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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0228600 |
| Transcript ID | LotjaGi5g1v0228600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Werner syndrome-like exonuclease; TAIR: AT1G56310.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q8N9H8|MUT7_HUMAN Exonuclease mut-7 homolog; TrEMBL-Plants: tr|A0A0B2QKP3|A0A0B2QKP3_GLYSO Putative exonuclease mut-7 like; Found in the gene: LotjaGi5g1v0228600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53580535..53586823) extracted from Lotus japonicus Gifu genome v1.2.
AACGAGACTCACGCAAATTGAGCCGCAGCAGCAGCAGAAGAAACAAAGCGATTTCAGAGAGAAGCGATTTTCTTCTGTCG AATTGATTCCAATTGCAGCAGAGTGTGAGTTTTTCTTCTTCTTCTTCTTCTTCTTGTTCTGTTTGTTTTCTTCTTCTTCT TCTTATTCCATTGTTCTGTGTGTTTTGTTGTGTGTACTGTTTTACTTGTCATATTCAAAAAAGGGAAAAGAAAAGCAACT TCAGAAAAAGTACTTATTTCCATTTGTTTATTCTTTTGTGGGTTTTTCCTTTTTTCTTTTCTCAAGTTGTCTCCAAAAGT GGTGAAACTCAATTTTCCTCTAAAAATCGCTGTAACTTGATTTGTTGGTTTGTTTATTCCACCGCATCAAACTAACATTG TACTCAAAAGGTACCAATTCTCTGTAGTTGCTGCCAAAACCTCTGAAAGGGCAATTTTAACCTATTTGAGTTACTAACAT GCTTCAGTGGAATAGTAGAAATGGCAAATCCAGTATCAATTTAGTGTATCTTCATTGTTGATGTTATCTTCGATATTTGT TACTCTTTGAGTGAAGTTTTTGGTGTTGGTATTGCTGCATTTGTTTAAAAGCGAGCTTTAGAGTTGAGTTGATTGAATGA ATGTGTCAGTTGAATTAAGAATCATGATGTCGAGGTCTGTGAGTTGGCCTGCTTAAATTTGTTTTCTAACAAGTTGATGC TCTGATTGTAGGTTTTACTGGGGATGGGTTCGGAGGAGAATGTAGCGGAGACGTGGAACGAAGAGGACAGTGCTTGCAAA GCGTGGACCTTATGCAAACATACTTTTAATAACTTAGCGCATGTTTCTCCTGTGGTATTTCTGTTCCTGGTGAAACAGTG TTACTTTTATGGTATGATTTCTTTTTCTTGCAATGCTAATAATTATTTTCCATGCCAGTTTCTCTCTTTTTTGGAAAAGT AATTTTGATATGTACCTGGTACCTACCCAAGTCACATGTATGTACCTAATGCATTTTGGTACCGGGCATGATAACGACTT CAATTTTGGGATGCCCTGGCTTCAAAGCACCTAATATTGATTCAGGAGGTGTATCTTAAATGTGTTGACATGCAATGATT GCTTGTACTTCAATTTTTCCTCCTTTGAGAGTTAGAATGATTAGTTAAAGTTTACCAAGGTAGTAAACCTATTTGTTGCA TTTGAAGTTGAAGATTGTCCATTAGATTTCATGTGGTTGTGTCATCAATATGCATCTTGTTAATTATATTTTTCATTGTT GTTTCTCGTCAAATGACATTGCGTAGGCACATGTAAGGCGGGAGCAAAATTCCGAGCCCTTCAAGATCAAATATGTCTTG TGCTCCATAATGATCCCAAACCTGGACCAGCAACTTTTATTGTTCAGTGTCTGTATGTGTCGCCTTTATTTGAAGATAAT