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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0231100 |
| Transcript ID | LotjaGi5g1v0231100.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kelch repeat protein, putative; TAIR: AT1G74150.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q5EA50|RABEK_BOVIN Rab9 effector protein with kelch motifs; TrEMBL-Plants: tr|K7LJG6|K7LJG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0231100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53839586..53844726) extracted from Lotus japonicus Gifu genome v1.2.
CTTAATGTTCTTGAAGCTTATCCAACCAAGCAGCGCATGAATGTTTCTACTTTCTACTATAAGTCTATAACATAGTAACA TGATAACATTAGTGTCTGAATATGTTTATACTGTGTATTATGAATATGAATATGCTGGTTTAATTATGTCAATATTTAGA ATATGCACTCTGCATTTATTCAGTATATTATTATTCCATATATATATGCAACTAATGAAAAGAAAATTGAATAATGCTTA ATTAATATGGAGGTAGAGGGAAAAAATAATGGTTGTTTTCACAACAACCATCTGTTGCTGTTGGTTGCCAGTGATTTGGA CATGAAAGCGCCCATCTTTTCATGTCTATTGATATTGATAGTTGATACATCACTTGGCTTGTTGATGTCTTCTTTTGACT CTCTCTTTCTCTTTCTCTACTACTACTACTTCACCCTCTTACTTGTTTATTCATCATCGTTGTCAAGCACTGTATTGAAG TATTAAACACATAGCAGAGAGAGAAAAACACAGATAGAGAAACATAAATGGGGTCTTTGGTTGCTGAAACAGAGAAGAAG AAGAAAGCAATGTGGTTGTATCCTAAGGTTTTGGGTTTTAATCCTTCTGAAAGATGGGGACACTCTGCTTGCTTCTCTGG GGGGCTTATGTATGTCTTCGGGGTATGAATGAAATCTTTCTTACTCATTCAAAAATGCATAAAAGATCATTTTCTTACAA GTTCTAGTTAATGGGGTGTTCTTATTAATGGTGTCTGAACTTTCTCATATGTTTTACTCCTTTGGAGCTTGTTAAAGGGT TGTGCTTATTAATGGTGTCTGCACTTTCTCATAATTTTTGCTTCTTTGAAGCTCTGGTGTCTCCTGACTTAATCACAGAA TTTTCATTCTTGTGATGTGTTCAATTATTTCATAAGCTCCTAGTACAACTTTCTTAACTTCCCTTGCTTTCTAGCTATCT TTGGTTAACGACCAAACCACTTTCTTCTCTGAATTTTAGTTTTTTCCTAATTTCTCTCAACACACATATTTCTTGAAGAC ACTTAACTGATTCATTTTTCTTTCTCTAAATAGTGGGACAATACGTGTTTCTTTTATGATCATAAATTTTGCTTTCTTAA TATAGCAATGTTCACCATTTTGGTTCTTCTCTGTTAACAACCAGTGCTTTCATTTCTTTGTAATCTGAGAAGTGAGAATC TCTATCTTAGTTATCACTTAATTAGCTCTCTATTCACCTTTTTATCTGATGATGAAAAGTTTAATTATTGCTAAAACTCT CATATTACCTTGCTAAGCAAAATTATCATTAAACAAAATAACTCAATTTTTCTGTTGAGAGAAACTCTTATGTGACAACA AGATGGTGATAGTAGTTGTTGAATAGCTACAAAGAAAGGCATGAACATAAGTCTCATTTCCTTTCTTTGTTGGATTGCTT CAAATTCTACACATGTGAGCAAGTTTCTTCCTTTGATTTTGTTCTCTCCAAAATACTTACAGGGATTAAACCGAACTCAG ACCAGGTGCCTTTATCTCTCGATTTAGTCCCTGGAATTATGGAGAGAACAGGTTCCATTGCCTTAAAAGCTAGTGAACAT