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LotjaGi5g1v0229200.1

Overview

Field Value
Gene ID LotjaGi5g1v0229200
Transcript ID LotjaGi5g1v0229200.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Pseudouridine synthase family protein; TAIR: AT1G56345.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q7XA65|PUS1_ARATH RNA pseudouridine synthase 1; TrEMBL-Plants: tr|A0A072VMN0|A0A072VMN0_MEDTR RNA pseudouridine synthase; Found in the gene: LotjaGi5g1v0229200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:53638667..53645198) extracted from Lotus japonicus Gifu genome v1.2.

CCAACACTGAAGCAAGCGAGTTGGATCGGCCCGTGTACCCATCCATTTCAGAAACTCGCGGCACCCGTGTTCTCCGCCGC CGTAGCCATGTCAAGTTCCCGCCAAGGCGAACAAACGCATTGCTCCGCCACCGTCACCGCCGAGAACTACCCGGTGCCGC TATCCCCTCCGCTTCCAGCAATCTCGAAGGAAATCGAGCTGAACAGAGCCACCATCGCCACATCAAACTCAGAGCTCTTC ACTCTGTCAAGAACCGACCACATCATCTACGAAGACGACTCACTCATCGCCGTTAACAAACCCCAGGGAATTTACTGCGA CGCCCTCCTTTCCTCCGTTACCACCATCACCACCGTGCCGGAGCTTCACCTCGCTAACCGCCTCGACCGTGACACCAGCG GCGTCATGCTGATAACGAAGTCGCACAAGGTGGCTGCCAAGCTCGTCAAGGCCTTCACCGAGCACAGGGTGAAGAAAACA TACATCGCGCTCTGCACCGGGCGTGCTCCCGATTGGGAAACGGTGACCGTCAGATCCGGTCACGGGAGGTCGAAATTCGG CGTGTGGCGAGTTTACGCCGCTTCCGACGTTGGCCGTGTACTGCCGGGTGGGTCGGTTGTTCGGGACATGGAAACTTCGT TCGAGGTGGTGTCTGTTAACGGGAAGAAGGGGAGGTTCAGGGAAGTTTCTGAGGCTGACATGGAGTTTCGAGAGGGGAGT GGGGTGGTGGTGGTTGAAGAAAAAGCGGTGAACGGTGACGGTGGTGGTGGTGGTGGTGAGGATGAGATAGTGGTGAGAGC GTATCCTAGGAGTGGAAGAACGCATCAGATTCGGTTGCACTGTCAGTATCTTGGGATTTCTATCAAAGGGGATGTGAAAT ATGAGGGTGTGTATGAGTGGAAAGGTGCTACTTATCATGCTCATCATCTTCATGCTGAGACATTGTCGTTTGAACACCCT GTCACTGGTCTTCGTGTTATGGTTCGTGCACCGCTTCCACCATGGGCTAACCTCGCGTTGCAGCCCGAATAACCATGGAG TTTGCATTTTCATGTGAGCTATGTCTGTTTCTCTGTGGATTGATCTCAGCGTCTCATGCAATTTGCACTGAAGAAGGGGT CAGTATCTCATTCTTGCACTCACTATGAGTATTAGATTTGTTACTTTGATCTGGGAGCTTAGGAATTGGCATGTTTTTGG GAATGGAGAGTCATAGAATCAAGAAGGACCTTTGAGCTGTGATGTGATTTCATCTAGTCATGGTAGACCTGAGAAAATGT TGCCGCTATTTAGTAGATGATGATGGGCGGCGGAGAGATTTTGAGGTTCTTGCTAAATGATTTTTAGTCAACAATTTGTT ATCTTTCATTCTGTCTTTGATTACACTGTACATGATAGTCAACAATGAATGTCATTTATGTTTGATATTATTGTGAACAA ATTTGAGAATTATTGCTACGGTAACATGGATTTCCAGGTGCTTCTGGAGAAGGTTTTTTTTCCATTTTGAAATGTGAATC ACTATGATTATATCATAAGTAATGTGGTTGAAGTGAAAAATAGCAATGACACACTCAATAAGACTAATCTTGTAACTTGC AGATGTCTTCAATAATTTGTTTGGTTTGACATAACTTGAAATACCTATCTTGGCAACATGCAGAACAAAAATATATATAC TTCTAGATTTCCACCAGTCCAATGACTTTTCCCACTCTGTTTGACTGTTTCTAGTTTTTTACAAGTATCTTAGAATTAAA