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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0231400 |
| Transcript ID | LotjaGi5g1v0231400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT5G48910.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910; TrEMBL-Plants: tr|M5W3D3|M5W3D3_PRUPE Uncharacterized protein; Found in the gene: LotjaGi5g1v0231400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53875278..53877655) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAAGATCAACCAAAAACAATTGGTGGTAATAATCTCAATGTGGAATTCACTGCCTAATGTGTCAATGCAACATGA CATTATGGATAACTTCATGCTCCTAGAATGTTGATGCTATAAATCTTGTTCTCTGATTGTCCACATAGCCTTTTCCCAGA AACTGGATAACATTGAGAAAATGAGCACCACAGCCACAAATTTCCCCTCTGGTCTCAAACCAATTGAGCTCTCATCAGAC CAAGCTCCTTCATCAAAACTCTCACAGAAAACAGTTCTAGACATCCTGAACAAGAAATGTTTTCATTCCCTTCAACATCT CAAGCAGGCTCATGCTATCATATTGAAAACTGCTCATTTTCATGACCATTTTGTATCTGGCACCTTACTCAAGTGCTATG CAAATCCCAATTTCAATAACTTTACCTTGGCAACCAAAGTCTTTGATTGCATCCCAAGGCCCAATGTTTTTGTGTGTAAC ATATATCTCAAAGGGAGCATAGAGAATGGGGAGCCACACAAGGCTATATCATGTTATCATAAGATGATGGTGCTGAACTC TAGGCCTAACAAGTTCACTTACCCTACTTTATTCAAGGCTTGTGCTGTTACAGGTTCTGTCAAAGAAGGGGTTCAGTTCC ATGCTTTTGTGGTGAAACAAGGGCTTACTGGGGATGTCCACATCAAGAGTGCTGGAATTCAAATGTATGCTTCATTTGGA CTTTTTAGAGAAGCAAGAAAAATGCTTGATGAGAGTGGTAAAACTCAAACTGATGTCATTTGTTGGAATGCAATGATTGA TGGGTACTTGAAGTGTGGAGAAGTGGAAGCTGCAAATGAGGTGTTTGTCAATATGCCTGACAAGAATGTTGGATCCTGGA ATGCAATGATAAGTGGGTTGGCTAGGTGTGGGATGATTGAGAATGCAAGGACTTTATTTGATGAAATGGGTGAGAGGGAT GAGATATCTTGGAGTGCAATCATTGATGGCTACATCAAACAAAGGTGCTTCAAGGAGGCATTGGAAGTTTTTCACCAAAT GCAGAGAGAAAAGATAAAGCCAAGTAGGCATCTATTACCAAGCATGCTAACTGTTTGTGCAAATGTGGGGTCTCTGGATC AAGGTAGATGGATTCATTCATTTGTGGAAAGGAACTCTATTCAGGTGGATGCAGTGTTAGGGACTGCTTTGATTGACATG TATGTTAAATGCGGGCGTCTCGACATGGCATGGGAGGTGTTTGAGAAAATGAAAGTGAGAGAAGTCTCCACTTGGAATGC TATGATTGGAGGACTTGCTATCCATGGCCGAGCAGAGGATGCAATGAAGCTCTTCACCAAGATGAATGGGGAGAAGCGGA AACCAAATGGTGTCACATTTGTGGGGGTTCTGAATGCATGTGCACATGCTGGAATGGTTGAAAGAGGTCTTGGATTGTTC AATTCAATGAAGAGAGTGTATGAGATTGAGCCTGAGATGGAGCATTTTGGGTGTGTGGTTGATCTTCTGGGAAGGGCTGG ACTTGTGGAGGAAGCAGAGAAGTTTATAGAATCTATGCCAGTGAAGCCAAATGTAGCTGTTTGGGGAGCACTTTTAAATG CATGCAGGATACATGGAAATGTTGAGCTAGGAGAAAGAGTGGGGTGGATTTTACTTGATATGGAGCCTCGAAACAGTGGT CGCTATGCATTGTTATCAAACATCTATGCAAAAGCAGGAAGATGGGATGATGTTGCTAGAGTTAGAAAGTTGATGAAAGA AAGAGGAATTGAAACTGTTCCTGGAAGTAGCATGATGGATATGGGTGGTAAAGTTCATGAATTCAAAATGGGAGATAGTT CACACCCTCAAATGAAAGAAATATATCTCATGTTGGAAAAGATGATGGATAAGCTGCAGATAGAAGGCTATTCACCAAAT ACATCCATGGTGTCCTATGACATTGAAGAGGAAGAAAAGGAAACTGTGCTTAAGCAGCATAGTGAAAAGATTGCACTTGC