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LotjaGi5g1v0229200.2

Overview

Field Value
Gene ID LotjaGi5g1v0229200
Transcript ID LotjaGi5g1v0229200.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Pseudouridine synthase family protein; TAIR: AT1G56345.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q7XA65|PUS1_ARATH RNA pseudouridine synthase 1; TrEMBL-Plants: tr|A0A072VMN0|A0A072VMN0_MEDTR RNA pseudouridine synthase; Found in the gene: LotjaGi5g1v0229200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:53638684..53645475) extracted from Lotus japonicus Gifu genome v1.2.

CCCTTTTAGAGTCACGTGAGAAGCATGTGACTTGTCCAGTCATCAAGCAAAGTCACGTGAGACACGCGTGAGGGAGCCAC ATCAGCTTCTCACGTTAGTTTTCTCACGGAAGGCAAACGGCAGACCAAAAGTGCAACAACATGTATAGTTGGAGGACGTT TTTTGCTAATTTTGAAGTTTGGGAACGATTTTCGCAGGAAGGCAATAGTTGGGGGACCAAAAGTGCAATTAAGCCTAAAT ATTTTGATTCATGAGAAGCTGAGGAAAACGCATGGGTCCAACACTGAAGCAAGCGAGTTGGATCGGCCCGTGTACCCATC CATTTCAGAAACTCGCGGCACCCGTGTTCTCCGCCGCCGTAGCCATGTCAAGTTCCCGCCAAGGCGAACAAACGCATTGC TCCGCCACCGTCACCGCCGAGAACTACCCGGTGCCGCTATCCCCTCCGCTTCCAGCAATCTCGAAGGAAATCGAGCTGAA CAGAGCCACCATCGCCACATCAAACTCAGAGCTCTTCACTCTGTCAAGAACCGACCACATCATCTACGAAGACGACTCAC TCATCGCCGTTAACAAACCCCAGGGAATTTACTGCGACGCCCTCCTTTCCTCCGTTACCACCATCACCACCGTGCCGGAG CTTCACCTCGCTAACCGCCTCGACCGTGACACCAGCGGCGTCATGCTGATAACGAAGTCGCACAAGGTGGCTGCCAAGCT CGTCAAGGCCTTCACCGAGCACAGGGTGAAGAAAACATACATCGCGCTCTGCACCGGGCGTGCTCCCGATTGGGAAACGG TGACCGTCAGATCCGGTCACGGGAGGTCGAAATTCGGCGTGTGGCGAGTTTACGCCGCTTCCGACGTTGGCCGTGTACTG CCGGGTGGGTCGGTTGTTCGGGACATGGAAACTTCGTTCGAGGTGGTGTCTGTTAACGGGAAGAAGGGGAGGTTCAGGGA AGTTTCTGAGGCTGACATGGAGTTTCGAGAGGGGAGTGGGGTGGTGGTGGTTGAAGAAAAAGCGGTGAACGGTGACGGTG GTGGTGGTGGTGGTGAGGATGAGATAGTGGTGAGAGCGTATCCTAGGAGTGGAAGAACGCATCAGATTCGGTTGCACTGT CAGTATCTTGGGATTTCTATCAAAGGGGATGTGAAATATGAGGGTGTGTATGAGTGGAAAGGTGCTACTTATCATGCTCA TCATCTTCATGCTGAGACATTGTCGTTTGAACACCCTGTCACTGGTCTTCGTGTTATGGTTCGTGCACCGCTTCCACCAT GGGCTAACCTCGCGTTGCAGCCCGAATAACCATGGAGTTTGCATTTTCATGTGAGCTATGTCTGTTTCTCTGTGGATTGA TCTCAGCGTCTCATGCAATTTGCACTGAAGAAGGGGTCAGTATCTCATTCTTGCACTCACTATGAGTATTAGATTTGTTA CTTTGATCTGGGAGCTTAGGAATTGGCATGTTTTTGGGAATGGAGAGTCATAGAATCAAGAAGGACCTTTGAGCTGTGAT GTGATTTCATCTAGTCATGGTAGACCTGAGAAAATGTTGCCGCTATTTAGTAGATGATGATGGGCGGCGGAGAGATTTTG AGGTTCTTGCTAAATGATTTTTAGTCAACAATTTGTTATCTTTCATTCTGTCTTTGATTACACTGTACATGATAGTCAAC AATGAATGTCATTTATGTTTGATATTATTGTGAACAAATTTGAGAATTATTGCTACGGTAACATGGATTTCCAGGTGCTT CTGGAGAAGGTTTTTTTTCCATTTTGAAATGTGAATCACTATGATTATATCATAAGTAATGTGGTTGAAGTGAAAAATAG