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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0233400 |
| Transcript ID | LotjaGi5g1v0233400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT5G64320.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial; TrEMBL-Plants: tr|A0A0R0EIZ8|A0A0R0EIZ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0233400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54076477..54080209) extracted from Lotus japonicus Gifu genome v1.2.
GGAGTGGGAAATCCAAATCTCGAAGAATTGTTGCAAATTTGCTGTCTGCTCGTTTCTGTTTGTTGATAAACACAAAATTT GGTACGAACTTGCTCAACTCTCTCTAGTCGGATTCACTGATTGGCAACACATTCTTCTCAGGTCAGATTTCAAATTCTCC TTGTATGTCTTTCTCTTCATTTTCAATTTCTTCCCTGTGAACATTCCTTTACCCTTTGGAAATTGATGCTTGGTTCTATG GCAATAAAGCTCCAATCTTTGGCACATCCTAGTAGATTCCTCAAATGGGTATCTCTCTCTTCAAACAGTATTGAACATAT TTCAGAAACCATAGGAATTGTAAAGCCCAATGTTTCATCTGAATTCGACCAAAATATTAACTTTTTGAGTAAAAAGCTTG CCCCAGATAACTTAATCCGGGTTTTGAACCATACTAGTGATTTGAACTCAGCAGTGGAGATTTTCAAATGGGCTTCTCGC CAGAAGAGTTTTCGCCACACTGCCAATACATATTTTCAGATGATTTTGAAACTGGGTATTGCTGGGAATGTTGTGGAGAT GGGCCATTTTTGTCAGAGAATGGTGAAGGACAGAGTCCCGGGTGCCGAAGAAGCTCTTGTGTCATTGATTCACTCATTTG TCGAGCACCGTAGGGTTGAAGAAGCCATCGCGGTGTTAGGGAGCATGAATTTGGGTGGTTATAAGCCCCCACTTGAAGTT TTTAATGCTTTATTGGGTGCCCTTGTGGAAGGAAGTGGAGATTTTCAAAATGCCTTGTTTGTTTATAAGGAGATGGTGAA GGCAGGAATCCTGCCCACAGTTGACACTTTGAACTATTTGTTGGAGGTTTTGTTCGTTACCGATCGTGTTGACTTGGCTT TGGATCAATTTAGAAGAATGAACAATAAAGGATGTAGTCCAAATAGTAAGACCTTTGAGATTGTCATAAAGGGTCTCGTC GAAAATGGTCGAGTGGATGAATCTGTTTCTGTTTTAGAGCAAATGCTCAAACTCAATTGTCAACCAGAATTGAGTTTTTA TACCTGCACCATACCTCTCTTTTGCAGGGAAGATAAAGTAGAGGAGGGAGTACGATTGTTTAAAATGATGAAAGATTCTG ATTTTGTGCCAGATTCTTTCATTTATGAGGTTCTAGTTCGGTGCTTGTGCAAAAACTTGCAATTAGATCCCGCTGTATCC TTGATAAATGAGATAATAGAACATGGCATACATCTGAAACATGAGGTTTTTGTGGATATGGTAAATTGCTTCTGTGAATT AGGGAAGATAGATGAGGCTATAGTGTTTTTAGAAGATAAACAAGTTCATGAAACTGCTCCTTTCAATGCATTGCTTGAAG CTTGCTGCAATGCTGGTGAAGTTCTGGTAGCAAATGTTCTGCTTGAGAAAATGTCTGAGAGAAACATAGCTGATTGTCAA TCTTGGAATATTCTCATCAGGTGGCTTTGCGAGAATGGGAAGACTAAGAAAGCATATATACTTCTTGCAAGAATGATCAG ATCCTCAGTTATTCTTGACCATGAGACATATTCTGCTCTTGTAGTTGGCAACTGTAGATTGAGCAGATATGTAGAAGCAA TGCAACTATTTCATCAAATTTATGCCAGATGCTGGCTATTAGATTTTGCCTCTTATTCTGAACTAGTTGGTGGCCTCTGT GACATCGAACATTGTCAAGATGCCATTGAAGTGTTTTACTATATGTCAATGAAGAAATGCTCTCTTCATTCCTTATCCTT CTACAAGTTGGTAAAATGTGTATGTGACTCAGGACAGGTCAACAAAGCCATAAGAATATGGCAATTAGCTTATTATTGTG