAGAGAACTCTCTTGAATGATTTGCATATTCTTGACTTGGAATCCATGACTTGGGATGAAATCGATGCTG TGTAAGAAGTTTCCTGAAGTAACTCGTTCTATCTTACTAGTTTTCTAAAAGAAATGGAAAGGGCAACTTGCATGGCAAGT TTCAGGGAATCGTGGGTTGATTATAGGCAGTTGAACCTTGCATTTGCAAGAAGCTAATTCCTCACTGGTTTCTATTTTAC CTTTTTTTTTGGGGTGGATATGGATGTTTTAATTTATATGCTTGTAAATTTTATTATCTTTAGGGTGTATAAAAAACATT GAAACTATTGAGAGGTCCCACATTGACTAGAAATAAGGCCATTAAGTTCTTATAAATGGTAGAGAAAGCCTCACCCTTTA GCTAGCTTTTGGGGTAGAGTTGGGCCTAACTCAACTTCAATATGATATTAGAGCCCATCATAGATATGTATATTGAGCCA CTCTTAAATGGGCTACCTGCCATGTGCAAATGTCCAGTTCTTAAAGTTTAACGCTCTAGATGTCTAGCCCTGGGCGTGAG GGGGTGTTAAGAGGTCTCACATTAACTAGAGATAAGGCCAATTAAGTCCTTATAAAGGGTAGAACAATCATCACATTGAG CTAGCTATTGGGCTAGAGTTAAGTCTAACCCAAAATCCCAAATTCAATAGAAACAAAATGCATTTTGACTTTGTTCTGCA ACCATCTTCTGCACGTATGCCAAAATCTGGTTTTCATACATGGTAATTATGTTATTTTCATCAGTAGTGATTAGTGAATG CTATTCTTGATTTTCCTGTTCCAATATAGAGGGAAAAAATGATAAAGGAAACATGTTATTGTTTGATGCTAAAGAAGTCT CAATTGGCAGTGGGGTTCCTCCTTCTCCGAGGTCTGATCATGCTGCTGCTGTACACGTGGAGCGATACTTACTTATCTTT GGTGGGGGTTCACATGCGACTTGCTATAATGATTTGCATGTTCTCGATTTGCAGACTGTAAGACCATTGCCTTTCCTATT AAGTTAAGGACTTGAAAGATCATCATCTAATAATGATCTATGTGAACTATGCAGATGGAATGGTCTAGACCAACACAACT GGGTGAAATACCAACAGCACGTGCGGGACATGCTGGTGTGACAGTAGGGGAGAACTGGTTCATTGTTGGTGGGGGTGACA ATAAGAGTGGTATGGCTTGTCGTCACCTGGTCACTTACATTTACTAAAATGCTGTATAAACCAATGTCACCACCATTGCA TTCTGATAAAAAATTAGCATGTTACCCGTATATTCCTCCCCTTACGAATACATTATAGAGACTTAAGAGTAAATTCAAAC AAGCTATATTCCTATGAGATGCCTTGCTTGTTGTGTTTCCTTTAATTCCTTAGTTTCTCTGTGGTTTTGGATATTTAATT CATAGATGAAGGAGGTTAACTGTCACTGTTTTCTGCCTTGATCCTTATAACAGATATGAAGTTGAAGTAACTAGTAAAAA TTATGGTTTTAGAAAGGGGCAGTAAAAGTTATAAAGGACTAATCTATAAAGCATTTCTGAGTTGATATGATAATATAAGC TCTTTTTTTTTTTTGAAGAATACCATTCTTGGTAAAAGAAAGTTTACAAGGAAAAACATTACTGTTTTATTGGGATCATT GTGAAGTGCAACTTCTGGTGTAGTTATTATACATCTCAATGGCTTCATCACCTAGTTTTGCACTGGTTGCAAATTTATTA ATGATTTTAGATTTGAGGACATTTCCAGTGCTGTCTCACTGTTGTTATATATGCCTTGCTTCTATTTTTATATTCCATAT TATTCTGCAGGGGTTTCAGAGACTGTTGTGTTGAATATGTCTACGCTGACATGGTCAGTGGTTACCTCTGTTCAAGGCCG TGTACCTGTTGCTAGTGAGGTACTTTTAATATGCAGAGGCCTATTATCATGGGAAAATTTCAATTATTGAACCCTTGTTA