TTTTGAGATTTTTTTTTAGTTTTTTACTAATTATGATTCACAATCTTGACTTTTCAGGGCTGTTGTGGGGGGCTACATTT CAGTGATGTTCTGACTTTAGACCTTGAGAGAATGCAATGGAGCAAGCTTGCTACCACTGGTGAAAAGCCAGGCCCAAGAG ATAGCCACAGTGCTGTTCTTGTGGGCCATAAAATGATAGTTTTTGGTGGCACAAATGGGTTCAGGAAGGTGAATGACACT CACATACTAGATCTTGTCACCAAAGAGTGGATTCATCTTAAATGTGAAGGGACTCCACCTTCTCCAAGGGAGAGTCACAC TGCCACTCTTGTTGGTGATGAAAGGCTAGTGATTTTCGGTGGAAGTGGAGAAGGTGAAGCAAACTATTTAAATGACTTGC ATGTTCTGGACCTTGGAACCATGAGGTGGAGCTCTCCTGAGGTTAAAGGTGATTTTCCTGTCCCTAGAGACAGTCACATT GCTCTTGCAATTGGTGACAAGGTTGTTGTGTATGGCGGAGACTCTGGTGATATGTACCATGGTGATGTTAGCATGCTTGA TATGGAAACAATGACTTGGTCAAGGGTATGGTATCCTTTTTTTGTAGTTTTGTTGATGTGGAATTGAATGATTAAAGATA ATGTTTTCAAACTACATGGAGCTTAATAGTGTTGTTTCATTTTGTTTTTTTCATTTAAAATGACAGTTGAAAGTTCAAGG CTCTTCCCCAGGAGTCAGGGCAGGTCATGCAGCAGTAAATATTGGAAACAAGGTGAGTTTTCTTAGTTTGTATATAACAT CAGACTAATAAAGCAGCTAACATATACTTTATGAAATGAAAATTGTGCATATTGTTTTTAATTACCTCAGAAATCAGCAA TAATATTCATTTCTCCTATCACTTGTGAATGATATCCATTTTCATCAGCACTTACTTATTGCTTTTGGATAAAATTGATT TTGGTAAAATTAATTATGGTAAAAGTGTGTTGAAAGTGAAAATGATTTATGTTTTACATTTACGAGAAAAGTGATTTTTG TAGGGTAATATTGTGAAATCCGATTGCCAAATCTCACAATTGATTATATTCAACGTAAAAGTTACTTTCTATAGCTGCTA CGCAGATTCGATTGTGTAACTGAAATCAATTCTCAAATATATATATTTTCACCCAAAACTGATTGTACTCAATGACAATT GAGTTTGAGGTCCTGGACGGGGAACCAAACACACACTCAATACTATATGGTACTATTTTGAACTTATCAGCTAAGTAGAT CAATTCTTCATAATTTACAGCTCTACATCATTGGAGGGGTTGGAGATAAATGTTATTGCAATGACATATGGGTCTTTGAT ATCTTCACTTGTTCATGGACTCAACTTGTTATACCTGGTCAACAACCGCAGGGGCGGTTTTCTCACACAGCTGTTGTTAC GGACATGGATATTGCTATATATGGCGGGTAGGTTCCCATCAAATTAGTCGACTATTGGTGATGAAATAGGATGAATTGAG ACAGCATTTTGTAAATACCGAATTATCTTGAATATATTCACTATCTTTGGACAAATGACATTATGATAAATTAATCCTAT TTCGTTTTCTATTTCTTTCAGCATACAAGTTTTTCATTTTCATTCTGATAGCTTGCGTTTGTCTTATAGCAGGTGTGGGG AAGATGAACGTCCTTTGAATGAATTGTTAGTATTGCAGCTTGGAGCAGAGTTTCCAAATGGACGTTACAACATTTCCGGG TGTAAAGTTTTTGGAACTTATTGGAATCAAGAAAAGAGAACCACACCAGGAGAAGCTGATATAAACTCGGTACAAAAGTT CATGTAGCTAGCAATGTTGTTAGTTGTTAAAACTTATAAGTACTTGCCCATGTTATAGTTGATTAAAGAAAAACAACTAA AGATGTTTTTTTTTACCAGAAAATTCCACACATGGGGAATAATGTGGAAGTGTTTGGAAAATGGGGTTCTGAAGTTGCAT CCGAAAGAGCACTACCTTATCAATTTAATTCAGGTGAGTTAGAGTTAAGAGTGTTTACCATCTGAAAAAGGATTCTCAAC TTGGTTGATTGAAAATTGTAACTTTAATTATGCAGGAACTTATCAACAAAAGAGGCGGAAAATTGCTCCTGTGAAGGTGT GGGATGTTGAATCAGAACAAGAAGAACATTCTCTTTCACTCTCTCAACATTCATCTCCATCTCAATCTGATCAAGAACAG