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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0232100 |
| Transcript ID | LotjaGi5g1v0232100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G56570.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FXA9|PPR83_ARATH Putative pentatricopeptide repeat-containing protein At1g56570; TrEMBL-Plants: tr|G7I9I3|G7I9I3_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi5g1v0232100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53963766..53967382) extracted from Lotus japonicus Gifu genome v1.2.
GGAACACCAAGTTAAGCATGAGCCCGAATGTACCCAATCGCACCCCCTTGTCAAAAATTCGCTGTCCAACTTCTCCACCG TACACCTCTCTCCCCAAGTAATCAGCGTCGAACTGAGAAATGGAAACCACACTAACCACTTCAGACACGTCACCAACATA AGGATCCACATGGGTTTCATCAGTGTGCGAAACGCACCGAATAATTCCCCAAAGAAACGCATGTCACTCATGTGAGCGTG ATCACCATCATCACCACCTTCGGTTTCCTGAAACAGTTGCTCCTTCACGTAGATCATGGCCGCGGTGGCGAGAATCAAGA GAAGATTAACGGAGATGAAGAAGCAGCACTTCAGGTTCGCGTTGGAGTCATCACAGGCGATTGTTTTCGTGAAGGGGAGA AAGTGGTGGTAGAGGTAGTCGTTGGTGCCCGCGACGTAACCACCGACATTGTCGATTGCCATGAAGAAGAATTACAAGGA GTTTGTTGTTCAAGTTTTGCGTCGGTCGCTGACGGTGAGGTCGTCGAGGAAGGCGCAGAGTGGGCCTTGGAGCATGTTTT TTGCGACGTCAAAGATCCAGAATCCGACGACGAAGACGGCGATGGCGCGGGGACGAGCTTTTTCGGTGTGAGAGTCGCCA GCGGAGTGGTTGATGTCGGCTGCGTAGCCGCCGGCACCAACGACTACCTCTACCGCCACTTTCTCCCCTTCACAAAAACA ATCGCCTGTGATGACTCCTGCGCGAAGTTGAACTGCTGCTTCTTCAGAGCTAATTAGCTCTGAAATTATTAGCTGTGAGA TTTGTGGGAATTAAAAATTTGCTAGGAACCGTGTAAATATCAACTCAACCAAACACTACTTTATTTGGTTGGAGGGAGGG AAAAGGAAAAGGAAAAGGAAAAGGAAAGACACGGAAATTGAATGAATTTGTTTTTAACCTTAATCTAAATTCATTCATCG ATTTCTTATTTCAATCTCTGTCTGCAACAAAGTGAGAGCAGAACCGAGTTTGTCAACTCAACCAAACAGCAAGTTCATGA AATCATCGCACGATAGTGTTCCATTTTCCCAACTTGCAAGCATGTCTCAATCAGAATCGCTTAAATAACGCTTACAATGG CGAATGCTGCTAGAAAGTTTCTACCCCGTATTGATTTCCGACCCGCCCCATCAGTTGTTCTTCACCACCGCACCCAACTG AACGACTCTCCCTTTCGCCCCAAGGACTTAACCGGTTTAACCACCGATCTCATCAAGTCCTACTTCGACAAAGGCTCCAT TCAAGAAGCACACACACTGTTCGATGAAATGACCCACAGAGATGTCGTCGCCTGGACCGCCATGATCACTGGCTACACCT CCTGCAACCATCACAGCCGTGCATGGAAGGTGTTTCCTCGAATGCTCAGAGACGGGGTGCGGCCCAACGCATTCACGTTG TCCGCGGTTTTGAAGGCGTGTAAAGGGTTGAGAGCTCTTTTCTGTGGTGAATTAGCGCATGGGTTGGCGGTGAAGATTGG