AAAATATTAACCATATAGGAAAAATAACCACTTGAAGTGGTTATTATTTATAATATATTGGTGTTCCCTCTTTTATTATT GTATTTTTTCAGGTTTGCATACAAATTTTAACCATACTGTCATATGGGGAAGATACCCAGACCTTTCACATAGTTTTCTA GTGCCATTTCCTTAAGATATTAAAATGTTTCTCACTGCAGGGCTTGAGTTTGGTTGTAAGCTCATATGATGGTGGAGACC TACTTGTATCATTTGGAGGATATAATGGACGTTACAACAACGAGGTGAAGATTATTTCAAAATCTCAGGCGTTTCCCTTT TCTGCTTTCTTTTGCTTTTGTTGGATAGTTCTCCCTCCCCTCATGTAGGTTGCTGCATTCAGGTCTATGTCCTTAAACCA AGCCATAAATCAACCTTGCAATCAAATACATCTGAAAATCCTATACCAGACAGTGTTTCTGCTGTTCACAATGCCACAAA TGCTACTCGAGATGCGGAGTCTGAATTTGAAGCAGGCCATGAAAGCAAAATTAAGGAACTTGTCGTGGACAATGGTGATT CAAGAGTATGTATTATTGCAAAGCTCGACCTTTTTCACTTTGACCAACATTGACCAACTCATGTGGCCTATGTCATTGGT CCATTTAGTGACATTTCACTTATTGCTGATTCTAGGACTGAAGTAAGGATAATAATGAAAAATTGTTTGGAAGCTCATAA TAAACTGACAGATACATCATGCATGCATTCATAGATATTGGAGACCTATTTCACTCATCCAAAATTGCAAATACACTCTG GATCATTCAAGTTATAGGCATAATCGCATCCTACATTTGGTGCATTTCATTTTATTAATACCTGCCATTCACCACTTTCA AATTTTGATTTTTGGGTATCTTACAGAAATTGAAAGGCGATGTTATATCAGTCCTGAGGGCTGAGAAAGATGAATTGGAA TCATCACTCAGCAAGGAGAAGTTGCATACTCTTCAACTAAAGCAAGAGCTTGGAGAAGCTGAAGGACGTAATTCTGACCT TTGCAAGGTAACTACTTTAGTAGTTGATTCCTTCTCATTTCTGAAACAGTTGAAAGTTGACAGGAGATTTTGTGTTATCA GTACATATTGAACAGTGCTTAGGTAGAATATTCGTAAATGATGCTGTGAAAATCAAATAATTTCTCTATGCTGTGTCAAT TCCCCTATTTAATTTCGTGCTAAGAAAGGATTAAGTAATTTGGACAGGTGATTGTTGGTGAAAAGCGCTCTAATACCATA ATCAGAAATATGAGCCCAACACTATATAAGAACAAAATAGGAACATTATCTGATGTTCTTAAATGCTATTAAGAAAGGAT TAAGTAATTTTGAGGGGTGGTTGATGATGAAAAGTGCTTCTGATACAATATTAATAAATATTAGCTCAAAAATATATAAA ATGACAACATGAATATTATTTGTTGTTCTTCAATGCTATAACGGTCTTCATTGTTATCGCACTGATAATGCAGGAACTTC AATCAGTACGTGGTCAGCTTGCTGCTGAGCAGTCAAGGTGTTTCAAACTTGAGGTAAACATTAATTCTTCTGACAGCCTT CCTCTCTGGGTTTGTCAATAAAGTGTTTTTGAACACATACTATCATGACATTGAAAAGTAAGGACAGACACTCAGACAGT GTCTAAAACGTGTGCCCTGATCTCTCCAGTTGACCCAACTCAAAATATGATTCAGACCCTGTCTGGTTACACCCCCAATA TGTATTTTGGGGCACTTTTCCTTTCACGAAAAGTAATTTGGTTGCTATAAATTGTTTGGGTACAATTTACATTTGTGGTG GGTACTGGGTAGAATAACTTTTGGGAGAAATGAGATTTTTTCACTTTTCCCGTGAAAATAATTCATTTTAGGTGTGAGAT CCACAAAATATAACTTTAGTATTTATATTTAAAGTAATTTTATCTTACCATCGAGATAAAAATTATTCTTTTAAACATTT