AAGAGTTCACTGAAGTAATTCAATTTTGATTTGTCCCTTGAAACTGAGCCATTGTTTCATAGCACATAAGGTTCTAGACA GGTTCAGAATGGCATGCTTTTGAATCTGATGACTTCATCTTACGTATAAGATAAGAGCACTATTCTTATGTTATGCTGGT TCTGTTCATGCAACTAAGCAAGCTATCTTGATTTAATGAACATATCATGCTTCTTTTTTTAACCTTGTATAGAACTCTTA AGCATGTAATAATGGTATTTAAGTGAAAGTGATGCTTGTATTTGTACCCATGACCATGTTTTAATTAGAGAAGTTAAATT CTTTTAAACACAGCCCATTGAAAAACGATATATGAATGGAAATGGATAAATCTGCCACCTGCTAATCTAAACGGCGAGTT TACTGATTCTATATCGGGATAATTCTGGTGAAGTCCAAATCTTTCGATCAAAGAACTGGTTTTGTAAAATCTGATTGCCA TGCAAGCTCCCCTTGTTTTGCTCTGGTTTTCGGATGACAAACTTTCTAGATTGTCTATATGGCTATAGAACTCAGAGTTG AATTATACTATATTAGCTCAAGAAGTTCATTACAAATTTTCAACTTTGGCACTTGGATATGGTGAGTTGAGCGAGTTTCT TACACAAATAGTTATACCTGTGTCTGCATTAATCGGAATTGGGTTTGCTTTGCTTCAATGGTATATGGTCTCGAGGGTCA GGGTCTCTGCTGTTGATCACACTGATGCTGACAACAGGTATAAAAGAAGTTTAATAGGAGATTCAGAGTTGTAGAATGGT GTTCAGGGTCCTGATGTTACCATTAGCTGTGCTGAAATTCAGCATGCCATTTCTGTTGGTATGCTTTTGCCTCCTTCCCT CTCACAATTAACTATGGTGCCAGCAAATAAAAAATTGATCTTATTTTGATATGTTCCCAGGAGCTACTTATTTTCTGTTT ACTGAGTATAGATACCTGACTATCTTCATGGGAGTATTTGGTGCAATAATTTTCCTTTTCCTGGGCTCTGTGAAGGGCTT CAACACCAAAAGTCAATCTTGCACTTATAATGAAGGCAATCTTTGTAAACCAGCACTTGCTAATGCCTTCTTTAATATTG TTGCCTTCTTGCTTGGTGCTCTAACCTCTGTCCTTTCTGGATTTCTGCGGATGAAGTTTGCAACCTATGCCAAAGCTAGA ACAACTCTTGAAGCAAGGAAAAAAATATGAAAAACATTTGTTACTGCTTTTTGCTCTGGTGCAGTGATGGGCTTTCTTCT TGCTGAAATGGCCTGTTGCTGTTGGTGCTTAACGTCTCCATCAATTTATTCAAACTGTATTGTGGAGATGAGCATGACTG GGAGGGGCTTTATGAGTCTATTATTGGCTACAGTTGGAGGGTCGTCAATGGCACTCTTTAGAAGAGTTGGAGGAGGTATA TACACCAAAGCTGCTGATGTTGGTGCTGACCTTGTGGGGATATCCTTGAAGGTGATCCACGCAACCCAGCTGTAAGTTCT TATATTCTTTTCTTATTGATCATCTCCATTCACCATCATAAAATCCTATTTGTTGTAGAAGTTTTGGAGGCCTTTCATGG TTGATATGTTGTCATTCAAAGCATGCAATTTTCTCTATCTTCTATTGAATGTTTCTTTTCTAGCTAAAGTCATCATTTTG TCGTTTTAAACCATAGTGAGTAAACGTGTATTTCTAGTTGCTAAATTTTGTGAATGTTAACAAGTTATTTGAGTCTTATG CAGAATCATCATGTGCGGCTTTATTTGTTGCATCCATATCATCATTTGGATGAAATCATGACTATACAGCCATGTAATAT CCTCTCATCATAAGCTCAATGGGAATTGTGGTTTGCTTGATTACAATCCTTATTGGAACTCATCTGTTTGAAATACCCAA ATAGAACCATACTTGCCATTGTCAACTTCTTTGCTCTGCCATCAGAATTTGCTCTCTATAACTTTGGAACCACTAAGGTT GTGAAGAACTGGTAAGCCTAATGTTCCACCAACCTTCCCTTTTTAGCAGCATGTATAGATTGTTTGGTCTTTATATGATT CAATTGTAAGTAAATCATATTATGACATAATCATAGGCACCTTTTTTTTGTATTGCCATTGGCTTATGGGCTGGACTTGT AATTGGGTACATTACTGAGTTCTACATGCTTACAGGTGAGCAGCCTCTCAGGGTTATACAACTTGCAATATTTCTTCTTG TCTCCTGGTCTGTTGCATGAAATCACTGTCCTTCAAATTTCCAGGGAGTCTAAAATTTCCCAAAAAAATTGACTTTATAA