Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi5g1v0232500
Transcript ID	LotjaGi5g1v0232500.1
Related isoforms 1	LotjaGi5g1v0232500.2
Lotus japonicus genome version	Gifu v1.2
Description	ABC(ATP-binding) family transporter; TAIR: AT5G02270.1 non-intrinsic ABC protein 9; Swiss-Prot: sp\|Q9LZ98\|AB20I_ARATH ABC transporter I family member 20; TrEMBL-Plants: tr\|G7IAA4\|G7IAA4_MEDTR ABC transporter I family protein; Found in the gene: LotjaGi5g1v0232500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:53993437..53999652) extracted from Lotus japonicus Gifu genome v1.2.

GAGAGCGCGCGTTTGCGCTTGTGAGCGAGAAACGGCCACGCTTCATCTTCTCCAAACTCCCTCTCTACAAATTCATTCAG AATGGGCCTGTTCCAATGTGACTGAAGCTACCAGAGGCGCACACAGAGAGAGAGAGAGAGAGTGAAAGCGATTTCAATTT GGATTTTCTGTTTCATTGAAGGTTGATTAAGATGAGTATCAATGGCAATTCAGTTACAGATGCAACGGTTGTGATCAGAG ATCTGAGATTCACATACCCTGGCATCGACGGCCATCCACCGCCGGGTTCAACTCCGCTCATTCAAGACTTCTGCCTCACT CTCCATTCCGGCGATCGCTGCCTTCTCGTCGGATCCAATGGCGCTGGTTGGTTCTCTCTCTCTCCCTCTCTCTCTCTCTT GAAGCTTTTACTCTTTTTTGTTTTTTTTTTATTGATTTGTGTGTTTTTGTTTTGGTTTCTAGGGAAGACGACGATCCTGA AGATATTGGGAGGGAAACACATGGTGGAGCCGGAAATGGTTCGTGTGCTCGGAAGATCGGCTTTTCACGATACCGGTTTG TCGTCTTCTGGTGATCTCTGTTATCTTGGTGGTGAGGTCAGTGAGGTTCCTCCTTCATTTTTTTTTATATTTTTCCATTG ATTTTGTGATATTCTTAGAGCAATTATAGGAAAAAAATTGAAAATGATGATGCTATCTGCATGTTTAATCAGCTTATTTT TGTTCATGATCAATTGTAGAAACTAGAAACATTCACTAACATGCTATAAGTAATAGCCATCTCAAAATTTCCAAAAGCTC TCTTATCTAATAATAATCATAAGTGTCGGGGTTCGAACCGAGGAGGGGTGGGTAGCTCACATGGTTGAGCTAAGGGTAAT TGTAGGTGTAGGTGAAGGGCCATGGTTCGTACGCTGAGGAGGGATAATTTGTACTAATTTACTAACAACTGATATTTGCC TATTAAAAAAAATCACAAGTGTCTTAAAGAAAACTTTCTTCATAAGTAAGTACATTTAAGGGGGTTTTCATTACTTAGAA TAGAAATCAATAACTGATCTCATTTGAGAAGCTCTAATAAACTAGATGGCAAGCCAAATTATCAGGGAAATTATGTTGTG ATTCTTACTTTTTTGGTTTCTGTCTGAATGGTAACTGTTAGTGATTGGTTCCGTCATTTTATCTTGCTAAATTTAAATTA ACCCAAAAGATCAATCAAATCATGTAGAGACAGATTAATCATGTCATGATTTAGATATTGTAGAGGACCTGGTGTAATTA GGGATCCATGGTTGTGTTAACTATTTGTAGTGGAAGCGTGAACGCCATAAAGAGTGATCTGCTCTCTATCTGATGAGTAA TATGTTTTCAAATAACAAAAGCCCAATATAGACTAATTGATTGATTAATGTTAATCTACACGACCGAAATAGAGATATAT CTAAATAATACAACAAAATAATCAGGGAATTTATGTTGTGATTATTATTTGTTTGGCTTCTGTCTTAATGGAAACTGTTA GTGATTGGTTCCATCATTTTATTTGGGGTTGGGGCACAGTGGAGGCGGGATGTTGCTTTTGCAGGTTTTGGGGTTTCGAT TCAAATGGACATTTCTGCAGAGAAAATGATATTTGGTGTAGGTGGGATTAACCCAGAAAGAAGAGCGGAGCTAATTAAGG TTGGATGAATCTTTTCTCCATCTTTTATAGCTTAACAACACGGTTGCTTGGTTTGTATGTCAGCATGCATTTTATGCTTT CATTTTCCCTCTTTATCCACTGTTGTTTTGTGATGGGATTGACTTTTTTTATGGATTTGTTTTGTGTATATGGGTTGTAC ATCAGCACATGCATGAGGTTTCTTTTTATACCGGATATAATTTATGTAATGAAATATAAAGGAACTTACTGGGGTCGAAA AAGGTGAACCTAAATGCATTTTTTTGATACCCTCATCTATATCCATGAATTAAACATCGGTAGATGACATAAAGGCTGGA CTCCCCCATGCATGGCTATTTTCTGGAATGTTTCTTTAGTTATGCATATGTAGTTGTCTCAGGAAAATCATTGCTTAATT