CAATGACACACTCAATAAGACTAATCTTGTAACTTGCAGATGTCTTCAATAATTTGTTTGGTTTGACATAACTTGAAATA CCTATCTTGGCAACATGCAGAACAAAAATATATATACTTCTAGATTTCCACCAGTCCAATGACTTTTCCCACTCTGTTTG ACTGTTTCTAGTTTTTTACAAGTATCTTAGAATTAAAAAGAGTTCACTGAAGTAATTCAATTTTGATTTGTCCCTTGAAA CTGAGCCATTGTTTCATAGCACATAAGGTTCTAGACAGGTTCAGAATGGCATGCTTTTGAATCTGATGACTTCATCTTAC GTATAAGATAAGAGCACTATTCTTATGTTATGCTGGTTCTGTTCATGCAACTAAGCAAGCTATCTTGATTTAATGAACAT ATCATGCTTCTTTTTTTAACCTTGTATAGAACTCTTAAGCATGTAATAATGGTATTTAAGTGAAAGTGATGCTTGTATTT GTACCCATGACCATGTTTTAATTAGAGAAGTTAAATTCTTTTAAACACAGCCCATTGAAAAACGATATATGAATGGAAAT GGATAAATCTGCCACCTGCTAATCTAAACGGCGAGTTTACTGATTCTATATCGGGATAATTCTGGTGAAGTCCAAATCTT TCGATCAAAGAACTGGTTTTGTAAAATCTGATTGCCATGCAAGCTCCCCTTGTTTTGCTCTGGTTTTCGGATGACAAACT TTCTAGATTGTCTATATGGCTATAGAACTCAGAGTTGAATTATACTATATTAGCTCAAGAAGTTCATTACAAATTTTCAA CTTTGGCACTTGGATATGGTGAGTTGAGCGAGTTTCTTACACAAATAGTTATACCTGTGTCTGCATTAATCGGAATTGGG TTTGCTTTGCTTCAATGGTATATGGTCTCGAGGGTCAGGGTCTCTGCTGTTGATCACACTGATGCTGACAACAGGTATAA AAGAAGTTTAATAGGAGATTCAGAGTTGTAGAATGGTGTTCAGGGTCCTGATGTTACCATTAGCTGTGCTGAAATTCAGC ATGCCATTTCTGTTGGTATGCTTTTGCCTCCTTCCCTCTCACAATTAACTATGGTGCCAGCAAATAAAAAATTGATCTTA TTTTGATATGTTCCCAGGAGCTACTTATTTTCTGTTTACTGAGTATAGATACCTGACTATCTTCATGGGAGTATTTGGTG CAATAATTTTCCTTTTCCTGGGCTCTGTGAAGGGCTTCAACACCAAAAGTCAATCTTGCACTTATAATGAAGGCAATCTT TGTAAACCAGCACTTGCTAATGCCTTCTTTAATATTGTTGCCTTCTTGCTTGGTGCTCTAACCTCTGTCCTTTCTGGATT TCTGCGGATGAAGTTTGCAACCTATGCCAAAGCTAGAACAACTCTTGAAGCAAGGAAAAAAATATGAAAAACATTTGTTA CTGCTTTTTGCTCTGGTGCAGTGATGGGCTTTCTTCTTGCTGAAATGGCCTGTTGCTGTTGGTGCTTAACGTCTCCATCA ATTTATTCAAACTGTATTGTGGAGATGAGCATGACTGGGAGGGGCTTTATGAGTCTATTATTGGCTACAGTTGGAGGGTC GTCAATGGCACTCTTTAGAAGAGTTGGAGGAGGTATATACACCAAAGCTGCTGATGTTGGTGCTGACCTTGTGGGGATAT CCTTGAAGGTGATCCACGCAACCCAGCTGTAAGTTCTTATATTCTTTTCTTATTGATCATCTCCATTCACCATCATAAAA TCCTATTTGTTGTAGAAGTTTTGGAGGCCTTTCATGGTTGATATGTTGTCATTCAAAGCATGCAATTTTCTCTATCTTCT ATTGAATGTTTCTTTTCTAGCTAAAGTCATCATTTTGTCGTTTTAAACCATAGTGAGTAAACGTGTATTTCTAGTTGCTA AATTTTGTGAATGTTAACAAGTTATTTGAGTCTTATGCAGAATCATCATGTGCGGCTTTATTTGTTGCATCCATATCATC ATTTGGATGAAATCATGACTATACAGCCATGTAATATCCTCTCATCATAAGCTCAATGGGAATTGTGGTTTGCTTGATTA CAATCCTTATTGGAACTCATCTGTTTGAAATACCCAAATAGAACCATACTTGCCATTGTCAACTTCTTTGCTCTGCCATC AGAATTTGCTCTCTATAACTTTGGAACCACTAAGGTTGTGAAGAACTGGTAAGCCTAATGTTCCACCAACCTTCCCTTTT TAGCAGCATGTATAGATTGTTTGGTCTTTATATGATTCAATTGTAAGTAAATCATATTATGACATAATCATAGGCACCTT TTTTTTGTATTGCCATTGGCTTATGGGCTGGACTTGTAATTGGGTACATTACTGAGTTCTACATGCTTACAGGTGAGCAG CCTCTCAGGGTTATACAACTTGCAATATTTCTTCTTGTCTCCTGGTCTGTTGCATGAAATCACTGTCCTTCAAATTTCCA