Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi5g1v0231100 |
Transcript ID | LotjaGi5g1v0231100.1 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Kelch repeat protein, putative; TAIR: AT1G18610.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q5EA50|RABEK_BOVIN Rab9 effector protein with kelch motifs; TrEMBL-Plants: tr|K7LJG6|K7LJG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0231100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53839586..53844491) extracted from Lotus japonicus Gifu genome v1.2.
GCTTAATTAATATGGAGGTAGAGGGAAAAAATAATGGTTGTTTTCACAACAACCATCTGTTGCTGTTGGTTGCCAGTGAT TTGGACATGAAAGCGCCCATCTTTTCATGTCTATTGATATTGATAGTTGATACATCACTTGGCTTGTTGATGTCTTCTTT TGACTCTCTCTTTCTCTTTCTCTACTACTACTACTTCACCCTCTTACTTGTTTATTCATCATCGTTGTCAAGCACTGTAT TGAAGTATTAAACACATAGCAGAGAGAGAAAAACACAGATAGAGAAACATAAATGGGGTCTTTGGTTGCTGAAACAGAGA AGAAGAAGAAAGCAATGTGGTTGTATCCTAAGGTTTTGGGTTTTAATCCTTCTGAAAGATGGGGACACTCTGCTTGCTTC TCTGGGGGGCTTATGTATGTCTTCGGGGTATGAATGAAATCTTTCTTACTCATTCAAAAATGCATAAAAGATCATTTTCT TACAAGTTCTAGTTAATGGGGTGTTCTTATTAATGGTGTCTGAACTTTCTCATATGTTTTACTCCTTTGGAGCTTGTTAA AGGGTTGTGCTTATTAATGGTGTCTGCACTTTCTCATAATTTTTGCTTCTTTGAAGCTCTGGTGTCTCCTGACTTAATCA CAGAATTTTCATTCTTGTGATGTGTTCAATTATTTCATAAGCTCCTAGTACAACTTTCTTAACTTCCCTTGCTTTCTAGC TATCTTTGGTTAACGACCAAACCACTTTCTTCTCTGAATTTTAGTTTTTTCCTAATTTCTCTCAACACACATATTTCTTG AAGACACTTAACTGATTCATTTTTCTTTCTCTAAATAGTGGGACAATACGTGTTTCTTTTATGATCATAAATTTTGCTTT CTTAATATAGCAATGTTCACCATTTTGGTTCTTCTCTGTTAACAACCAGTGCTTTCATTTCTTTGTAATCTGAGAAGTGA GAATCTCTATCTTAGTTATCACTTAATTAGCTCTCTATTCACCTTTTTATCTGATGATGAAAAGTTTAATTATTGCTAAA ACTCTCATATTACCTTGCTAAGCAAAATTATCATTAAACAAAATAACTCAATTTTTCTGTTGAGAGAAACTCTTATGTGA CAACAAGATGGTGATAGTAGTTGTTGAATAGCTACAAAGAAAGGCATGAACATAAGTCTCATTTCCTTTCTTTGTTGGAT TGCTTCAAATTCTACACATGTGAGCAAGTTTCTTCCTTTGATTTTGTTCTCTCCAAAATACTTACAGGGATTAAACCGAA CTCAGACCAGGTGCCTTTATCTCTCGATTTAGTCCCTGGAATTATGGAGAGAACAGGTTCCATTGCCTTAAAAGCTAGTG AACATTTTTGAGATTTTTTTTTAGTTTTTTACTAATTATGATTCACAATCTTGACTTTTCAGGGCTGTTGTGGGGGGCTA CATTTCAGTGATGTTCTGACTTTAGACCTTGAGAGAATGCAATGGAGCAAGCTTGCTACCACTGGTGAAAAGCCAGGCCC AAGAGATAGCCACAGTGCTGTTCTTGTGGGCCATAAAATGATAGTTTTTGGTGGCACAAATGGGTTCAGGAAGGTGAATG