TGCACGCGGATCGTCCATTTATGTTGATAATGCACTCATGGACATGTATGCCACTTGCTGCGATAGCATGGACCGCGCGA GAATGGTTTTCGAGGATATCGTAACCAAGAATGCTGTCTCATGGACTACTTTGATCACTGGGTATACTCATAGAGGTGAT GCCTTTGGTGGTCTCAGAGTTTTCCGTCAAATGGTTCTGGTAAGCTTCTGTTTTATTATGAAATAAGTGTAAAACCATGT TATTTGAGATGAAATAAGTGTAACGTAGTTGCTTGGTGACAAACAGGAAGAAGGTGAGCTGAGTCCATTCAGCTTCTCAA TTGCAGTTAGCGCGTGTGCCTCCGTTGGCTCAGGTATTTTGGGCAAGCAGTTACATGCTGCAGTGATTAATCATGGATTT CAGTCCAATCTTCCTGTGATGAATTCCATACTGGACATGTATTGCAGGTGTCGTTGTGCATCTGAGGCAAAGCAATTCTT CTGTGAAATGACGCAGAAAGACACAATCACATGGAATACATTGATAGCTGGATTTGAAACACTGGATTCTAAAGAGTCTC TCTGTATATTTTCGCTAATGGTTTCGGAAGGTTTTAGTCCAAATTGCTTCACATTTACTAGTGTGATAGCGGCGTGTGCT AACTTAGCAATTCTGTATTGTGGGCAACAACTTCATGGTGCAACTGTTTGTAGAGGCCTCGATAACAGCTTGGAATTATG CAATGCCCTCATTGATATGTATGCCAAGTGTGGGAATGTTGCTGATTCACATAAGATATTTAGCGAAATGTCGTGCACAA ACTTGGTCTCATGGACTTCCATGATGATTGGATACGGGTCTCATGGACATGGAAAAGAGGCTGTTGAGTTGTTCAATAAG ATGGTCGGATCAGGCATTAAACCGGATAAGATAGTGTTTATGGCAGTTCTCAGTGCTTGTAGCCATGCCGGACTAGTGGA TGAAGGCCTGAGATATTTTAGATTAATGACCAGCTATTACAATGTTGCACCCGATCGAGACATATATGGATGTGTGGTGG ATTTGCTTGGACGCGCTGGAAGAGTAAAGGAAGCTTATCAACTCATAGAGAATATGCCATTCAAGCCAGATGAGTCTATA TGGGTAGCCCTTCTTGGAGCTTGTAAAGCACATAAGCAACAAAGTTTGGGCAAATTAGCAGCTTTGAGGGTTTTGGAGAT GAAGCCAAAAAAGGCTGGAACTTATTTGCTGTTATCAAATATTTATGCTAGTGAAGGTAACTGGGCAGATTCTGCCAGCT TGAGGAAGCTTATGAGAAGTACTAAAAGTAAAAAGGAGCCAGGGAGGAGCTGGATTGAATTGAAAAACCAGGTTCACAGT TTCGTTGTTGGAGATAGATTTGTTTCTTCGAATGAGAAGGTGTGTGAAGTTCTGAAATTGTTGATTATACATCTGAAAGA TGCAGGATATGTCCTTGATTTAGATTGCTCTGTACATGACTTGGAAGATGAAACTTGAATAGAAGCTGAAAAGACGATAT TGTTATTGCTAAATGCTTTATAGCTGATCCTTCAGCTTATATACCCTCAAATTTTCACAAGCATAGCCGTGTAGACTATT CGCGGTTATGATGTACAGAAGCAGCTAGTTGGTTTTAGTGGCCTTGTTCACAATGCTTCTGCTTCTTGGCTGGGTGGTAT TTTTGGCTGCTCCGACAGGTCGTGTGCTCTCGGATGAGCTAACGTCCATCAAGCATGATCTTCTCTTAGCTTGGGAGAAT TGGGTATTCGGCATGTCGTTTATGAGAATGATTCGATGCTATTAGGATGTTGGATCTCCTCATTTGACTTCGCATTTGGG AGCTTTGTTGGTGGAGATCGTTAATATCTCTACTCGTCTGTGGTGTATTTGCTTCCAGCATGTTTCCCAAGCATAGCCGT GTAGACTGTTATTTTCCCTCACACAAAGTTCATATTTTTTAAATCTCAAAAAGTAAAATATACTACTACGACTTTAGAAG GAATATATCAATATATGGTGGCCATGTCAATGTGCAACATTAATCCACACATGAACCATTATTTTACCTGTGCCCATTTT ACATGATTTTCGCTTAT