GTATTTCTTGCTGCATTGCCACTTGCACTACTGTCATGCGTGAGTTGTCTAAATCGGGCAAGGCAAAAGATCTGTTAGCA TTCCTCTCGCAAATGTTAATTATGGGCAGCAATCTTGACGTGGAATCACATTGTATCCTTATTAGTAGCATGAGTAAGCA AAATCATGTAAAGGAATGTGTTTTGTTGTTCAATATGATGGTCAATGAAGGTCTCATACCTGATCCAGACATATTATTTG ATCAACTATCATTCATAGCCAACCGTTCTCAGTTATCCATGATTTATAGTGCGATTGAAAAACTTTCTGATTGTGAAGTT TTGGATTCAGCAATATATAACTTACTGATAACTGGCCTGTGGAAAGAGGGTAAGGAATGTGAGGCTCATCGATTACTGGA TTTGATGTTAGAAAAGGGTTGGCTTCCTGATACAACCACTCATAAGTTGTTGATTGGATCCGATGTTAGAGGTGGAAGGA GTCAAGCAATATTGTTTGATAATTCTACGTTACAAGACTCTGTTAGCAATATACTTGCAGAAGGCTTTGGAGATTCATGA AACTTAACCATTCCATGAGAAGAATCTTGATTGCTTAACACGCTGCTTCTATTGATTGGTGCTCTGTCCATCAACGATTG TTTATTCAGCACCTAGTATTTTAGCAGTGAAAATTATTGTCATACACCAGATATTCTTTCAGGGGATGCAGCTGGCAGAT GTTAGCTTTGTCAAATTTGTTCCCCATCAGTGTACTTGGTAAGATGTGGACTAACTTCTACGATTTGAATATCTATTCAC TTGTAGGATAGATTTACGATTTTCTTACAAATCTATATGGCATGCATGCTTTGTTGATGAAATTAAATGATCTCAAAGTG TGTTTGGCTATCCATTTGCACTTGCATAAGTTCAAACGGATAACCAAAGACCCCCAAAGTCAGTCAAGAGTTTATTTTGT TGCATTTTTCGCTTATTACAAGCTGATGCTAACCATAGCTGCAGTTCAAGAGGGTTTAGATTCTTTTCGACAACACATGC ATAATTAAAAGCATGATCTTCTATTTTCTTCTTTTGTTGATTTGCAGGAACTAACCTCGTTGGTTTATATTTGGCAGATG GCTTGCATTCTCCAATAAATATGATAAATTTACAACGCTACCAAGTGCTATTTAAAAGAGAATATTTTTGGGTTGTTGCT GCCATTTTGGTTTACTGCCTTTTACCTTATTCAGGGTTTTGCCCCAAGCTATATTCTTATTCTTTATGCCTAGTGGATAT TAGCTGAAGGGGATGAGAAGATTGCTTTCAAATTGCTATCAAGCTTCTGTTGTTTGTTGATTCAAGCTTATGTATATTAG CATGTCAAGTTGACCATTGCTCATCGGTCACCGTACACACCTTTCAGCGATATAACCTATAGGGAGAGACATACAAGAGG GATGTATTGGTTCCATTGACAACACCATGGATAATATATATCTTATAGCCAACTCTGAGCTCTTTCCGGTAGCTAGTCTC GCCTCGGGTATTCTTTCCTCCCATCCATCATTCCAACAACGCATTCAATAGCATAGCTAATGGCTCACCCTATCTTTGCA TCACAATTGTTGGAGGAGGTTTATCAGTCATTGAAAGCCCTGTTGCACCTTGTCGCACCACAAGTCTTTGCCTTGCCAAA CGTAGCTCAACCATTTTTGTGAGCACCAAGAGCAGGAATAGCTAGTAAAACTACTTTTTAAAAGGATTACATCTGAAACT GTATATGTTCTTCATTTATAAAATATGCTATGATTTTACTTGATTGCATGACAGTGCTCTGTTTGATGCTATATCCATCA TTTTCTTTTCCTGCATAGTCCATATGATCAATCGAGACATTGAAAGCAACTCA
CDS sequence (LotjaGi5g1v0233400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGGTTCTATGGCAATAAAGCTCCAATCTTTGGCACATCCTAGTAGATTCCTCAAATGGGTATCTCTCTCTTCAAA CAGTATTGAACATATTTCAGAAACCATAGGAATTGTAAAGCCCAATGTTTCATCTGAATTCGACCAAAATATTAACTTTT TGAGTAAAAAGCTTGCCCCAGATAACTTAATCCGGGTTTTGAACCATACTAGTGATTTGAACTCAGCAGTGGAGATTTTC AAATGGGCTTCTCGCCAGAAGAGTTTTCGCCACACTGCCAATACATATTTTCAGATGATTTTGAAACTGGGTATTGCTGG