TTTTGGACTTCTTCATGCAAAACCAGGAACAACTCTGCACATTGTGAAAAATTTAAGGGTTTGTGCGGATTGTCATTCTG CATTCAAGCTAGTTTCTAAAATTTATGGTCACAATATTATTATGAGAGACCGTGTGCGGTATCATCATTTCAAAAATGGA ATGTGTTCATGCAAGGATTTTTGGTAAGGTGTTGAATAGATGTGTTAACTGTTAATAGAAGCTAAATTGACTTTGTTTCC AACTGTTTTGTTAGGAAGAGAAAAATTTATGATGAGTAGAACAGTAGAAAGGATACCTTACACTTCTTGTTGAACAATAA TGCTAACATGCTGAACTTAGCAAAGAGGATACTAGTATAACATTTTTTCTGTATTTCA
CDS sequence (LotjaGi5g1v0231400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCACCACAGCCACAAATTTCCCCTCTGGTCTCAAACCAATTGAGCTCTCATCAGACCAAGCTCCTTCATCAAAACT CTCACAGAAAACAGTTCTAGACATCCTGAACAAGAAATGTTTTCATTCCCTTCAACATCTCAAGCAGGCTCATGCTATCA TATTGAAAACTGCTCATTTTCATGACCATTTTGTATCTGGCACCTTACTCAAGTGCTATGCAAATCCCAATTTCAATAAC TTTACCTTGGCAACCAAAGTCTTTGATTGCATCCCAAGGCCCAATGTTTTTGTGTGTAACATATATCTCAAAGGGAGCAT AGAGAATGGGGAGCCACACAAGGCTATATCATGTTATCATAAGATGATGGTGCTGAACTCTAGGCCTAACAAGTTCACTT ACCCTACTTTATTCAAGGCTTGTGCTGTTACAGGTTCTGTCAAAGAAGGGGTTCAGTTCCATGCTTTTGTGGTGAAACAA GGGCTTACTGGGGATGTCCACATCAAGAGTGCTGGAATTCAAATGTATGCTTCATTTGGACTTTTTAGAGAAGCAAGAAA AATGCTTGATGAGAGTGGTAAAACTCAAACTGATGTCATTTGTTGGAATGCAATGATTGATGGGTACTTGAAGTGTGGAG AAGTGGAAGCTGCAAATGAGGTGTTTGTCAATATGCCTGACAAGAATGTTGGATCCTGGAATGCAATGATAAGTGGGTTG GCTAGGTGTGGGATGATTGAGAATGCAAGGACTTTATTTGATGAAATGGGTGAGAGGGATGAGATATCTTGGAGTGCAAT CATTGATGGCTACATCAAACAAAGGTGCTTCAAGGAGGCATTGGAAGTTTTTCACCAAATGCAGAGAGAAAAGATAAAGC CAAGTAGGCATCTATTACCAAGCATGCTAACTGTTTGTGCAAATGTGGGGTCTCTGGATCAAGGTAGATGGATTCATTCA TTTGTGGAAAGGAACTCTATTCAGGTGGATGCAGTGTTAGGGACTGCTTTGATTGACATGTATGTTAAATGCGGGCGTCT CGACATGGCATGGGAGGTGTTTGAGAAAATGAAAGTGAGAGAAGTCTCCACTTGGAATGCTATGATTGGAGGACTTGCTA TCCATGGCCGAGCAGAGGATGCAATGAAGCTCTTCACCAAGATGAATGGGGAGAAGCGGAAACCAAATGGTGTCACATTT GTGGGGGTTCTGAATGCATGTGCACATGCTGGAATGGTTGAAAGAGGTCTTGGATTGTTCAATTCAATGAAGAGAGTGTA TGAGATTGAGCCTGAGATGGAGCATTTTGGGTGTGTGGTTGATCTTCTGGGAAGGGCTGGACTTGTGGAGGAAGCAGAGA AGTTTATAGAATCTATGCCAGTGAAGCCAAATGTAGCTGTTTGGGGAGCACTTTTAAATGCATGCAGGATACATGGAAAT GTTGAGCTAGGAGAAAGAGTGGGGTGGATTTTACTTGATATGGAGCCTCGAAACAGTGGTCGCTATGCATTGTTATCAAA CATCTATGCAAAAGCAGGAAGATGGGATGATGTTGCTAGAGTTAGAAAGTTGATGAAAGAAAGAGGAATTGAAACTGTTC CTGGAAGTAGCATGATGGATATGGGTGGTAAAGTTCATGAATTCAAAATGGGAGATAGTTCACACCCTCAAATGAAAGAA ATATATCTCATGTTGGAAAAGATGATGGATAAGCTGCAGATAGAAGGCTATTCACCAAATACATCCATGGTGTCCTATGA CATTGAAGAGGAAGAAAAGGAAACTGTGCTTAAGCAGCATAGTGAAAAGATTGCACTTGCTTTTGGACTTCTTCATGCAA AACCAGGAACAACTCTGCACATTGTGAAAAATTTAAGGGTTTGTGCGGATTGTCATTCTGCATTCAAGCTAGTTTCTAAA ATTTATGGTCACAATATTATTATGAGAGACCGTGTGCGGTATCATCATTTCAAAAATGGAATGTGTTCATGCAAGGATTT TTGGTAA