TTTTAGAAAGTTGGATCTTGTAAATGTCTTCAATTCTCCCATAACCATTAACTTTTAGACACCCGTACAGCATAGTAGTC AATAGCGCCGCTATAGAGGCGTAGCGGAGCGGAGCGGCTCCCTGCCGCTATTGAAATAAAATAGCGGCGCACTTCAAAAT AGCGGCCGTAGCGGCGCAAATAGCGGCCAAAATAGTGGCAGATCGCGGCCAATAGCGGCGCTATATGGACGAACGGAAAA ATGACTCAAGCCCCTCGGTTTTAAATCGTTGGGGAACCTTTTTAGGGGCATTTTAGAACTTCTTAGGGCCATTTTAGGTC AAACTTGAAAGAATGAAGCTTCATTCTGATTTGCAAATCCGACTTCTTTACCTTGCTTTTGAGTGCTTTTTAGTTGTGTT ATTGTTCAAAACTTTGATTTTATTTCTATTATGAATATTATGAATTTTAGGCAATATTTGACATTGTTTTGTATTTATAT GTATATAGTATTAAACTATTAATTATATATAAAAAAATCTGAATAGCGGTCATCCCGCTATGCGCTATCCCACTTTTGGG GCCAGCCGCTACGCGCCGCTATCCGGGATTGACTACTATGCCGTACAGTCAGAGAAATAGATGTTCAGATGATAAGTTGC TAACTATGTTTGCATATTTTATTTGTAAATTGCAGTCCAGTGCAAGAAGTGGCAGATTCCTGCAGGACTGGAGCTGCAAC AAATGTGATTTTTGGATTGGCACTGGGATACAAATCAGTCATTATTCCCATATTTGCTATTGCTGTTGCTATTTATGTAA GCTTCAGTCTTGCCGCTATGTATGGAATTGCTGTTGCAGTCCTTGGAATGCTCAGTACCGTGGCTACTATTCTTATGGTC CCATTAGTGATAATACTGGAGGTATTGCAGGAATGGTTGGGATGAGACAGGAGATACGAGATTGAACAGATGCATTGGAT GCTGCAGGAAACACCACAGCCGCTATTGGCCTGGTCATTTGTTATCTAAAATATAGCGTTTCATTAACTAGCCAGAAAGA GTAGAAAACAAAAATATGGATTTTGATTCCCATTTCAATTACCATGCCCCTTTGACAAATTGTACTGGACTATAAATCTA GTAAAGTACCTTATTTTTAAAGTCACATCTGGGCTTGTATTGAAATCTGATATTGTTATGCCTTTCTAATAGGGTTTTTC CATTGGATCAGCTGCACTCGTGTTTCTTGCATTGTTTGGTGCTTATGTGAGCAGAGCAGGCATCAAAACAGTGAATGTGC TGACCCCAAAAGTTTTATTGGTTTGATTGTGGGAGCGATGCTTCCCTACTGGTTTTCAGCTATTGCAATGAAGAGTGTTG AGAGTGCAGCTCTCAAAATGGTGGAAGAAGTTCGAGGGCAATTCAATTCTATTCCCCCGGTCTTCTTGAAGGAAGAGCAA AACCAGATTATGCTACTTGTGTAAAGATTTCCACTGACGTCTGACGCCACTTAAGGAGACGATTGCACCTGTCGCACTAG TTTTGCTTACACCACTTGTTGCCGGAACATTCTTTGTTTTAGAGACTCTTTCTGGGGTTCTTGCTGGATTTCTTGTTTCT GGTGTGCAGGTATCCAGGCATTATATTTGTTAAATTCCAATTTGCAACATTTATGCTCTTTTTCACACATCAAGACTTTT CTCTATTTGCATTAGCCTTAATGTTAATATTCAATTTTGCTAAGATATTTTCATTTCTTAACAGGTGGCATTTTCTTCTT CTAATACTGGTGGGGCATTGGATAATGCCAAGAAGTAGAGAGGTAAAAATAAGAAATTATATGTCACCATTCAACTTTTG GTTTGATAGTGTTTTACAGATATAGAACTTGAAAATGAAGAATTCTATAAGGAACTTATTGCCTTTGTCCTTTTTATTCC TATAGGCTGGTGCTTCCACGCATGCTCTATCACTGGGTCCTAGACTCTCAGAAAGCAAAGCAGCTGTCGTAGGGGACGGA CACTGTTGGTGACCCTCTTAAGTCATAAGGACACTTCAGGTCCCTCACTCAACATTTTGATCAAGCTGATGACAGTTGAG TCATTGGTATTTGCTCCATTCTTTGCAGCTCATGGAGGCTTAATCTTTAAAATGCTCTCATTAGGAGCTGTTATTGTAAT CAACTGAACATTGTTGTCCATATTTTCAACATCTGGATGAACTGTGAGATTGATAGTGCTTGCTTTTAGGATAAGATTAA GTATGAAGAGCAAAAAAAATATGGTTTGCTTTGATTTGGTGACTACTTAATGCTAATAAATATTTGTGGGTTACATGTGA CATGTGGGAGTATAAAATCCCTGCCAGGATTTGATCTTCGAACCAAGTGGCTAAGTCACTTAATGTACATGGAACACTCT AGAATCATAAATAATTGTGACCCACTTGAACAAGCTTCTAATTTCAGCATCC