ACACTCACATACTAGATCTTGTCACCAAAGAGTGGATTCATCTTAAATGTGAAGGGACTCCACCTTCTCCAAGGGAGAGT CACACTGCCACTCTTGTTGGTGATGAAAGGCTAGTGATTTTCGGTGGAAGTGGAGAAGGTGAAGCAAACTATTTAAATGA CTTGCATGTTCTGGACCTTGGAACCATGAGGTGGAGCTCTCCTGAGGTTAAAGGTGATTTTCCTGTCCCTAGAGACAGTC ACATTGCTCTTGCAATTGGTGACAAGGTTGTTGTGTATGGCGGAGACTCTGGTGATATGTACCATGGTGATGTTAGCATG CTTGATATGGAAACAATGACTTGGTCAAGGGTATGGTATCCTTTTTTTGTAGTTTTGTTGATGTGGAATTGAATGATTAA AGATAATGTTTTCAAACTACATGGAGCTTAATAGTGTTGTTTCATTTTGTTTTTTTCATTTAAAATGACAGTTGAAAGTT CAAGGCTCTTCCCCAGGAGTCAGGGCAGGTCATGCAGCAGTAAATATTGGAAACAAGGTGAGTTTTCTTAGTTTGTATAT AACATCAGACTAATAAAGCAGCTAACATATACTTTATGAAATGAAAATTGTGCATATTGTTTTTAATTACCTCAGAAATC AGCAATAATATTCATTTCTCCTATCACTTGTGAATGATATCCATTTTCATCAGCACTTACTTATTGCTTTTGGATAAAAT TGATTTTGGTAAAATTAATTATGGTAAAAGTGTGTTGAAAGTGAAAATGATTTATGTTTTACATTTACGAGAAAAGTGAT TTTTGTAGGGTAATATTGTGAAATCCGATTGCCAAATCTCACAATTGATTATATTCAACGTAAAAGTTACTTTCTATAGC TGCTACGCAGATTCGATTGTGTAACTGAAATCAATTCTCAAATATATATATTTTCACCCAAAACTGATTGTACTCAATGA CAATTGAGTTTGAGGTCCTGGACGGGGAACCAAACACACACTCAATACTATATGGTACTATTTTGAACTTATCAGCTAAG TAGATCAATTCTTCATAATTTACAGCTCTACATCATTGGAGGGGTTGGAGATAAATGTTATTGCAATGACATATGGGTCT TTGATATCTTCACTTGTTCATGGACTCAACTTGTTATACCTGGTCAACAACCGCAGGGGCGGTTTTCTCACACAGCTGTT GTTACGGACATGGATATTGCTATATATGGCGGGTAGGTTCCCATCAAATTAGTCGACTATTGGTGATGAAATAGGATGAA TTGAGACAGCATTTTGTAAATACCGAATTATCTTGAATATATTCACTATCTTTGGACAAATGACATTATGATAAATTAAT CCTATTTCGTTTTCTATTTCTTTCAGCATACAAGTTTTTCATTTTCATTCTGATAGCTTGCGTTTGTCTTATAGCAGGTG TGGGGAAGATGAACGTCCTTTGAATGAATTGTTAGTATTGCAGCTTGGAGCAGAGTTTCCAAATGGACGTTACAACATTT CCGGGTGTAAAGTTTTTGGAACTTATTGGAATCAAGAAAAGAGAACCACACCAGGAGAAGCTGATATAAACTCGGTACAA AAGTTCATGTAGCTAGCAATGTTGTTAGTTGTTAAAACTTATAAGTACTTGCCCATGTTATAGTTGATTAAAGAAAAACA ACTAAAGATGTTTTTTTTTACCAGAAAATTCCACACATGGGGAATAATGTGGAAGTGTTTGGAAAATGGGGTTCTGAAGT TGCATCCGAAAGAGCACTACCTTATCAATTTAATTCAGGTGAGTTAGAGTTAAGAGTGTTTACCATCTGAAAAAGGATTC TCAACTTGGTTGATTGAAAATTGTAACTTTAATTATGCAGGAACTTATCAACAAAAGAGGCGGAAAATTGCTCCTGTGAA GGTGTGGGATGTTGAATCAGAACAAGAAGAACATTCTCTTTCACTCTCTCAACATTCATCTCCATCTCAATCTGATCAAG AACAGACACAAGCTCAAAAGGCCAATGCTTCTGCCATGGATTCTCATCGCGTAAAACTGATCCACAAAATTCCAAGCAAT TGGCAGCATGGGAGTGTCTCAAGCTATAAGAGAGTTTTGAAGAACGTCGCGCGAAGAAGTCCACAAGATCTTCATCACCT