GAATGTTGTGGAGATGGGCCATTTTTGTCAGAGAATGGTGAAGGACAGAGTCCCGGGTGCCGAAGAAGCTCTTGTGTCAT TGATTCACTCATTTGTCGAGCACCGTAGGGTTGAAGAAGCCATCGCGGTGTTAGGGAGCATGAATTTGGGTGGTTATAAG CCCCCACTTGAAGTTTTTAATGCTTTATTGGGTGCCCTTGTGGAAGGAAGTGGAGATTTTCAAAATGCCTTGTTTGTTTA TAAGGAGATGGTGAAGGCAGGAATCCTGCCCACAGTTGACACTTTGAACTATTTGTTGGAGGTTTTGTTCGTTACCGATC GTGTTGACTTGGCTTTGGATCAATTTAGAAGAATGAACAATAAAGGATGTAGTCCAAATAGTAAGACCTTTGAGATTGTC ATAAAGGGTCTCGTCGAAAATGGTCGAGTGGATGAATCTGTTTCTGTTTTAGAGCAAATGCTCAAACTCAATTGTCAACC AGAATTGAGTTTTTATACCTGCACCATACCTCTCTTTTGCAGGGAAGATAAAGTAGAGGAGGGAGTACGATTGTTTAAAA TGATGAAAGATTCTGATTTTGTGCCAGATTCTTTCATTTATGAGGTTCTAGTTCGGTGCTTGTGCAAAAACTTGCAATTA GATCCCGCTGTATCCTTGATAAATGAGATAATAGAACATGGCATACATCTGAAACATGAGGTTTTTGTGGATATGGTAAA TTGCTTCTGTGAATTAGGGAAGATAGATGAGGCTATAGTGTTTTTAGAAGATAAACAAGTTCATGAAACTGCTCCTTTCA ATGCATTGCTTGAAGCTTGCTGCAATGCTGGTGAAGTTCTGGTAGCAAATGTTCTGCTTGAGAAAATGTCTGAGAGAAAC ATAGCTGATTGTCAATCTTGGAATATTCTCATCAGGTGGCTTTGCGAGAATGGGAAGACTAAGAAAGCATATATACTTCT TGCAAGAATGATCAGATCCTCAGTTATTCTTGACCATGAGACATATTCTGCTCTTGTAGTTGGCAACTGTAGATTGAGCA GATATGTAGAAGCAATGCAACTATTTCATCAAATTTATGCCAGATGCTGGCTATTAGATTTTGCCTCTTATTCTGAACTA GTTGGTGGCCTCTGTGACATCGAACATTGTCAAGATGCCATTGAAGTGTTTTACTATATGTCAATGAAGAAATGCTCTCT TCATTCCTTATCCTTCTACAAGTTGGTAAAATGTGTATGTGACTCAGGACAGGTCAACAAAGCCATAAGAATATGGCAAT TAGCTTATTATTGTGGTATTTCTTGCTGCATTGCCACTTGCACTACTGTCATGCGTGAGTTGTCTAAATCGGGCAAGGCA AAAGATCTGTTAGCATTCCTCTCGCAAATGTTAATTATGGGCAGCAATCTTGACGTGGAATCACATTGTATCCTTATTAG TAGCATGAGTAAGCAAAATCATGTAAAGGAATGTGTTTTGTTGTTCAATATGATGGTCAATGAAGGTCTCATACCTGATC CAGACATATTATTTGATCAACTATCATTCATAGCCAACCGTTCTCAGTTATCCATGATTTATAGTGCGATTGAAAAACTT TCTGATTGTGAAGTTTTGGATTCAGCAATATATAACTTACTGATAACTGGCCTGTGGAAAGAGGGTAAGGAATGTGAGGC TCATCGATTACTGGATTTGATGTTAGAAAAGGGTTGGCTTCCTGATACAACCACTCATAAGTTGTTGATTGGATCCGATG TTAGAGGTGGAAGGAGTCAAGCAATATTGTTTGATAATTCTACGTTACAAGACTCTGTTAGCAATATACTTGCAGAAGGC TTTGGAGATTCATGA
Protein sequence (LotjaGi5g1v0233400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGSMAIKLQSLAHPSRFLKWVSLSSNSIEHISETIGIVKPNVSSEFDQNINFLSKKLAPDNLIRVLNHTSDLNSAVEIF KWASRQKSFRHTANTYFQMILKLGIAGNVVEMGHFCQRMVKDRVPGAEEALVSLIHSFVEHRRVEEAIAVLGSMNLGGYK PPLEVFNALLGALVEGSGDFQNALFVYKEMVKAGILPTVDTLNYLLEVLFVTDRVDLALDQFRRMNNKGCSPNSKTFEIV IKGLVENGRVDESVSVLEQMLKLNCQPELSFYTCTIPLFCREDKVEEGVRLFKMMKDSDFVPDSFIYEVLVRCLCKNLQL