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0229200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCAAGTTCCCGCCAAGGCGAACAAACGCATTGCTCCGCCACCGTCACCGCCGAGAACTACCCGGTGCCGCTATCCCC TCCGCTTCCAGCAATCTCGAAGGAAATCGAGCTGAACAGAGCCACCATCGCCACATCAAACTCAGAGCTCTTCACTCTGT CAAGAACCGACCACATCATCTACGAAGACGACTCACTCATCGCCGTTAACAAACCCCAGGGAATTTACTGCGACGCCCTC CTTTCCTCCGTTACCACCATCACCACCGTGCCGGAGCTTCACCTCGCTAACCGCCTCGACCGTGACACCAGCGGCGTCAT GCTGATAACGAAGTCGCACAAGGTGGCTGCCAAGCTCGTCAAGGCCTTCACCGAGCACAGGGTGAAGAAAACATACATCG CGCTCTGCACCGGGCGTGCTCCCGATTGGGAAACGGTGACCGTCAGATCCGGTCACGGGAGGTCGAAATTCGGCGTGTGG CGAGTTTACGCCGCTTCCGACGTTGGCCGTGTACTGCCGGGTGGGTCGGTTGTTCGGGACATGGAAACTTCGTTCGAGGT GGTGTCTGTTAACGGGAAGAAGGGGAGGTTCAGGGAAGTTTCTGAGGCTGACATGGAGTTTCGAGAGGGGAGTGGGGTGG TGGTGGTTGAAGAAAAAGCGGTGAACGGTGACGGTGGTGGTGGTGGTGGTGAGGATGAGATAGTGGTGAGAGCGTATCCT AGGAGTGGAAGAACGCATCAGATTCGGTTGCACTGTCAGTATCTTGGGATTTCTATCAAAGGGGATGTGAAATATGAGGG TGTGTATGAGTGGAAAGGTGCTACTTATCATGCTCATCATCTTCATGCTGAGACATTGTCGTTTGAACACCCTGTCACTG GTCTTCGTGTTATGGTTCGTGCACCGCTTCCACCATGGGCTAACCTCGCGTTGCAGCCCGAATAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0229200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSSSRQGEQTHCSATVTAENYPVPLSPPLPAISKEIELNRATIATSNSELFTLSRTDHIIYEDDSLIAVNKPQGIYCDAL LSSVTTITTVPELHLANRLDRDTSGVMLITKSHKVAAKLVKAFTEHRVKKTYIALCTGRAPDWETVTVRSGHGRSKFGVW RVYAASDVGRVLPGGSVVRDMETSFEVVSVNGKKGRFREVSEADMEFREGSGVVVVEEKAVNGDGGGGGGEDEIVVRAYP RSGRTHQIRLHCQYLGISIKGDVKYEGVYEWKGATYHAHHLHAETLSFEHPVTGLRVMVRAPLPPWANLALQPE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21600
8 308 301 8.4E-101 –
PANTHER
PTHR21600:SF47
8 308 301 8.4E-101 –
SUPERFAMILY
SSF55120
57 308 252 6.88E-45
IPR020103
Pfam
PF00849
66 253 188 8.5E-22
IPR006145
CDD
cd02869
66 288 223 2.45159E-37
IPR006145
ProSitePatterns
PS01129
96 110 15 -
IPR006224

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0001522
Biological process Pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0009451
Biological process RNA modification The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
Subterm of
GO:0009982
Molecular function Pseudouridine synthase activity Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0229200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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