AATAGTCAAGGATTTACTCATTTGCTTGTATCTGCTCTTCGCCACTTCCTGAAAAGGTCAACCACTTCGGAAGACTCTTT GGAAATGAATTACTCGGCTGCCCGCCTACTTCTGGATATTATTAGAGGCCAGGTCCATCATGATGATAAGATAGTTATCA AATTATTGGAGATGTTTGATATAGAACTAACAAATATGGAGAAAGCAATGTGCCAAATTGAGGAAAAAGATGATTTAAGT TGTGGCATGGCAAAAGAATTTGTTGAGCAGTATATTTTTAAATTGGTGGAGTCCAAGTTGTACATGAGCGCTGTCACTTT AATAGAGAGTTTATCTATCCGCCATTATGGTCAATCTTTTCTCCTTGATATGATTAAAAATAATCAATTTAAACCAGCAG AGAAGTGGGCTACATTTATGGGGAAGCCAATGTTGTCCATGCTTATTGAGGAGTTACTGGAGAGGAACATGCTAAAGAAT GCCTATGAGATTATAAAGGAAAATAATCTAAATCAGGATTTTCCAGATGTATACAAGAAGTGTAAAGAAAGGTACTTGAC TTGTCTTTGTTAGCATGCGGCAGATTTTCCCTTTCCTTTTCCTGCTGTTTGATTTGCTCAGAGCATCTTTTTAAATTCTT ATTTACAAGATTATGTCATTGATTTGCAGAACACTAAAGAGCTTAGCGGAAAAAGGATGTTGGGATGTTGCAGAAGAAAG AACAAACAATGACAGACAACTTATGGAATATTTGGTTGGTAGTTATTTTCATATTTTGCATGACTGCCATTCTACAGTGA ATATACTTAGCTGCATAGGTGTAGTGTATCCATTTGAGACTCTGTAAAATAGAAAAGCTTTACTTTTTAAATGGTATAGA TTGCTGTTTTTACTGAACGTGTGGCCATTTTATTAACATATGTGATATTTTAGGAGTATAGACCTATAAGCTGAATAGGG ATACTCCGGTTCTCCATTCCTTTGCAATGGAAATGTAATAAGGGTTATCATTCTTTTATGTTCAAACTTCAAACCCTAAT TTTTGACTCAGTATCTACGCATTGGACCCATTAAACCATTTACTCTTATGTTCAAAACCATCAACCAAAATATCACACTT CATCTAAAATCAAATAGTCCCACTTTTTCTTGCTCTCCGAAACCCTAACCTTACGTCCTCCAAAATTCTTTAAATTTCAT CAATTTCCATATTTTGAACTTTTCAGATCAATTTTTCCAAACCTCTGTTAAACACCTAATTATGGAAGTATAAAATGAAG ATTTAGGGGTTTTAGATTGAGTGAAAATGGCACAAGTGCTTAGATTGTGGCAATTAAACAAATTACAGATTACATTTGAG CAAAAACTTACTAGGGGATTAAAATCGCTCATTAGCCATAATAGGAAGACCAATGGTGCAAATAAGTAGTTCTAAATGCT TTCTAGAGCAATCATTATTAGAATTTTCTTGGAAGTTTCTTCTTATCCTTGATAGCCCCAGTAAAATCTTAAATTGTATG CTATAATTTTTTTATTTTATATGTTCAAGGTTTATTTGGCAATGGAAGCTGGTTACAAGGAAAAAGTGGATGAACTGTGT GATCGGTACTCCCTACAGAACTTTTGGGATATTAAAGGTAAGTCACTTACTTGTGACCAATGGAAATTTATAAAGGAAGA AAAGATTGTATGCTAATAAAAACGGAAGATTATGTTTCATTAAGATATGATTGTTAGTCACTTATTCTTCTTTTGCCTCA AAAGTTATGTTTTGTCCACTCATTTTCGATTTTTGTTCCTGTATCTTGATGGAATTACTCCTGTTTATTCATGCATTTCT TCTCAGCTTTCATGGGTTAATGTTATTACCATCTTGTGATATGTGCATGTTAGTTAAAACTGGGATTTTAATCCCAAAAT TCTACGATCATGCAATTAGTGATGTGACCAGCGATTTAGATTTGAAGAAAATCTTAATCTAGCTTAATCCCACTGAAATT