DPAVSLINEIIEHGIHLKHEVFVDMVNCFCELGKIDEAIVFLEDKQVHETAPFNALLEACCNAGEVLVANVLLEKMSERN IADCQSWNILIRWLCENGKTKKAYILLARMIRSSVILDHETYSALVVGNCRLSRYVEAMQLFHQIYARCWLLDFASYSEL VGGLCDIEHCQDAIEVFYYMSMKKCSLHSLSFYKLVKCVCDSGQVNKAIRIWQLAYYCGISCCIATCTTVMRELSKSGKA KDLLAFLSQMLIMGSNLDVESHCILISSMSKQNHVKECVLLFNMMVNEGLIPDPDILFDQLSFIANRSQLSMIYSAIEKL SDCEVLDSAIYNLLITGLWKEGKECEAHRLLDLMLEKGWLPDTTTHKLLIGSDVRGGRSQAILFDNSTLQDSVSNILAEG FGDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 47 | 177 | 131 | 4.9E-16 | ||
| PANTHER | 62 | 273 | 212 | 4.2E-88 | – | |
| SUPERFAMILY | 67 | 267 | 201 | 6.28E-5 | – | |
| ProSiteProfiles | 92 | 126 | 35 | 5.141 | ||
| ProSiteProfiles | 127 | 161 | 35 | 8.353 | ||
| Pfam | 133 | 154 | 22 | 0.41 | ||
| ProSiteProfiles | 162 | 197 | 36 | 9.92 | ||
| ProSiteProfiles | 198 | 232 | 35 | 8.802 | ||
| Pfam | 201 | 245 | 45 | 8.1E-8 | ||
| Gene3D | 209 | 368 | 160 | 1.9E-32 | ||
| ProSiteProfiles | 233 | 267 | 35 | 11.433 | ||
| TIGRFAM | 236 | 267 | 32 | 3.6E-6 | ||
| PANTHER | 251 | 363 | 113 | 4.2E-88 | – | |
| ProSiteProfiles | 268 | 302 | 35 | 9.624 | ||
| TIGRFAM | 276 | 304 | 29 | 4.5E-5 | ||
| Pfam | 279 | 299 | 21 | 0.045 | ||
| ProSiteProfiles | 303 | 337 | 35 | 9.383 | ||
| Pfam | 306 | 335 | 30 | 0.039 | ||
| ProSiteProfiles | 338 | 368 | 31 | 5.897 | ||
| Gene3D | 369 | 469 | 101 | 1.6E-19 | ||
| ProSiteProfiles | 369 | 399 | 31 | 7.739 | ||
| TIGRFAM | 373 | 401 | 29 | 0.003 | ||
| PANTHER | 373 | 530 | 158 | 4.2E-88 | – | |
| Pfam | 373 | 401 | 29 | 0.024 | ||
| ProSiteProfiles | 403 | 437 | 35 | 9.843 | ||
| Pfam | 406 | 451 | 46 | 5.1E-8 | ||
| TIGRFAM | 406 | 438 | 33 | 2.4E-4 | ||
| ProSiteProfiles | 438 | 472 | 35 | 7.947 | ||
| Gene3D | 470 | 536 | 67 | 2.1E-5 | ||
| ProSiteProfiles | 473 | 507 | 35 | 7.969 | ||
| ProSiteProfiles | 508 | 542 | 35 | 6.314 | ||
| PANTHER | 511 | 692 | 182 | 4.2E-88 | – | |
| ProSiteProfiles | 543 | 577 | 35 | 6.993 | ||
| ProSiteProfiles | 578 | 612 | 35 | 9.328 | ||
| TIGRFAM | 581 | 613 | 33 | 2.9E-5 | ||
| Pfam | 583 | 610 | 28 | 0.025 | ||
| ProSiteProfiles | 647 | 681 | 35 | 10.83 | ||
| Pfam | 650 | 678 | 29 | 0.041 | ||
| TIGRFAM | 650 | 683 | 34 | 0.0016 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0233400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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