GGAATATCAACCAACACAAGAACGCTATCTTCATGTTGATGATGATATAAACCGAGGTCGTCACCAAGCGGCAGAACACA AGCCAATGGCGCGAGGATACGCTCAACAACTGGTAGTCGATCGATTGCTTTCTCAAATCTCAAATTTCTGCTTCGCAAAA CATCTTGCTCAAACTATTTTTTGTGTCTTCGTATAAAAAACAGTAGTGAATTAAGTAAGTCCTTATTCTTTCGTGCTCTC TTGATTTTGAATCCTAGGTTGGAGCTGAAGTTCGAGGGAAAGTAGACGGCGCCTTTGATTCGGGTTTGCTGATGACAGCA ACTGTGAATGGAAGAGTTTTCAGAGGAGTGTTGTTTGCACCAGTAGTAAGCTTTTGAACTTTGCTTTTATAACATGTTAC ATTTTGATTGTTGTAGAAATTAGCAAAGTATGAAGTTAATTTCATTGATAAGCATGTTGATCACCAATAACTGAATGAAA GTTATCAATAACGGAATAGAAATTAACAACTAAGCAACTGATCCTCTAATCTCTAACTAAAATACGTACAGCTAACAATT GTAGTGCAAGTGCATTAACCATTTTTTGGTAACAAATTTATCAGGGTGCAGGAGTAAGCTCCACCAGTGTTGAGCCAAAT TGTTCTTTACCATGTTTATTTCCCTCCTCCACTCAACCATTGATGAACTCAAATCATGTGGAGAATTTGAGGGGTTTGCG GCAACCGCTACTGGCTCGGCCATCTCCAATCATGAGAGGCTCTGCTGCACCTTTAGCAAATGAACGCAAAGTGAGGAGTG ACCTTCAAGGGTTGGTTTTGACACTTGGAGGACCTGCTGCAAGTGGCAACCATGCTTGATCATTAGGTGAATTGTTGAGG AGGCTAATAAGGTTTATGTAAATTTTAGAAATAAATCATGTGCACTTGAATGGTTATGCTTTTCTAGGATCCATCATAAT ATTTGGTTTTAACTGTTCTGGAATAAGACTTGTTCGCCTACCATAAGCCCATAACAATAGTAACATAATCGTGTTTGGAA ATCTTTTTGCAATTGATTCTAATGTCCGAATTAATTCTATGGAGAAGTTTCTTAAGTGGTTTCAGGGTGCCACAATTAAA ATTGGTCATGAGAAACTAATACAAAT
CDS sequence (LotjaGi5g1v0231100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATGGAGCAAGCTTGCTACCACTGGTGAAAAGCCAGGCCCAAGAGATAGCCACAGTGCTGTTCTTGTGGGCCATAA AATGATAGTTTTTGGTGGCACAAATGGGTTCAGGAAGGTGAATGACACTCACATACTAGATCTTGTCACCAAAGAGTGGA TTCATCTTAAATGTGAAGGGACTCCACCTTCTCCAAGGGAGAGTCACACTGCCACTCTTGTTGGTGATGAAAGGCTAGTG ATTTTCGGTGGAAGTGGAGAAGGTGAAGCAAACTATTTAAATGACTTGCATGTTCTGGACCTTGGAACCATGAGGTGGAG CTCTCCTGAGGTTAAAGGTGATTTTCCTGTCCCTAGAGACAGTCACATTGCTCTTGCAATTGGTGACAAGGTTGTTGTGT ATGGCGGAGACTCTGGTGATATGTACCATGGTGATGTTAGCATGCTTGATATGGAAACAATGACTTGGTCAAGGTTGAAA GTTCAAGGCTCTTCCCCAGGAGTCAGGGCAGGTCATGCAGCAGTAAATATTGGAAACAAGCTCTACATCATTGGAGGGGT TGGAGATAAATGTTATTGCAATGACATATGGGTCTTTGATATCTTCACTTGTTCATGGACTCAACTTGTTATACCTGGTC AACAACCGCAGGGGCGGTTTTCTCACACAGCTGTTGTTACGGACATGGATATTGCTATATATGGCGGGTGTGGGGAAGAT GAACGTCCTTTGAATGAATTGTTAGTATTGCAGCTTGGAGCAGAGTTTCCAAATGGACGTTACAACATTTCCGGGTGTAA AGTTTTTGGAACTTATTGGAATCAAGAAAAGAGAACCACACCAGGAGAAGCTGATATAAACTCGAAAATTCCACACATGG