GCGATTTTAATCCCAAAATCATAGAAGAATCTCGATTAATGATTTGGATCTGGTTTTCGACTAGTTTCCTTAAACCGATT TCAATTATGTCCTAGCCCTAAAATTTTAACCGGTCTCTTCTGCTTCAACCCTAAAGATTCTTCAGTGAGCAATACTGTTT ATCATCTTCCTTGTGCTCTATTGGCGAGTTCTATGTTTTCTGGCGACGTTTCTTCTGTTCTCTGACACCATTTCTTTTGT CAGTGGGTTCTCTGTTCTCTAGTGAGTTCACTGTTCATTGTTTCTTTTGTTTTTGTTTCTTCCTTCAGTTTCGCAAGTTC TCCAAGGCATATATGTTAGATTAGACACCTAGATTCTAGAATTAAAAAATTTCCATTAACTATTTTCTATTTACTTTTGG TCTCTAAGTTTTATGCCTTTTAATTCGTAAAAACTTGATGTATGGTGCTTGGAGTTGCTAAGGTTTTAAGTACTTTATAG CTTATGTACGACATTCTTATGGATTATGAGTTATGATTTATGTGTGCAACTTCTAGTGATTTAAAGTTTTATCCTTGTTT ATGCTATTATAAATATGTGTGTGTGAATTTTTGCTTAGATTTACAATTTTCACTTCCCCCGATTTAAGGTAAAATACTGT TTTTTGTCTTGCAGTGCCTGAAACAAGTATTCTGCAAGGACGTTATTTGCATCTTGATGAACTAATGGTTGAAGACATCA TCTGGGTTGATGAAGTTGAAGGTTTGATAGATGCAACTTGTCATATTGAGGGTGTTAAAATTGTAGGTGTTGATTGTGAA TGGAAACCAAATTATGTAAAAGGCAGCAAGCCAAACAAGGTAAATGAAAATGATCTTCCAAACAGATTAATCTTTCTCCA TACATTTTCTCTGTTTAGCTGAACTGTACGAAACAAAAATATGTGTGGGTTTGAGCTTTCCTAGCTATGGCATGTTTCAT ATCAAAAGCTGAACTCTAGATTCTCCTGTTTCCCCTTTTCTCCTTGCATTTCCATGTTTCAGGTTTCTATCATGCAAATT GCCACAGAAAAGATGGCTTTCATATTTGATCTGATAAAGTTACACAGAGAGGTGCCTGACAGTTTAGACGACTGTCTGAC TCGCATATTGCTGTCATCCAGAATACTAAAACTTGGTATGAAAATTCTTAATTCTTTAGTCTCATGAATATATAAACAAA AATACTTTTGTGAGCATGACCGATCGCTAGGTGTGATAATTATTTAAGTGAAAGGAAATGCTGCTATTGATGGGATGTGA TTATTGTTTTGTAAGTCTGAATTAGTAACCATTGCTGCTCTCTATGGCTTGTATTTTCAGGGTATAATTTCCAATGTGAT ATAAAGCAACTTGCTTCCTCATATGGAGAGTTGAAATGCTTCAAGAACTATGAAATGTTGCTTGACATTCAGAATGTTTT TAAAGAACCTCGGGGTGGGTTGGCTGGGCTTACAGAGGTACTGTATATATGATTGCCCTTTTAGTGTCCCCTTTCTCTTT TTTTATTTGTGGGAGTGGGGTTAAATGGGAATAACGACAATTTCCCCTGTTTTTGTATGTTGGCTTATTTTGACAAAGCC CGTGTGTTTATTGATAAATCAGAAAATTCTGGGTGCTCGTTTAAACAAGACAAGACGAAACAGCAACTGGGAGCAACGAC CTTTAACTGAAAATCAAGTAATTGCTCCCCTTTCTTCTTTCCTATTTATTAATGCTCTCCACATTCATAAAACTTATCTG ATAATGCAATTGTGGTCTTTCCTTAGGGAGCTCATTCCTAGTTTGTTAGGACTTGTAATGCAGTCTTTGTTTTATGTAGT TTTTATTTGCTCTTTTCGAGGGCTGGGGGGGGGGGGGGGGGCTAAACACAGTTTTTCTTTAATAGCGGACTGAATGATCC CAAATTATGAGATTACCACCGAATGTGTGGATCAGCTTATCTCTCGTATTCGAGCACTGGGTAAGTTATGCAGTTACATT