CDS sequence (LotjaGi5g1v0232100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAATGCTGCTAGAAAGTTTCTACCCCGTATTGATTTCCGACCCGCCCCATCAGTTGTTCTTCACCACCGCACCCA ACTGAACGACTCTCCCTTTCGCCCCAAGGACTTAACCGGTTTAACCACCGATCTCATCAAGTCCTACTTCGACAAAGGCT CCATTCAAGAAGCACACACACTGTTCGATGAAATGACCCACAGAGATGTCGTCGCCTGGACCGCCATGATCACTGGCTAC ACCTCCTGCAACCATCACAGCCGTGCATGGAAGGTGTTTCCTCGAATGCTCAGAGACGGGGTGCGGCCCAACGCATTCAC GTTGTCCGCGGTTTTGAAGGCGTGTAAAGGGTTGAGAGCTCTTTTCTGTGGTGAATTAGCGCATGGGTTGGCGGTGAAGA TTGGTGCACGCGGATCGTCCATTTATGTTGATAATGCACTCATGGACATGTATGCCACTTGCTGCGATAGCATGGACCGC GCGAGAATGGTTTTCGAGGATATCGTAACCAAGAATGCTGTCTCATGGACTACTTTGATCACTGGGTATACTCATAGAGG TGATGCCTTTGGTGGTCTCAGAGTTTTCCGTCAAATGGTTCTGGAAGAAGGTGAGCTGAGTCCATTCAGCTTCTCAATTG CAGTTAGCGCGTGTGCCTCCGTTGGCTCAGGTATTTTGGGCAAGCAGTTACATGCTGCAGTGATTAATCATGGATTTCAG TCCAATCTTCCTGTGATGAATTCCATACTGGACATGTATTGCAGGTGTCGTTGTGCATCTGAGGCAAAGCAATTCTTCTG TGAAATGACGCAGAAAGACACAATCACATGGAATACATTGATAGCTGGATTTGAAACACTGGATTCTAAAGAGTCTCTCT GTATATTTTCGCTAATGGTTTCGGAAGGTTTTAGTCCAAATTGCTTCACATTTACTAGTGTGATAGCGGCGTGTGCTAAC TTAGCAATTCTGTATTGTGGGCAACAACTTCATGGTGCAACTGTTTGTAGAGGCCTCGATAACAGCTTGGAATTATGCAA TGCCCTCATTGATATGTATGCCAAGTGTGGGAATGTTGCTGATTCACATAAGATATTTAGCGAAATGTCGTGCACAAACT TGGTCTCATGGACTTCCATGATGATTGGATACGGGTCTCATGGACATGGAAAAGAGGCTGTTGAGTTGTTCAATAAGATG GTCGGATCAGGCATTAAACCGGATAAGATAGTGTTTATGGCAGTTCTCAGTGCTTGTAGCCATGCCGGACTAGTGGATGA AGGCCTGAGATATTTTAGATTAATGACCAGCTATTACAATGTTGCACCCGATCGAGACATATATGGATGTGTGGTGGATT TGCTTGGACGCGCTGGAAGAGTAAAGGAAGCTTATCAACTCATAGAGAATATGCCATTCAAGCCAGATGAGTCTATATGG GTAGCCCTTCTTGGAGCTTGTAAAGCACATAAGCAACAAAGTTTGGGCAAATTAGCAGCTTTGAGGGTTTTGGAGATGAA GCCAAAAAAGGCTGGAACTTATTTGCTGTTATCAAATATTTATGCTAGTGAAGGTAACTGGGCAGATTCTGCCAGCTTGA GGAAGCTTATGAGAAGTACTAAAAGTAAAAAGGAGCCAGGGAGGAGCTGGATTGAATTGAAAAACCAGGTTCACAGTTTC GTTGTTGGAGATAGATTTGTTTCTTCGAATGAGAAGGTGTGTGAAGTTCTGAAATTGTTGATTATACATCTGAAAGATGC AGGATATGTCCTTGATTTAGATTGCTCTGTACATGACTTGGAAGATGAAACTTGA