ACACAAGCTCAAAAGGCCAATGCTTCTGCCATGGATTCTCATCGCGTAAAACTGATCCACAAAATTCCAAGCAATTGGCA GCATGGGAGTGTCTCAAGCTATAAGAGAGTTTTGAAGAACGTCGCGCGAAGAAGTCCACAAGATCTTCATCACCTGGAAT ATCAACCAACACAAGAACGCTATCTTCATGTTGATGATGATATAAACCGAGGTCGTCACCAAGCGGCAGAACACAAGCCA ATGGCGCGAGGATACGCTCAACAACTGGTAGTCGATCGATTGCTTTCTCAAATCTCAAATTTCTGCTTCGCAAAACATCT TGCTCAAACTATTTTTTGTGTCTTCGTATAAAAAACAGTAGTGAATTAAGTAAGTCCTTATTCTTTCGTGCTCTCTTGAT TTTGAATCCTAGGTTGGAGCTGAAGTTCGAGGGAAAGTAGACGGCGCCTTTGATTCGGGTTTGCTGATGACAGCAACTGT GAATGGAAGAGTTTTCAGAGGAGTGTTGTTTGCACCAGTAGTAAGCTTTTGAACTTTGCTTTTATAACATGTTACATTTT GATTGTTGTAGAAATTAGCAAAGTATGAAGTTAATTTCATTGATAAGCATGTTGATCACCAATAACTGAATGAAAGTTAT CAATAACGGAATAGAAATTAACAACTAAGCAACTGATCCTCTAATCTCTAACTAAAATACGTACAGCTAACAATTGTAGT GCAAGTGCATTAACCATTTTTTGGTAACAAATTTATCAGGGTGCAGGAGTAAGCTCCACCAGTGTTGAGCCAAATTGTTC TTTACCATGTTTATTTCCCTCCTCCACTCAACCATTGATGAACTCAAATCATGTGGAGAATTTGAGGGGTTTGCGGCAAC CGCTACTGGCTCGGCCATCTCCAATCATGAGAGGCTCTGCTGCACCTTTAGCAAATGAACGCAAAGTGAGGAGTGACCTT CAAGGGTTGGTTTTGACACTTGGAGGACCTGCTGCAAGTGGCAACCATGCTTGATCATTAGGTGAATTGTTGAGGAGGCT AATAAGGTTTATGTAAATTTTAGAAATAAATCATGTGCACTTGAATGGTTATGCTTTTCTAGGATCCATCATAATATTTG GTTTTAACTGTTCTGGAATAAGACTTGTTCGCCTACCATAAGCCCATAACAATAGTAACATAATCGTGTTTGGAAATCTT TTTGCAATTGATTCTAATGTCCGAATTAATTCTATGGAGAAGTTTCTTAAGTGGTTTCAGGGTGCCACAATTAAAATTGG TCATGAGAAACTAATACAAAT
CDS sequence (LotjaGi5g1v0231100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATGGAGCAAGCTTGCTACCACTGGTGAAAAGCCAGGCCCAAGAGATAGCCACAGTGCTGTTCTTGTGGGCCATAA AATGATAGTTTTTGGTGGCACAAATGGGTTCAGGAAGGTGAATGACACTCACATACTAGATCTTGTCACCAAAGAGTGGA TTCATCTTAAATGTGAAGGGACTCCACCTTCTCCAAGGGAGAGTCACACTGCCACTCTTGTTGGTGATGAAAGGCTAGTG ATTTTCGGTGGAAGTGGAGAAGGTGAAGCAAACTATTTAAATGACTTGCATGTTCTGGACCTTGGAACCATGAGGTGGAG CTCTCCTGAGGTTAAAGGTGATTTTCCTGTCCCTAGAGACAGTCACATTGCTCTTGCAATTGGTGACAAGGTTGTTGTGT ATGGCGGAGACTCTGGTGATATGTACCATGGTGATGTTAGCATGCTTGATATGGAAACAATGACTTGGTCAAGGTTGAAA GTTCAAGGCTCTTCCCCAGGAGTCAGGGCAGGTCATGCAGCAGTAAATATTGGAAACAAGCTCTACATCATTGGAGGGGT TGGAGATAAATGTTATTGCAATGACATATGGGTCTTTGATATCTTCACTTGTTCATGGACTCAACTTGTTATACCTGGTC AACAACCGCAGGGGCGGTTTTCTCACACAGCTGTTGTTACGGACATGGATATTGCTATATATGGCGGCAGGTGTGGGGAA GATGAACGTCCTTTGAATGAATTGTTAGTATTGCAGCTTGGAGCAGAGTTTCCAAATGGACGTTACAACATTTCCGGGTG