AAATACTGGGAGGGAGAGATTTTCTGCGTATAGTTGTCGTCCTACTGGCTTGAATAGAATTTCCTCCTGTGGAAGAAAAA ACTATGATTTAGACCCCCAAAAGTAAATCTGCATATGATTCCAAAGAAACTTATCAGTACTAGATAATGCATGGATGCTT ATGAATTTATGATGAGTGCAGTCTAAATGTATAATCTGTTTGAACCAAACCCTTCAACAATCTAACAGAGTTCTATGTGT GCAGCTAGAATATGCTGCCCTGGATGCTGTTGTACTGATTCACATTTTCCGCCATCTTCCGGATCAAGGACATGATAAAT TTGGGTGGAAGTCTTGCATCGTGAGTGACAAACAATACCCTTTTTCTGCAACTTTCCTTTATTGCAAATTTTCTATTTCG GTTTTTTTTGGGCATTTTCTTTGTTTTCAGAAGTTTCATTAAAACCTTAGTAAATATTTACCATGCATTGATTATAATAC TCGCTTTGTATGCATAGATAATGGCTTTTCCTGTTTTTAACTGCATTCAGATGTCTCACTCGGAAAACACCAAGAAATCC AACAAAAAAAAACATGTTGCCAACAGTCAAATAGACCGTGATTGAGACCACCCCAGCATTGATCCTCAACTGAAATGTAA ATAGTAAGTTTCAAATAGGAAAAAATAACATTTTTTCAAATGTAACTATTTTGTCTCCATTAGTTTCATTGAATATTTAT CTTGTCGGTTTTTTTTTTTAAATGGCAGTTTAATACTGGTAATTTGGACATGCTATATTTAATTGAAACTCAAAACAAGC ACAATAAAACTTAGCTAAGGATGATGACCTTGGCTAAATTCAGATTGGA
CDS sequence (LotjaGi5g1v0228600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTCGGAGGAGAATGTAGCGGAGACGTGGAACGAAGAGGACAGTGCTTGCAAAGCGTGGACCTTATGCAAACATAC TTTTAATAACTTAGCGCATGTTTCTCCTGTGGTATTTCTGTTCCTGGTGAAACAGTGTTACTTTTATGGCACATGTAAGG CGGGAGCAAAATTCCGAGCCCTTCAAGATCAAATATGTCTTGTGCTCCATAATGATCCCAAACCTGGACCAGCAACTTTT ATTGTTCAGTGTCTGTATGTGTCGCCTTTATTTGAAGATAATAATAGTCAAGGATTTACTCATTTGCTTGTATCTGCTCT TCGCCACTTCCTGAAAAGGTCAACCACTTCGGAAGACTCTTTGGAAATGAATTACTCGGCTGCCCGCCTACTTCTGGATA TTATTAGAGGCCAGGTCCATCATGATGATAAGATAGTTATCAAATTATTGGAGATGTTTGATATAGAACTAACAAATATG GAGAAAGCAATGTGCCAAATTGAGGAAAAAGATGATTTAAGTTGTGGCATGGCAAAAGAATTTGTTGAGCAGTATATTTT TAAATTGGTGGAGTCCAAGTTGTACATGAGCGCTGTCACTTTAATAGAGAGTTTATCTATCCGCCATTATGGTCAATCTT TTCTCCTTGATATGATTAAAAATAATCAATTTAAACCAGCAGAGAAGTGGGCTACATTTATGGGGAAGCCAATGTTGTCC ATGCTTATTGAGGAGTTACTGGAGAGGAACATGCTAAAGAATGCCTATGAGATTATAAAGGAAAATAATCTAAATCAGGA TTTTCCAGATGTATACAAGAAGTGTAAAGAAAGAACACTAAAGAGCTTAGCGGAAAAAGGATGTTGGGATGTTGCAGAAG AAAGAACAAACAATGACAGACAACTTATGGAATATTTGGTTTATTTGGCAATGGAAGCTGGTTACAAGGAAAAAGTGGAT GAACTGTGTGATCGGTACTCCCTACAGAACTTTTGGGATATTAAAGTGCCTGAAACAAGTATTCTGCAAGGACGTTATTT