GGAATAATGTGGAAGTGTTTGGAAAATGGGGTTCTGAAGTTGCATCCGAAAGAGCACTACCTTATCAATTTAATTCAGGA ACTTATCAACAAAAGAGGCGGAAAATTGCTCCTGTGAAGGTGTGGGATGTTGAATCAGAACAAGAAGAACATTCTCTTTC ACTCTCTCAACATTCATCTCCATCTCAATCTGATCAAGAACAGACACAAGCTCAAAAGGCCAATGCTTCTGCCATGGATT CTCATCGCGTAAAACTGATCCACAAAATTCCAAGCAATTGGCAGCATGGGAGTGTCTCAAGCTATAAGAGAGTTTTGAAG AACGTCGCGCGAAGAAGTCCACAAGATCTTCATCACCTGGAATATCAACCAACACAAGAACGCTATCTTCATGTTGATGA TGATATAAACCGAGGTCGTCACCAAGCGGCAGAACACAAGCCAATGGCGCGAGGATACGCTCAACAACTGGTTGGAGCTG AAGTTCGAGGGAAAGTAGACGGCGCCTTTGATTCGGGTTTGCTGATGACAGCAACTGTGAATGGAAGAGTTTTCAGAGGA GTGTTGTTTGCACCAGTAGGTGCAGGAGTAAGCTCCACCAGTGTTGAGCCAAATTGTTCTTTACCATGTTTATTTCCCTC CTCCACTCAACCATTGATGAACTCAAATCATGTGGAGAATTTGAGGGGTTTGCGGCAACCGCTACTGGCTCGGCCATCTC CAATCATGAGAGGCTCTGCTGCACCTTTAGCAAATGAACGCAAAGTGAGGAGTGACCTTCAAGGGTTGGTTTTGACACTT GGAGGACCTGCTGCAAGTGGCAACCATGCTTGA
Protein sequence (LotjaGi5g1v0231100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQWSKLATTGEKPGPRDSHSAVLVGHKMIVFGGTNGFRKVNDTHILDLVTKEWIHLKCEGTPPSPRESHTATLVGDERLV IFGGSGEGEANYLNDLHVLDLGTMRWSSPEVKGDFPVPRDSHIALAIGDKVVVYGGDSGDMYHGDVSMLDMETMTWSRLK VQGSSPGVRAGHAAVNIGNKLYIIGGVGDKCYCNDIWVFDIFTCSWTQLVIPGQQPQGRFSHTAVVTDMDIAIYGGCGED ERPLNELLVLQLGAEFPNGRYNISGCKVFGTYWNQEKRTTPGEADINSKIPHMGNNVEVFGKWGSEVASERALPYQFNSG TYQQKRRKIAPVKVWDVESEQEEHSLSLSQHSSPSQSDQEQTQAQKANASAMDSHRVKLIHKIPSNWQHGSVSSYKRVLK NVARRSPQDLHHLEYQPTQERYLHVDDDINRGRHQAAEHKPMARGYAQQLVGAEVRGKVDGAFDSGLLMTATVNGRVFRG VLFAPVGAGVSSTSVEPNCSLPCLFPSSTQPLMNSNHVENLRGLRQPLLARPSPIMRGSAAPLANERKVRSDLQGLVLTL GGPAASGNHA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 110 | 110 | 1.2E-18 | ||
SUPERFAMILY | 2 | 253 | 252 | 7.59E-59 | ||
PANTHER | 2 | 138 | 137 | 7.0E-69 | – | |
Pfam | 15 | 56 | 42 | 9.4E-6 | – | |
Pfam | 65 | 107 | 43 | 1.1E-7 | – | |
Gene3D | 111 | 280 | 170 | 3.3E-23 | ||
PANTHER | 111 | 252 | 142 | 7.0E-69 | – | |
SMART | 130 | 179 | 50 | 0.13 | ||
Pfam | 169 | 216 | 48 | 7.5E-9 | – | |
SMART | 180 | 229 | 50 | 1.2 | ||
Pfam | 218 | 251 | 34 | 4.6E-4 | – | |
MobiDBLite | 341 | 372 | 32 | - | – | |
MobiDBLite | 346 | 370 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0231100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…