Protein sequence (LotjaGi5g1v0232100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANAARKFLPRIDFRPAPSVVLHHRTQLNDSPFRPKDLTGLTTDLIKSYFDKGSIQEAHTLFDEMTHRDVVAWTAMITGY TSCNHHSRAWKVFPRMLRDGVRPNAFTLSAVLKACKGLRALFCGELAHGLAVKIGARGSSIYVDNALMDMYATCCDSMDR ARMVFEDIVTKNAVSWTTLITGYTHRGDAFGGLRVFRQMVLEEGELSPFSFSIAVSACASVGSGILGKQLHAAVINHGFQ SNLPVMNSILDMYCRCRCASEAKQFFCEMTQKDTITWNTLIAGFETLDSKESLCIFSLMVSEGFSPNCFTFTSVIAACAN LAILYCGQQLHGATVCRGLDNSLELCNALIDMYAKCGNVADSHKIFSEMSCTNLVSWTSMMIGYGSHGHGKEAVELFNKM VGSGIKPDKIVFMAVLSACSHAGLVDEGLRYFRLMTSYYNVAPDRDIYGCVVDLLGRAGRVKEAYQLIENMPFKPDESIW VALLGACKAHKQQSLGKLAALRVLEMKPKKAGTYLLLSNIYASEGNWADSASLRKLMRSTKSKKEPGRSWIELKNQVHSF VVGDRFVSSNEKVCEVLKLLIIHLKDAGYVLDLDCSVHDLEDET
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 31 | 116 | 86 | 1.4E-107 | – | |
| Gene3D | 37 | 122 | 86 | 7.1E-18 | ||
| ProSiteProfiles | 38 | 68 | 31 | 6.029 | ||
| TIGRFAM | 45 | 71 | 27 | 0.0031 | ||
| Pfam | 69 | 115 | 47 | 2.3E-12 | ||
| ProSiteProfiles | 69 | 103 | 35 | 11.751 | ||
| TIGRFAM | 71 | 105 | 35 | 7.2E-5 | ||
| Gene3D | 125 | 227 | 103 | 5.4E-11 | ||
| PANTHER | 130 | 222 | 93 | 1.4E-107 | – | |
| ProSiteProfiles | 140 | 171 | 32 | 5.568 | ||
| ProSiteProfiles | 172 | 206 | 35 | 8.374 | ||
| TIGRFAM | 174 | 202 | 29 | 0.0013 | ||
| Pfam | 174 | 200 | 27 | 8.7E-4 | ||
| ProSiteProfiles | 207 | 241 | 35 | 5.842 | ||
| PANTHER | 211 | 321 | 111 | 1.4E-107 | – | |
| Gene3D | 228 | 324 | 97 | 2.0E-18 | ||
| ProSiteProfiles | 242 | 276 | 35 | 8.67 | ||
| Pfam | 272 | 319 | 48 | 1.4E-7 | ||
| PANTHER | 327 | 537 | 211 | 1.4E-107 | – | |
| Gene3D | 330 | 417 | 88 | 3.5E-21 | ||
| ProSiteProfiles | 342 | 372 | 31 | 8.144 | ||
| TIGRFAM | 345 | 373 | 29 | 4.2E-4 | ||
| Pfam | 346 | 369 | 24 | 0.0023 | ||
| ProSiteProfiles | 373 | 407 | 35 | 12.112 | ||
| Pfam | 373 | 420 | 48 | 1.2E-8 | ||
| TIGRFAM | 375 | 408 | 34 | 3.9E-8 | ||
| ProSiteProfiles | 408 | 438 | 31 | 7.662 | ||
| TIGRFAM | 411 | 444 | 34 | 0.0025 | ||
| Gene3D | 418 | 576 | 159 | 1.7E-20 | ||
| ProSiteProfiles | 444 | 474 | 31 | 8.035 | ||
| Pfam | 447 | 471 | 25 | 0.11 | ||
| ProSiteProfiles | 510 | 544 | 35 | 6.051 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0232100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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