TCTGTTGTGCTGTTCAACTGGGAAGGTATTAGGTATCGATCTTTCCTGGAGATTGCATAAAGTATCTGATGGTCAAAGAA GAAGAGTGCAAATTTGTATGGGTCTACTTAAACCATTCAAGGTATGATAATCTTTTGTTGATGTATTGAGAAGTCCTTAC AGCTTCTTCCTTTTTACAATGCAATATATTCTTCTATTTGCGGCTTCATTGCACTAATGAATTAGGATTGCTCCTTGTCC TTGTTTATCTAGGTTCTTCTTCTGGATGAGATAACAGTTGACCTTGATGTTCTAGCGAGAGCTGATCTTCTGAGTTTTCT AAAAAAGGAATGTGACGAGAGGGGTGCCACTATTATCTATGCAACTCACATATTTGACGGTCTTGAAGATTGGCCCACAC ATATGGTGTGTTGAATTTCCATCCTGAACTATTTTATGTCAATATTTGGCATAACCCTTAGTCTTTTTTGGGTTCTCTTG TCAGGTTTATGTAGCCCACGGAAAGCTCCAACTAGCTATGCCTATGGACAAAGTCAAAGAAAATAGCAAATTGTCACTGA TGGTTTGTTTTGTTCCTAATCTTGGCTTAAAAAGCTTATGATCAATTACTTGTTTGTGTCACCAATTATATCTTACTTAT CTTTAGTAATATGAGCGCTGGTTGACTGTTAAGCCTTGAATAGCATCAAATGGTTATGGAATGAAATGAACAGGATTATA GAATATGTAGCGAAGCTGTGAAACTGTGCAAATGTGCAATGTTACAATTTAACAACAAAGAAGATAATATAGTTAATTGG TTCTTAATGTGCAGAGAACAGTAGAAAGTTGGCTGAGGAAAGAACGAGATGAAGATAGAAGAAAAAGAAAAGAGAGGAAG GATGCTGGCCTTCCTGAATTTGAAAAGCAAGTTGAGGGAAGCCGTGTAGCAGGAGGGGATCCAGGGCGTGCTGCTGTTCG AGCAGTGAATAATGGCTGGGCAGCAGGACGATTGCATTCCACCATTGCTGGTGAAGAAAACTTTCTACTAAGCTCTAACC GAGTATTGAGATAGTAGACAAGTATCAAATTTTACCAGTGCTTTTGTTGTTTATTTTTATGAGCTTAAAATAAATTTTAT TTGCCAATGCGTAATTATATTCCTCTGTAATATGGAAAGGATCACATGTTATGCAGTAAAAATCAAAGCTAATGTATTTA CCCTTGATAGTGAGGAAAAGCATACCCCAATATTCATTAACTTACACCAAGATACCAATTTATGTAGACATCATCATGAA AAAAGATCTATCAAGGGAAGATTTTTCTAAAATATCAGTCGTTGATTTTATTTTATACTTATGCTGATTGTTTCAATTTA TGAGCATCCGGATCATATAAAGAAAAAATGAAAATAACCTTATTACTAAGCAGGGTAAAATTCAAATTGGACCCGTTTCC ACCAGATATCAAAGGGATATTATTTAAGATGATATATGTGTGTCCTCTCTTTTTAATCTATGCTCTACATATATCCCACG GCTTGGGGATCATCACTCTCAAATGTGACACAAGAATAAAAAATTCACCAACAACAGAAATTTCTTATGCAAATGGTAGC TCAATACTCCTCATGCTCTTCATCTGTATTGAATTCTCTACCTTCCACTTCCTCCTTCTCACGGCTTCAAGCACAAGCAT GGTTTGGAAGATTATAGGGTTGCAATTCCAGGTCATTCATGTCATCCTTTTCATCATCCGTGATTGTTTCTTGCATGGTG CCACTTTTAATCTCCTTGCTCTTTCCCCACAGAGCAGAATAGAGCCCAATTACTATCACGACAGAACCTATGGCACTGAA CCAAATCCAAACATGGAATTAATTAAAAACATACCAACTTGTTAAGAACCATAATTCATGTACAATTTTCATTCACCAGG CACAAAAAAATAAAATCAAAGGAAATTTCTTACGTGCCCATGTATAATTTCTCGTGAAGCACAGCCCAGCTTATAACAGC AGTGATGACAAGAACCAAAGGGGAGAATATAGAGGCATAAAGAGCACCTTTCCTCTCAATGGTCCATGACATGAGAGCAT ACGTTAGCCCCGTCGAAATAATTCCCTGAAACCAGCATTACGATTCAACTATAGAAGGATTTTCAAACACGCACTTATGC AATTGATGAAACATATATATCGTGTTACCGCGTAAAGTGCAGAGGTGAGTCTCATAGTGTTGTGAAGTGACCAAGCTGCG AGATTGTGTTGAAAGCCCACTGCAATGACCACGCTCTGAATACTTGCCAAGAAACACATGTAGAAGCTGCTTGTGTAAGG AGCAGGGAAGTTCCTGCTAATGTTTGCCTGAACACTCAAAACAAGTGTATATATTAATCTAACAAATTAATGTATTAAGT GAAAACGAAATAAATATAATAAAGAGTTTTCTAAATTATTCATGTGCACTTACTTGAACTACGAACCATATAGCCCAAAC AAAAGTACTAGCAATTACGGCAAGCGGGCCTAAAAGCCCGATTGATCCGCCACCGGAGGAGGTTGTTCCATTCAATTTAT