GGGAGTCTAAAATTTCCCAAAAAAATTGACTTTATAATTTTAGAAAGTTGGATCTTGTAAATGTCTTCAATTCTCCCATA ACCATTAACTTTTAGACACCCGTACAGCATAGTAGTCAATAGCGCCGCTATAGAGGCGTAGCGGAGCGGAGCGGCTCCCT GCCGCTATTGAAATAAAATAGCGGCGCACTTCAAAATAGCGGCCGTAGCGGCGCAAATAGCGGCCAAAATAGTGGCAGAT CGCGGCCAATAGCGGCGCTATATGGACGAACGGAAAAATGACTCAAGCCCCTCGGTTTTAAATCGTTGGGGAACCTTTTT AGGGGCATTTTAGAACTTCTTAGGGCCATTTTAGGTCAAACTTGAAAGAATGAAGCTTCATTCTGATTTGCAAATCCGAC TTCTTTACCTTGCTTTTGAGTGCTTTTTAGTTGTGTTATTGTTCAAAACTTTGATTTTATTTCTATTATGAATATTATGA ATTTTAGGCAATATTTGACATTGTTTTGTATTTATATGTATATAGTATTAAACTATTAATTATATATAAAAAAATCTGAA TAGCGGTCATCCCGCTATGCGCTATCCCACTTTTGGGGCCAGCCGCTACGCGCCGCTATCCGGGATTGACTACTATGCCG TACAGTCAGAGAAATAGATGTTCAGATGATAAGTTGCTAACTATGTTTGCATATTTTATTTGTAAATTGCAGTCCAGTGC AAGAAGTGGCAGATTCCTGCAGGACTGGAGCTGCAACAAATGTGATTTTTGGATTGGCACTGGGATACAAATCAGTCATT ATTCCCATATTTGCTATTGCTGTTGCTATTTATGTAAGCTTCAGTCTTGCCGCTATGTATGGAATTGCTGTTGCAGTCCT TGGAATGCTCAGTACCGTGGCTACTATTCTTATGGTCCCATTAGTGATAATACTGGAGGTATTGCAGGAATGGTTGGGAT GAGACAGGAGATACGAGATTGAACAGATGCATTGGATGCTGCAGGAAACACCACAGCCGCTATTGGCCTGGTCATTTGTT ATCTAAAATATAGCGTTTCATTAACTAGCCAGAAAGAGTAGAAAACAAAAATATGGATTTTGATTCCCATTTCAATTACC ATGCCCCTTTGACAAATTGTACTGGACTATAAATCTAGTAAAGTACCTTATTTTTAAAGTCACATCTGGGCTTGTATTGA AATCTGATATTGTTATGCCTTTCTAATAGGGTTTTTCCATTGGATCAGCTGCACTCGTGTTTCTTGCATTGTTTGGTGCT TATGTGAGCAGAGCAGGCATCAAAACAGTGAATGTGCTGACCCCAAAAGTTTTATTGGTTTGATTGTGGGAGCGATGCTT CCCTACTGGTTTTCAGCTATTGCAATGAAGAGTGTTGAGAGTGCAGCTCTCAAAATGGTGGAAGAAGTTCGAGGGCAATT CAATTCTATTCCCCCGGTCTTCTTGAAGGAAGAGCAAAACCAGATTATGCTACTTGTGTAAAGATTTCCACTGACGTCTG ACGCCACTTAAGGAGACGATTGCACCTGTCGCACTAGTTTTGCTTACACCACTTGTTGCCGGAACATTCTTTGTTTTAGA GACTCTTTCTGGGGTTCTTGCTGGATTTCTTGTTTCTGGTGTGCAGGTATCCAGGCATTATATTTGTTAAATTCCAATTT GCAACATTTATGCTCTTTTTCACACATCAAGACTTTTCTCTATTTGCATTAGCCTTAATGTTAATATTCAATTTTGCTAA GATATTTTCATTTCTTAACAGGTGGCATTTTCTTCTTCTAATACTGGTGGGGCATTGGATAATGCCAAGAAGTAGAGAGG TAAAAATAAGAAATTATATGTCACCATTCAACTTTTGGTTTGATAGTGTTTTACAGATATAGAACTTGAAAATGAAGAAT TCTATAAGGAACTTATTGCCTTTGTCCTTTTTATTCCTATAGGCTGGTGCTTCCACGCATGCTCTATCACTGGGTCCTAG ACTCTCAGAAAGCAAAGCAGCTGTCGTAGGGGACGGACACTGTTGGTGACCCTCTTAAGTCATAAGGACACTTCAGGTCC CTCACTCAACATTTTGATCAAGCTGATGACAGTTGAGTCATTGGTATTTGCTCCATTCTTTGCAGCTCATGGAGGCTTAA TCTTTAAAATGCTCTCATTAGGAGCTGTTATTGTAATCAACTGAACATTGTTGTCCATATTTTCAACATCTGGATGAACT GTGAGATTGATAGTGCTTGCTTTTAGGATAAGATTAAGTATGAAGAGCAAAAAAAATATGGTTTGCTTTGATTTGGTGAC TACTTAATGCTAATAAATATTTGTGGGTTACATGTGACATGTGGGAGTATAAAATCCCTGCCAGGATTTGATCTTCGAAC CAAGTGGCTAAGTCACTTAATGTACATGGAACACTCTAGAATCATAAATAATTGTGACCCACTTGAACAAGC
