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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0231100 |
| Transcript ID | LotjaGi5g1v0231100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kelch repeat protein, putative; TAIR: AT1G18610.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q5EA50|RABEK_BOVIN Rab9 effector protein with kelch motifs; TrEMBL-Plants: tr|K7LJG6|K7LJG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0231100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53839669..53844435) extracted from Lotus japonicus Gifu genome v1.2.
CTGTTGCTGTTGGTTGCCAGTGATTTGGACATGAAAGCGCCCATCTTTTCATGTCTATTGATATTGATAGTTGATACATC ACTTGGCTTGTTGATGTCTTCTTTTGACTCTCTCTTTCTCTTTCTCTACTACTACTACTTCACCCTCTTACTTGTTTATT CATCATCGTTGTCAAGCACTGTATTGAAGTATTAAACACATAGCAGAGAGAGAAAAACACAGATAGAGAAACATAAATGG GGTCTTTGGTTGCTGAAACAGAGAAGAAGAAGAAAGCAATGTGGTTGTATCCTAAGGTTTTGGGTTTTAATCCTTCTGAA AGATGGGGACACTCTGCTTGCTTCTCTGGGGGGCTTATGTATGTCTTCGGGGTATGAATGAAATCTTTCTTACTCATTCA AAAATGCATAAAAGATCATTTTCTTACAAGTTCTAGTTAATGGGGTGTTCTTATTAATGGTGTCTGAACTTTCTCATATG TTTTACTCCTTTGGAGCTTGTTAAAGGGTTGTGCTTATTAATGGTGTCTGCACTTTCTCATAATTTTTGCTTCTTTGAAG CTCTGGTGTCTCCTGACTTAATCACAGAATTTTCATTCTTGTGATGTGTTCAATTATTTCATAAGCTCCTAGTACAACTT TCTTAACTTCCCTTGCTTTCTAGCTATCTTTGGTTAACGACCAAACCACTTTCTTCTCTGAATTTTAGTTTTTTCCTAAT TTCTCTCAACACACATATTTCTTGAAGACACTTAACTGATTCATTTTTCTTTCTCTAAATAGTGGGACAATACGTGTTTC TTTTATGATCATAAATTTTGCTTTCTTAATATAGCAATGTTCACCATTTTGGTTCTTCTCTGTTAACAACCAGTGCTTTC ATTTCTTTGTAATCTGAGAAGTGAGAATCTCTATCTTAGTTATCACTTAATTAGCTCTCTATTCACCTTTTTATCTGATG ATGAAAAGTTTAATTATTGCTAAAACTCTCATATTACCTTGCTAAGCAAAATTATCATTAAACAAAATAACTCAATTTTT CTGTTGAGAGAAACTCTTATGTGACAACAAGATGGTGATAGTAGTTGTTGAATAGCTACAAAGAAAGGCATGAACATAAG TCTCATTTCCTTTCTTTGTTGGATTGCTTCAAATTCTACACATGTGAGCAAGTTTCTTCCTTTGATTTTGTTCTCTCCAA AATACTTACAGGGATTAAACCGAACTCAGACCAGGTGCCTTTATCTCTCGATTTAGTCCCTGGAATTATGGAGAGAACAG GTTCCATTGCCTTAAAAGCTAGTGAACATTTTTGAGATTTTTTTTTAGTTTTTTACTAATTATGATTCACAATCTTGACT TTTCAGGGCTGTTGTGGGGGGCTACATTTCAGTGATGTTCTGACTTTAGACCTTGAGAGAATGCAATGGAGCAAGCTTGC TACCACTGGTGAAAAGCCAGGCCCAAGAGATAGCCACAGTGCTGTTCTTGTGGGCCATAAAATGATAGTTTTTGGTGGCA