CTGCATATCCCCAATGAATCTTTGACTCTCCTAGATCAAGAACTTTTCCATTGTAAAATGATAGAAGCAGGGCTCCTCCC ACACTCAGCAATGTGCCTAACACCTTAGCTATCCCGGCCTTCGTCTTAAAGCTCAAATACTCTTGTCTATCCATGGAAAA ACAAAATTTATCAATTACTATATAGGTTTGAATCATCGATATGCTTTTATTTTATGATAATCAATTCTGATTTTTAAAAA CTACTCATCAAAAGAGTTTTTCACCAAAATTGACTTTGGCTTTAGAAACAATAGAATGTACGCTAAGTATTGGGGTAGTG TATTTGGTCCTTGCTTACCTGAAGAGGACAGCAAGGATGATTGTGAAAGCTGGTAGCAAATTTGTCAGTGCACATGTAAT TGTAGCGGTTGTGTATTTAAGCCCCACGAAGTACAACACTTGATTTGCTGTAACTCTGCACTCTTGCTCAAGTTAATTAG TAATTAATTAAAGTGATGGTTTAGTTGAGCAAAATATGAATAAAGATTACATGAGATAGTCATGACCACATGGATCAAAG ATCGAACTCATGACCACATGCTTAAGAGGTCCGACCTGCTTCTATTTTAACGGTTTGACAAGAGAGAATGTTGCAACTTG AGCAAATAAAAAGGGTAGAAGGAAAACAAAAAATAAAGCTTACCCTGTTAAGGAAGATAGTAATATCTGGAGAAAAATCG GCATTGTCATCCGAGGAGCCGTACTTCTGTAGAGGAGAGAAACAAAAAATGAACGTGTAAATCATGATGATATGTCATCC CTTGTGATGATAGTTTTATTTCTTGTTTAGCTTCACGTGTTCTGGCTTTTTTTCATGGGTGAAAAAGTGTAAATCAAGAC GCAATTACAGTTTTCTAATTTCTGTATTCCTTCACGCAATCAGGGTGTTTATGATCCCATGTTTTCAGAAAAAGTATTCA AGGGCAATTTCTCAAGAGTACTGATTAAGGGGCTGTATGCACAAAAGAAGAATGAGCGAAACGTATAGTTCCACATGTCT TTGATTAAGCTTTGACTTCCCAATCTTGTTAATCATCACAAAGCATTCATTAGTTATCCTAATAATCAGATTTAAGTCAG GTAAAGTAAATCATCATAATCATTCATTAATAAATCAACAGTTAAAATTGTAATCATATACTTACACATGCATAAGTCAT TCTTTTAACTTTTTTATATTCCTTAATATATATCATTTTCAAATATTTATGTAGTACTAAATATATTTTTCTTCCAAGTA TGCCCTTACTCCATTTTCAATTATCCAACACCTACAATCAAATTCTTAGTTTTTCAATAGGGTTAGATTAGGAAAATTGA CATTACTTTTGATAGATTTGAGAGAAAAAATTAACATTAACTAATTTTCATAAACTATGTGAGTTAAGTAAAAATGACCT ACAAATAGAAATAGAAGGAGTATTGTATATGTGATTTAAATCTCAACCGTTAATTTCTCAATCAACGGTTATAATTTATC GGTCTTTCACTTTAAATAAGCTAAATTCAGAATTCTTGTAATCAATACAATGTCTA

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0232500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTATCAATGGCAATTCAGTTACAGATGCAACGGTTGTGATCAGAGATCTGAGATTCACATACCCTGGCATCGACGG CCATCCACCGCCGGGTTCAACTCCGCTCATTCAAGACTTCTGCCTCACTCTCCATTCCGGCGATCGCTGCCTTCTCGTCG GATCCAATGGCGCTGGGAAGACGACGATCCTGAAGATATTGGGAGGGAAACACATGGTGGAGCCGGAAATGGTTCGTGTG CTCGGAAGATCGGCTTTTCACGATACCGGTTTGTCGTCTTCTGGTGATCTCTGTTATCTTGGTGGTGAGTGGAGGCGGGA TGTTGCTTTTGCAGGTTTTGGGGTTTCGATTCAAATGGACATTTCTGCAGAGAAAATGATATTTGGTGTAGGTGGGATTA ACCCAGAAAGAAGAGCGGAGCTAATTAAGGTATTAGGTATCGATCTTTCCTGGAGATTGCATAAAGTATCTGATGGTCAA AGAAGAAGAGTGCAAATTTGTATGGGTCTACTTAAACCATTCAAGGTTCTTCTTCTGGATGAGATAACAGTTGACCTTGA TGTTCTAGCGAGAGCTGATCTTCTGAGTTTTCTAAAAAAGGAATGTGACGAGAGGGGTGCCACTATTATCTATGCAACTC ACATATTTGACGGTCTTGAAGATTGGCCCACACATATGGTTTATGTAGCCCACGGAAAGCTCCAACTAGCTATGCCTATG GACAAAGTCAAAGAAAATAGCAAATTGTCACTGATGAGAACAGTAGAAAGTTGGCTGAGGAAAGAACGAGATGAAGATAG AAGAAAAAGAAAAGAGAGGAAGGATGCTGGCCTTCCTGAATTTGAAAAGCAAGTTGAGGGAAGCCGTGTAGCAGGAGGGG ATCCAGGGCGTGCTGCTGTTCGAGCAGTGAATAATGGCTGGGCAGCAGGACGATTGCATTCCACCATTGCTGGTGAAGAA AACTTTCTACTAAGCTCTAACCGAGTATTGAGATAG