TTACCCTATGATTTCCAAACACAAGTCATTCAACCAAATAGCATTATTTCAAAAATTATCTTTATATTAATTCTAACAAA AGCTATTCTACTCAATTTTAAAATAAACAGGTCTGTTTTGTTAGAGGCAAAAGTCTGGAAGAAATCACAGAACATATGTT GCCTAAACAAAAAAGTAGAGTGGTTTTGAAATTATAGTTAATCGCTTGGAGTGAATTGTTGACTCTCTAGTTCTACTTAC CTACAGTTGAGAATTGCAAAGTCAGACAATTATCAACTGTAGGCAATGGAATGAAGTGATACATATTTCATCACTGATGT TGTGAGTGTGTGTGTGTGGCTAATGTAGCTGACTGAAGAAAAGTTATTAGGGAAACATAGTGCACCACATCATGAACTAA GCTGTTCATAGTGAATTTCAAAATTTTCCATTATTTGCATAAAAAGTGCTTATTTAATATCTTCTAATCGCACAAAATAC GAATTATTCTATGGTCATTTTGGTGTAAGGGTGACATAATGAACCATATTTTCCTTTTAGAGAAATCATTCTAATAAGAT CCCTGTTTGTTATGTTTTGTCTGAGTCTGCTTCAAAAGTTTGGCATTTGTCTCTTCATATTATGGATAAAGAATTTGAAA TTTGCTTACTGAAGAGAATATTTGGATCATAGGTGGAAGTTGCTGAGTTAGGACAGAAACTCCAAACAATTGGGACATTA CAGAAGGAACTTGAACTCCTCCAACGGCAAAAAGCTGCATCTGAGCAGGCCGCCTTAAGTGCAAAACAAAGGCAAGGTTC AGGCGGTGTATGGGGTTGGCTTGCCGGTACTCCCCCTAACCAGCAAGAGGAAGATTGATGAACGCTTGA 

CDS sequence (LotjaGi5g1v0222400.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCCTCCACAGAAGCCATGCGTCTTTTTGTGAAAATATTGGAGGAAGAAGATCCTGGTTGGTATTCCAGAGCATCTAA CTCTGTTGCAGACCCTGTTATTGATGTGCAAATGAATCACAATTCCAAAGTTGAACCAATAATCGAGAATGGGAACTCAT ATCCAGAGATAAAGACCATTTCCACTGAAAATGGAAGTCAAGTTGCAACCCAGGATAAAGATGTTGTTATTGAAGGCTTT GGTTCAGTTGAAGTCTATGATCAATGGATTGCACCTCCAGTGTCTGGTCAACTTCCAAAAGCCAGATATGAGCATGGAGC TGTAGTCATGCAAGACAAATTATACATATATGGTGGAAACCACAATGGCCGTTACCTTAATGATCTTCATGTTCTCGATT TGAGAAGTTGGACTTGGTCGAAGATTGAGGCTAAGGTTGTAGATGAGTCTACTGACTCGTCATTCTCAGTAACATTAACC CCTTGTATTCCATGGCAAAATAAGCTTCTGTCAATTGCTGGGCATACCAAAAATCCTGACGAAAGTATTAAAGTGAAAGT GTTTGATCCAAAAGTGGCAACTTGGTCGACTCTAAAGACTTACGGGAAACCCCCGGTATCACGTGGAGGCCAATCAGTCA CCTTAGTTGGGAATGGCTTAGTAATTTTTGGTGGACAAGATGCAAAGAGAACTCTCTTGAATGATTTGCATATTCTTGAC TTGGAATCCATGACTTGGGATGAAATCGATGCTGTTGGGGTTCCTCCTTCTCCGAGGTCTGATCATGCTGCTGCTGTACA CGTGGAGCGATACTTACTTATCTTTGGTGGGGGTTCACATGCGACTTGCTATAATGATTTGCATGTTCTCGATTTGCAGA CTATGGAATGGTCTAGACCAACACAACTGGGTGAAATACCAACAGCACGTGCGGGACATGCTGGTGTGACAGTAGGGGAG AACTGGTTCATTGTTGGTGGGGGTGACAATAAGAGTGGGGTTTCAGAGACTGTTGTGTTGAATATGTCTACGCTGACATG GTCAGTGGTTACCTCTGTTCAAGGCCGTGTACCTGTTGCTAGTGAGGGCTTGAGTTTGGTTGTAAGCTCATATGATGGTG