CAAATGGGTTCAGGAAGGTGAATGACACTCACATACTAGATCTTGTCACCAAAGAGTGGATTCATCTTAAATGTGAAGGG ACTCCACCTTCTCCAAGGGAGAGTCACACTGCCACTCTTGTTGGTGATGAAAGGCTAGTGATTTTCGGTGGAAGTGGAGA AGGTGAAGCAAACTATTTAAATGACTTGCATGTTCTGGACCTTGGAACCATGAGGTGGAGCTCTCCTGAGGTTAAAGGTG ATTTTCCTGTCCCTAGAGACAGTCACATTGCTCTTGCAATTGGTGACAAGGTTGTTGTGTATGGCGGAGACTCTGGTGAT ATGTACCATGGTGATGTTAGCATGCTTGATATGGAAACAATGACTTGGTCAAGGGTATGGTATCCTTTTTTTGTAGTTTT GTTGATGTGGAATTGAATGATTAAAGATAATGTTTTCAAACTACATGGAGCTTAATAGTGTTGTTTCATTTTGTTTTTTT CATTTAAAATGACAGTTGAAAGTTCAAGGCTCTTCCCCAGGAGTCAGGGCAGGTCATGCAGCAGTAAATATTGGAAACAA GGTGAGTTTTCTTAGTTTGTATATAACATCAGACTAATAAAGCAGCTAACATATACTTTATGAAATGAAAATTGTGCATA TTGTTTTTAATTACCTCAGAAATCAGCAATAATATTCATTTCTCCTATCACTTGTGAATGATATCCATTTTCATCAGCAC TTACTTATTGCTTTTGGATAAAATTGATTTTGGTAAAATTAATTATGGTAAAAGTGTGTTGAAAGTGAAAATGATTTATG TTTTACATTTACGAGAAAAGTGATTTTTGTAGGGTAATATTGTGAAATCCGATTGCCAAATCTCACAATTGATTATATTC AACGTAAAAGTTACTTTCTATAGCTGCTACGCAGATTCGATTGTGTAACTGAAATCAATTCTCAAATATATATATTTTCA CCCAAAACTGATTGTACTCAATGACAATTGAGTTTGAGGTCCTGGACGGGGAACCAAACACACACTCAATACTATATGGT ACTATTTTGAACTTATCAGCTAAGTAGATCAATTCTTCATAATTTACAGCTCTACATCATTGGAGGGGTTGGAGATAAAT GTTATTGCAATGACATATGGGTCTTTGATATCTTCACTTGTTCATGGACTCAACTTGTTATACCTGGTCAACAACCGCAG GGGCGGTTTTCTCACACAGCTGTTGTTACGGACATGGATATTGCTATATATGGCGGGTAGGTTCCCATCAAATTAGTCGA CTATTGGTGATGAAATAGGATGAATTGAGACAGCATTTTGTAAATACCGAATTATCTTGAATATATTCACTATCTTTGGA CAAATGACATTATGATAAATTAATCCTATTTCGTTTTCTATTTCTTTCAGCATACAAGTTTTTCATTTTCATTCTGATAG CTTGCGTTTGTCTTATAGCAGGTGTGGGGAAGATGAACGTCCTTTGAATGAATTGTTAGTATTGCAGCTTGGAGCAGAGT TTCCAAATGGACGTTACAACATTTCCGGGTGTAAAGTTTTTGGAACTTATTGGAATCAAGAAAAGAGAACCACACCAGGA GAAGCTGATATAAACTCGGTACAAAAGTTCATGTAGCTAGCAATGTTGTTAGTTGTTAAAACTTATAAGTACTTGCCCAT GTTATAGTTGATTAAAGAAAAACAACTAAAGATGTTTTTTTTTACCAGAAAATTCCACACATGGGGAATAATGTGGAAGT GTTTGGAAAATGGGGTTCTGAAGTTGCATCCGAAAGAGCACTACCTTATCAATTTAATTCAGGTGAGTTAGAGTTAAGAG TGTTTACCATCTGAAAAAGGATTCTCAACTTGGTTGATTGAAAATTGTAACTTTAATTATGCAGGAACTTATCAACAAAA GAGGCGGAAAATTGCTCCTGTGAAGGTGTGGGATGTTGAATCAGAACAAGAAGAACATTCTCTTTCACTCTCTCAACATT CATCTCCATCTCAATCTGATCAAGAACAGACACAAGCTCAAAAGGCCAATGCTTCTGCCATGGATTCTCATCGCGTAAAA CTGATCCACAAAATTCCAAGCAATTGGCAGCATGGGAGTGTCTCAAGCTATAAGAGAGTTTTGAAGAACGTCGCGCGAAG