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0229200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTCCAACACTGAAGCAAGCGAGTTGGATCGGCCCGTGTACCCATCCATTTCAGAAACTCGCGGCACCCGTGTTCTC CGCCGCCGTAGCCATGTCAAGTTCCCGCCAAGGCGAACAAACGCATTGCTCCGCCACCGTCACCGCCGAGAACTACCCGG TGCCGCTATCCCCTCCGCTTCCAGCAATCTCGAAGGAAATCGAGCTGAACAGAGCCACCATCGCCACATCAAACTCAGAG CTCTTCACTCTGTCAAGAACCGACCACATCATCTACGAAGACGACTCACTCATCGCCGTTAACAAACCCCAGGGAATTTA CTGCGACGCCCTCCTTTCCTCCGTTACCACCATCACCACCGTGCCGGAGCTTCACCTCGCTAACCGCCTCGACCGTGACA CCAGCGGCGTCATGCTGATAACGAAGTCGCACAAGGTGGCTGCCAAGCTCGTCAAGGCCTTCACCGAGCACAGGGTGAAG AAAACATACATCGCGCTCTGCACCGGGCGTGCTCCCGATTGGGAAACGGTGACCGTCAGATCCGGTCACGGGAGGTCGAA ATTCGGCGTGTGGCGAGTTTACGCCGCTTCCGACGTTGGCCGTGTACTGCCGGGTGGGTCGGTTGTTCGGGACATGGAAA CTTCGTTCGAGGTGGTGTCTGTTAACGGGAAGAAGGGGAGGTTCAGGGAAGTTTCTGAGGCTGACATGGAGTTTCGAGAG GGGAGTGGGGTGGTGGTGGTTGAAGAAAAAGCGGTGAACGGTGACGGTGGTGGTGGTGGTGGTGAGGATGAGATAGTGGT GAGAGCGTATCCTAGGAGTGGAAGAACGCATCAGATTCGGTTGCACTGTCAGTATCTTGGGATTTCTATCAAAGGGGATG TGAAATATGAGGGTGTGTATGAGTGGAAAGGTGCTACTTATCATGCTCATCATCTTCATGCTGAGACATTGTCGTTTGAA CACCCTGTCACTGGTCTTCGTGTTATGGTTCGTGCACCGCTTCCACCATGGGCTAACCTCGCGTTGCAGCCCGAATAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0229200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGPTLKQASWIGPCTHPFQKLAAPVFSAAVAMSSSRQGEQTHCSATVTAENYPVPLSPPLPAISKEIELNRATIATSNSE LFTLSRTDHIIYEDDSLIAVNKPQGIYCDALLSSVTTITTVPELHLANRLDRDTSGVMLITKSHKVAAKLVKAFTEHRVK KTYIALCTGRAPDWETVTVRSGHGRSKFGVWRVYAASDVGRVLPGGSVVRDMETSFEVVSVNGKKGRFREVSEADMEFRE GSGVVVVEEKAVNGDGGGGGGEDEIVVRAYPRSGRTHQIRLHCQYLGISIKGDVKYEGVYEWKGATYHAHHLHAETLSFE HPVTGLRVMVRAPLPPWANLALQPE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21600:SF47
37 339 303 5.2E-101 –
PANTHER
PTHR21600
37 339 303 5.2E-101 –
SUPERFAMILY
SSF55120
88 339 252 9.28E-45
IPR020103
Pfam
PF00849
97 284 188 1.1E-21
IPR006145
CDD
cd02869
97 319 223 2.04332E-37
IPR006145
ProSitePatterns
PS01129
127 141 15 -
IPR006224

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0001522
Biological process Pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0009451
Biological process RNA modification The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
Subterm of
GO:0009982
Molecular function Pseudouridine synthase activity Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0229200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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