GCATCTTGATGAACTAATGGTTGAAGACATCATCTGGGTTGATGAAGTTGAAGGTTTGATAGATGCAACTTGTCATATTG AGGGTGTTAAAATTGTAGGTGTTGATTGTGAATGGAAACCAAATTATGTAAAAGGCAGCAAGCCAAACAAGGTTTCTATC ATGCAAATTGCCACAGAAAAGATGGCTTTCATATTTGATCTGATAAAGTTACACAGAGAGGTGCCTGACAGTTTAGACGA CTGTCTGACTCGCATATTGCTGTCATCCAGAATACTAAAACTTGGGTATAATTTCCAATGTGATATAAAGCAACTTGCTT CCTCATATGGAGAGTTGAAATGCTTCAAGAACTATGAAATGTTGCTTGACATTCAGAATGTTTTTAAAGAACCTCGGGGT GGGTTGGCTGGGCTTACAGAGAAAATTCTGGGTGCTCGTTTAAACAAGACAAGACGAAACAGCAACTGGGAGCAACGACC TTTAACTGAAAATCAACTAGAATATGCTGCCCTGGATGCTGTTGTACTGATTCACATTTTCCGCCATCTTCCGGATCAAG GACATGATAAATTTGGGTGGAAGTCTTGCATCATGTCTCACTCGGAAAACACCAAGAAATCCAACAAAAAAAAACATGTT GCCAACAGTCAAATAGACCGTGATTGA
Protein sequence (LotjaGi5g1v0228600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSEENVAETWNEEDSACKAWTLCKHTFNNLAHVSPVVFLFLVKQCYFYGTCKAGAKFRALQDQICLVLHNDPKPGPATF IVQCLYVSPLFEDNNSQGFTHLLVSALRHFLKRSTTSEDSLEMNYSAARLLLDIIRGQVHHDDKIVIKLLEMFDIELTNM EKAMCQIEEKDDLSCGMAKEFVEQYIFKLVESKLYMSAVTLIESLSIRHYGQSFLLDMIKNNQFKPAEKWATFMGKPMLS MLIEELLERNMLKNAYEIIKENNLNQDFPDVYKKCKERTLKSLAEKGCWDVAEERTNNDRQLMEYLVYLAMEAGYKEKVD ELCDRYSLQNFWDIKVPETSILQGRYLHLDELMVEDIIWVDEVEGLIDATCHIEGVKIVGVDCEWKPNYVKGSKPNKVSI MQIATEKMAFIFDLIKLHREVPDSLDDCLTRILLSSRILKLGYNFQCDIKQLASSYGELKCFKNYEMLLDIQNVFKEPRG GLAGLTEKILGARLNKTRRNSNWEQRPLTENQLEYAALDAVVLIHIFRHLPDQGHDKFGWKSCIMSHSENTKKSNKKKHV ANSQIDRD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 560 | 552 | 5.5E-122 | – | |
| PANTHER | 9 | 560 | 552 | 5.5E-122 | – | |
| SUPERFAMILY | 316 | 533 | 218 | 2.58E-42 | ||
| Gene3D | 352 | 533 | 182 | 6.3E-46 | ||
| SMART | 357 | 535 | 179 | 1.7E-12 | ||
| Pfam | 359 | 530 | 172 | 3.4E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Biological process | Nucleobase-containing compound metabolic process | Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. | ||
| Molecular function | 3'-5' exonuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end. |
Expression pattern of LotjaGi5g1v0228600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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