AAGTCCACAAGATCTTCATCACCTGGAATATCAACCAACACAAGAACGCTATCTTCATGTTGATGATGATATAAACCGAG GTCGTCACCAAGCGGCAGAACACAAGCCAATGGCGCGAGGATACGCTCAACAACTGGTAGTCGATCGATTGCTTTCTCAA ATCTCAAATTTCTGCTTCGCAAAACATCTTGCTCAAACTATTTTTTGTGTCTTCGTATAAAAAACAGTAGTGAATTAAGT AAGTCCTTATTCTTTCGTGCTCTCTTGATTTTGAATCCTAGGTTGGAGCTGAAGTTCGAGGGAAAGTAGACGGCGCCTTT GATTCGGGTTTGCTGATGACAGCAACTGTGAATGGAAGAGTTTTCAGAGGAGTGTTGTTTGCACCAGTAGTAAGCTTTTG AACTTTGCTTTTATAACATGTTACATTTTGATTGTTGTAGAAATTAGCAAAGTATGAAGTTAATTTCATTGATAAGCATG TTGATCACCAATAACTGAATGAAAGTTATCAATAACGGAATAGAAATTAACAACTAAGCAACTGATCCTCTAATCTCTAA CTAAAATACGTACAGCTAACAATTGTAGTGCAAGTGCATTAACCATTTTTTGGTAACAAATTTATCAGGGTGCAGGAGTA AGCTCCACCAGTGTTGAGCCAAATTGTTCTTTACCATGTTTATTTCCCTCCTCCACTCAACCATTGATGAACTCAAATCA TGTGGAGAATTTGAGGGGTTTGCGGCAACCGCTACTGGCTCGGCCATCTCCAATCATGAGAGGCTCTGCTGCACCTTTAG CAAATGAACGCAAAGTGAGGAGTGACCTTCAAGGGTTGGTTTTGACACTTGGAGGACCTGCTGCAAGTGGCAACCATGCT TGATCATTAGGTGAATTGTTGAGGAGGCTAATAAGGTTTATGTAAATTTTAGAAATAAATCATGTGCACTTGAATGGTTA TGCTTTTCTAGGATCCATCATAATATTTGGTTTTAACTGTTCTGGAATAAGACTTGTTCGCCTACCATAAGCCCATAACA ATAGTAACATAATCGTGTTTGGAAATCTTTTTGCAATTGATTCTAAT
CDS sequence (LotjaGi5g1v0231100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATGGAGCAAGCTTGCTACCACTGGTGAAAAGCCAGGCCCAAGAGATAGCCACAGTGCTGTTCTTGTGGGCCATAA AATGATAGTTTTTGGTGGCACAAATGGGTTCAGGAAGGTGAATGACACTCACATACTAGATCTTGTCACCAAAGAGTGGA TTCATCTTAAATGTGAAGGGACTCCACCTTCTCCAAGGGAGAGTCACACTGCCACTCTTGTTGGTGATGAAAGGCTAGTG ATTTTCGGTGGAAGTGGAGAAGGTGAAGCAAACTATTTAAATGACTTGCATGTTCTGGACCTTGGAACCATGAGGTGGAG CTCTCCTGAGGTTAAAGGTGATTTTCCTGTCCCTAGAGACAGTCACATTGCTCTTGCAATTGGTGACAAGGTTGTTGTGT ATGGCGGAGACTCTGGTGATATGTACCATGGTGATGTTAGCATGCTTGATATGGAAACAATGACTTGGTCAAGGTTGAAA GTTCAAGGCTCTTCCCCAGGAGTCAGGGCAGGTCATGCAGCAGTAAATATTGGAAACAAGCTCTACATCATTGGAGGGGT TGGAGATAAATGTTATTGCAATGACATATGGGTCTTTGATATCTTCACTTGTTCATGGACTCAACTTGTTATACCTGGTC AACAACCGCAGGGGCGGTTTTCTCACACAGCTGTTGTTACGGACATGGATATTGCTATATATGGCGGGTGTGGGGAAGAT GAACGTCCTTTGAATGAATTGTTAGTATTGCAGCTTGGAGCAGAGTTTCCAAATGGACGTTACAACATTTCCGGGTGTAA AGTTTTTGGAACTTATTGGAATCAAGAAAAGAGAACCACACCAGGAGAAGCTGATATAAACTCGAAAATTCCACACATGG GGAATAATGTGGAAGTGTTTGGAAAATGGGGTTCTGAAGTTGCATCCGAAAGAGCACTACCTTATCAATTTAATTCAGGA