TAAAGTTTTTGGAACTTATTGGAATCAAGAAAAGAGAACCACACCAGGAGAAGCTGATATAAACTCGAAAATTCCACACA TGGGGAATAATGTGGAAGTGTTTGGAAAATGGGGTTCTGAAGTTGCATCCGAAAGAGCACTACCTTATCAATTTAATTCA GGAACTTATCAACAAAAGAGGCGGAAAATTGCTCCTGTGAAGGTGTGGGATGTTGAATCAGAACAAGAAGAACATTCTCT TTCACTCTCTCAACATTCATCTCCATCTCAATCTGATCAAGAACAGACACAAGCTCAAAAGGCCAATGCTTCTGCCATGG ATTCTCATCGCGTAAAACTGATCCACAAAATTCCAAGCAATTGGCAGCATGGGAGTGTCTCAAGCTATAAGAGAGTTTTG AAGAACGTCGCGCGAAGAAGTCCACAAGATCTTCATCACCTGGAATATCAACCAACACAAGAACGCTATCTTCATGTTGA TGATGATATAAACCGAGGTCGTCACCAAGCGGCAGAACACAAGCCAATGGCGCGAGGATACGCTCAACAACTGGTTGGAG CTGAAGTTCGAGGGAAAGTAGACGGCGCCTTTGATTCGGGTTTGCTGATGACAGCAACTGTGAATGGAAGAGTTTTCAGA GGAGTGTTGTTTGCACCAGTAGGTGCAGGAGTAAGCTCCACCAGTGTTGAGCCAAATTGTTCTTTACCATGTTTATTTCC CTCCTCCACTCAACCATTGATGAACTCAAATCATGTGGAGAATTTGAGGGGTTTGCGGCAACCGCTACTGGCTCGGCCAT CTCCAATCATGAGAGGCTCTGCTGCACCTTTAGCAAATGAACGCAAAGTGAGGAGTGACCTTCAAGGGTTGGTTTTGACA CTTGGAGGACCTGCTGCAAGTGGCAACCATGCTTGA
Protein sequence (LotjaGi5g1v0231100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQWSKLATTGEKPGPRDSHSAVLVGHKMIVFGGTNGFRKVNDTHILDLVTKEWIHLKCEGTPPSPRESHTATLVGDERLV IFGGSGEGEANYLNDLHVLDLGTMRWSSPEVKGDFPVPRDSHIALAIGDKVVVYGGDSGDMYHGDVSMLDMETMTWSRLK VQGSSPGVRAGHAAVNIGNKLYIIGGVGDKCYCNDIWVFDIFTCSWTQLVIPGQQPQGRFSHTAVVTDMDIAIYGGRCGE DERPLNELLVLQLGAEFPNGRYNISGCKVFGTYWNQEKRTTPGEADINSKIPHMGNNVEVFGKWGSEVASERALPYQFNS GTYQQKRRKIAPVKVWDVESEQEEHSLSLSQHSSPSQSDQEQTQAQKANASAMDSHRVKLIHKIPSNWQHGSVSSYKRVL KNVARRSPQDLHHLEYQPTQERYLHVDDDINRGRHQAAEHKPMARGYAQQLVGAEVRGKVDGAFDSGLLMTATVNGRVFR GVLFAPVGAGVSSTSVEPNCSLPCLFPSSTQPLMNSNHVENLRGLRQPLLARPSPIMRGSAAPLANERKVRSDLQGLVLT LGGPAASGNHA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 274 | 274 | 3.4E-46 | ||
| SUPERFAMILY | 2 | 253 | 252 | 7.59E-59 | ||
| PANTHER | 2 | 66 | 65 | 1.8E-68 | – | |
| Pfam | 15 | 56 | 42 | 9.4E-6 | – | |
| Pfam | 65 | 107 | 43 | 1.1E-7 | – | |
| PANTHER | 65 | 489 | 425 | 1.8E-68 | – | |
| SMART | 130 | 179 | 50 | 0.13 | ||
| Pfam | 169 | 216 | 48 | 7.6E-9 | – | |
| SMART | 180 | 229 | 50 | 1.2 | ||
| MobiDBLite | 342 | 373 | 32 | - | – | |
| MobiDBLite | 347 | 371 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0231100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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