Download CDS Sequence

Protein sequence (LotjaGi5g1v0232500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSINGNSVTDATVVIRDLRFTYPGIDGHPPPGSTPLIQDFCLTLHSGDRCLLVGSNGAGKTTILKILGGKHMVEPEMVRV LGRSAFHDTGLSSSGDLCYLGGEWRRDVAFAGFGVSIQMDISAEKMIFGVGGINPERRAELIKVLGIDLSWRLHKVSDGQ RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKECDERGATIIYATHIFDGLEDWPTHMVYVAHGKLQLAMPM DKVKENSKLSLMRTVESWLRKERDEDRRKRKERKDAGLPEFEKQVEGSRVAGGDPGRAAVRAVNNGWAAGRLHSTIAGEE NFLLSSNRVLR

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR12847:SF12 View details on PTHR12847:SF12 Search for proteins/transripts with this domain View external data on PTHR12847:SF12	6	331	326	2.3E-171	–
PANTHER	PTHR12847 View details on PTHR12847 Search for proteins/transripts with this domain View external data on PTHR12847	6	331	326	2.3E-171	–
Gene3D	G3DSA:3.40.50.300 View details on G3DSA:3.40.50.300 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.300	8	289	282	6.1E-34	–
SUPERFAMILY	SSF52540 View details on SSF52540 Search for proteins/transripts with this domain View external data on SSF52540	10	252	243	5.66E-33	IPR027417 Show description in modal box View details on IPR027417 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50893 View details on PS50893 Search for proteins/transripts with this domain View external data on PS50893	13	256	244	13.932	IPR003439 Show description in modal box View details on IPR003439 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00005 View details on PF00005 Search for proteins/transripts with this domain View external data on PF00005	39	183	145	3.1E-13	IPR003439 Show description in modal box View details on IPR003439 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00382 View details on SM00382 Search for proteins/transripts with this domain View external data on SM00382	46	233	188	8.6E-7	IPR003593 Show description in modal box View details on IPR003593 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	262	282	21	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	262	296	35	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005524 View details of GO:0005524 AmiGO InterPro QuickGO	Molecular function	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.	Subterm of View details of GO:0008144 View details of GO:0032559 View details of GO:0035639
GO:0016887 View details of GO:0016887 AmiGO InterPro QuickGO	Molecular function	ATPase activity	Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.	Subterm of View details of GO:0017111

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0232500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi5g1v0232500.1