ACTTATCAACAAAAGAGGCGGAAAATTGCTCCTGTGAAGGTGTGGGATGTTGAATCAGAACAAGAAGAACATTCTCTTTC ACTCTCTCAACATTCATCTCCATCTCAATCTGATCAAGAACAGACACAAGCTCAAAAGGCCAATGCTTCTGCCATGGATT CTCATCGCGTAAAACTGATCCACAAAATTCCAAGCAATTGGCAGCATGGGAGTGTCTCAAGCTATAAGAGAGTTTTGAAG AACGTCGCGCGAAGAAGTCCACAAGATCTTCATCACCTGGAATATCAACCAACACAAGAACGCTATCTTCATGTTGATGA TGATATAAACCGAGGTCGTCACCAAGCGGCAGAACACAAGCCAATGGCGCGAGGATACGCTCAACAACTGGTTGGAGCTG AAGTTCGAGGGAAAGTAGACGGCGCCTTTGATTCGGGTTTGCTGATGACAGCAACTGTGAATGGAAGAGTTTTCAGAGGA GTGTTGTTTGCACCAGTAGGTGCAGGAGTAAGCTCCACCAGTGTTGAGCCAAATTGTTCTTTACCATGTTTATTTCCCTC CTCCACTCAACCATTGATGAACTCAAATCATGTGGAGAATTTGAGGGGTTTGCGGCAACCGCTACTGGCTCGGCCATCTC CAATCATGAGAGGCTCTGCTGCACCTTTAGCAAATGAACGCAAAGTGAGGAGTGACCTTCAAGGGTTGGTTTTGACACTT GGAGGACCTGCTGCAAGTGGCAACCATGCTTGA
Protein sequence (LotjaGi5g1v0231100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQWSKLATTGEKPGPRDSHSAVLVGHKMIVFGGTNGFRKVNDTHILDLVTKEWIHLKCEGTPPSPRESHTATLVGDERLV IFGGSGEGEANYLNDLHVLDLGTMRWSSPEVKGDFPVPRDSHIALAIGDKVVVYGGDSGDMYHGDVSMLDMETMTWSRLK VQGSSPGVRAGHAAVNIGNKLYIIGGVGDKCYCNDIWVFDIFTCSWTQLVIPGQQPQGRFSHTAVVTDMDIAIYGGCGED ERPLNELLVLQLGAEFPNGRYNISGCKVFGTYWNQEKRTTPGEADINSKIPHMGNNVEVFGKWGSEVASERALPYQFNSG TYQQKRRKIAPVKVWDVESEQEEHSLSLSQHSSPSQSDQEQTQAQKANASAMDSHRVKLIHKIPSNWQHGSVSSYKRVLK NVARRSPQDLHHLEYQPTQERYLHVDDDINRGRHQAAEHKPMARGYAQQLVGAEVRGKVDGAFDSGLLMTATVNGRVFRG VLFAPVGAGVSSTSVEPNCSLPCLFPSSTQPLMNSNHVENLRGLRQPLLARPSPIMRGSAAPLANERKVRSDLQGLVLTL GGPAASGNHA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 110 | 110 | 1.2E-18 | ||
| SUPERFAMILY | 2 | 253 | 252 | 7.59E-59 | ||
| PANTHER | 2 | 138 | 137 | 7.0E-69 | – | |
| Pfam | 15 | 56 | 42 | 9.4E-6 | – | |
| Pfam | 65 | 107 | 43 | 1.1E-7 | – | |
| Gene3D | 111 | 280 | 170 | 3.3E-23 | ||
| PANTHER | 111 | 252 | 142 | 7.0E-69 | – | |
| SMART | 130 | 179 | 50 | 0.13 | ||
| Pfam | 169 | 216 | 48 | 7.5E-9 | – | |
| SMART | 180 | 229 | 50 | 1.2 | ||
| Pfam | 218 | 251 | 34 | 4.6E-4 | – | |
| MobiDBLite | 341 | 372 | 32 | - | – | |
| MobiDBLite | 346 | 370 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0231100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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