Protein sequence (LotjaGi5g1v0231400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTTATNFPSGLKPIELSSDQAPSSKLSQKTVLDILNKKCFHSLQHLKQAHAIILKTAHFHDHFVSGTLLKCYANPNFNN FTLATKVFDCIPRPNVFVCNIYLKGSIENGEPHKAISCYHKMMVLNSRPNKFTYPTLFKACAVTGSVKEGVQFHAFVVKQ GLTGDVHIKSAGIQMYASFGLFREARKMLDESGKTQTDVICWNAMIDGYLKCGEVEAANEVFVNMPDKNVGSWNAMISGL ARCGMIENARTLFDEMGERDEISWSAIIDGYIKQRCFKEALEVFHQMQREKIKPSRHLLPSMLTVCANVGSLDQGRWIHS FVERNSIQVDAVLGTALIDMYVKCGRLDMAWEVFEKMKVREVSTWNAMIGGLAIHGRAEDAMKLFTKMNGEKRKPNGVTF VGVLNACAHAGMVERGLGLFNSMKRVYEIEPEMEHFGCVVDLLGRAGLVEEAEKFIESMPVKPNVAVWGALLNACRIHGN VELGERVGWILLDMEPRNSGRYALLSNIYAKAGRWDDVARVRKLMKERGIETVPGSSMMDMGGKVHEFKMGDSSHPQMKE IYLMLEKMMDKLQIEGYSPNTSMVSYDIEEEEKETVLKQHSEKIALAFGLLHAKPGTTLHIVKNLRVCADCHSAFKLVSK IYGHNIIMRDRVRYHHFKNGMCSCKDFW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 36 | 173 | 138 | 1.1E-12 | ||
| PANTHER | 44 | 189 | 146 | 6.8E-119 | – | |
| Pfam | 94 | 142 | 49 | 1.7E-8 | ||
| ProSiteProfiles | 95 | 129 | 35 | 8.122 | ||
| ProSiteProfiles | 130 | 164 | 35 | 7.465 | ||
| ProSiteProfiles | 165 | 195 | 31 | 5.174 | ||
| PANTHER | 167 | 226 | 60 | 6.8E-119 | – | |
| Gene3D | 174 | 260 | 87 | 1.9E-21 | ||
| ProSiteProfiles | 198 | 232 | 35 | 10.939 | ||
| TIGRFAM | 200 | 229 | 30 | 1.4E-5 | ||
| Pfam | 201 | 230 | 30 | 4.5E-6 | ||
| PANTHER | 202 | 262 | 61 | 6.8E-119 | – | |
| TIGRFAM | 232 | 259 | 28 | 1.6E-6 | ||
| Pfam | 232 | 259 | 28 | 1.6E-7 | ||
| ProSiteProfiles | 233 | 259 | 27 | 7.805 | ||
| PANTHER | 234 | 319 | 86 | 6.8E-119 | – | |
| ProSiteProfiles | 260 | 294 | 35 | 12.474 | ||
| Pfam | 260 | 296 | 37 | 1.0E-7 | ||
| Gene3D | 261 | 423 | 163 | 2.9E-43 | ||
| TIGRFAM | 262 | 295 | 34 | 1.2E-9 | ||
| PANTHER | 263 | 534 | 272 | 6.8E-119 | – | |
| ProSiteProfiles | 295 | 329 | 35 | 5.404 | ||
| ProSiteProfiles | 330 | 360 | 31 | 9.493 | ||
| TIGRFAM | 335 | 361 | 27 | 3.1E-5 | ||
| Pfam | 335 | 360 | 26 | 9.3E-6 | ||
| ProSiteProfiles | 361 | 395 | 35 | 10.808 | ||
| Pfam | 362 | 408 | 47 | 6.9E-10 | ||
| TIGRFAM | 364 | 396 | 33 | 4.1E-5 | ||
| ProSiteProfiles | 396 | 426 | 31 | 7.881 | ||
| TIGRFAM | 398 | 425 | 28 | 6.0E-4 | ||
| Gene3D | 424 | 601 | 178 | 6.0E-16 | ||
| ProSiteProfiles | 432 | 462 | 31 | 6.774 | ||
| Pfam | 436 | 460 | 25 | 0.092 | ||
| ProSiteProfiles | 498 | 532 | 35 | 9.306 | ||
| Pfam | 506 | 530 | 25 | 0.048 | ||
| Pfam | 534 | 658 | 125 | 8.5E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0231400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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