GAGACCTACTTGTATCATTTGGAGGATATAATGGACGTTACAACAACGAGGTCTATGTCCTTAAACCAAGCCATAAATCA ACCTTGCAATCAAATACATCTGAAAATCCTATACCAGACAGTGTTTCTGCTGTTCACAATGCCACAAATGCTACTCGAGA TGCGGAGTCTGAATTTGAAGCAGGCCATGAAAGCAAAATTAAGGAACTTGTCGTGGACAATGGTGATTCAAGAAAATTGA AAGGCGATGTTATATCAGTCCTGAGGGCTGAGAAAGATGAATTGGAATCATCACTCAGCAAGGAGAAGTTGCATACTCTT CAACTAAAGCAAGAGCTTGGAGAAGCTGAAGGACGTAATTCTGACCTTTGCAAGGAACTTCAATCAGTACGTGGTCAGCT TGCTGCTGAGCAGTCAAGGTGTTTCAAACTTGAGGTGGAAGTTGCTGAGTTAGGACAGAAACTCCAAACAATTGGGACAT TACAGAAGGAACTTGAACTCCTCCAACGGCAAAAAGCTGCATCTGAGCAGGCCGCCTTAAGTGCAAAACAAAGGCAAGGT TCAGGCGGTGTATGGGGTTGGCTTGCCGGTACTCCCCCTAACCAGCAAGAGGAAGATTGA 

Protein sequence (LotjaGi5g1v0222400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSSTEAMRLFVKILEEEDPGWYSRASNSVADPVIDVQMNHNSKVEPIIENGNSYPEIKTISTENGSQVATQDKDVVIEGF GSVEVYDQWIAPPVSGQLPKARYEHGAVVMQDKLYIYGGNHNGRYLNDLHVLDLRSWTWSKIEAKVVDESTDSSFSVTLT PCIPWQNKLLSIAGHTKNPDESIKVKVFDPKVATWSTLKTYGKPPVSRGGQSVTLVGNGLVIFGGQDAKRTLLNDLHILD LESMTWDEIDAVGVPPSPRSDHAAAVHVERYLLIFGGGSHATCYNDLHVLDLQTMEWSRPTQLGEIPTARAGHAGVTVGE NWFIVGGGDNKSGVSETVVLNMSTLTWSVVTSVQGRVPVASEGLSLVVSSYDGGDLLVSFGGYNGRYNNEVYVLKPSHKS TLQSNTSENPIPDSVSAVHNATNATRDAESEFEAGHESKIKELVVDNGDSRKLKGDVISVLRAEKDELESSLSKEKLHTL QLKQELGEAEGRNSDLCKELQSVRGQLAAEQSRCFKLEVEVAELGQKLQTIGTLQKELELLQRQKAASEQAALSAKQRQG SGGVWGWLAGTPPNQQEED 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles 1 23 23 13.2
PANTHER 1 574 574 0.0
PANTHER 1 574 574 0.0
Gene3D 59 147 89 4.4E-10
SUPERFAMILY 80 199 120 5.75E-18
Pfam 101 142 42 2.8E-9
Gene3D 148 430 283 2.7E-35
SUPERFAMILY 165 399 235 6.8E-42
Pfam 208 257 50 5.7E-8
Pfam 270 316 47 3.3E-11
Coils 524 558 35 -
MobiDBLite 552 579 28 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Fatty-acyl-CoA binding Interacting selectively and non-covalently with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group.
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0222400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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