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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0235600 |
| Transcript ID | LotjaGi5g1v0235600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G03560.2 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SZL5|PP356_ARATH Pentatricopeptide repeat-containing protein At4g38150; TrEMBL-Plants: tr|A0A0L9TXT2|A0A0L9TXT2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0235600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54375453..54377637) extracted from Lotus japonicus Gifu genome v1.2.
CTAGGACACTTGTATTTTTAAAAAACATATAATTTTTAAGAGTGAACCATGAAAGAAATTGCTAAGTTATCACTTGAGAA CCAGAGTCAAAGACGTTTTCAATGATGATGATCAATAAATGAGTGAAAACTAGTAGATATATTAATTCTTTTTGTAGACA ATTTCCTATGCAGTGTCCCCGTGTCTTGCCTTTTTTTTACTTAAGCCGTGTTGCGATGCCGGTGTCGAGTCGTGTCCAAG TGTCCGTGTTAGAATCCGTACTTCATAGCTTACCGAGGATTGTATCCATTGGTAATGTTTTTAACTTTTGATTGAACATG AGATGTGTTTTTTGTATTGAGTATGTAAGCCCAGCCCACAAACATAAAATGATTCTCACTTGGTGCCACTCTCAGAATTT TCTGGAGAATCAACTCCCTTTCCATATCCCCTGAGACTGATAACCCAGCACCCAGAGCACAAGGAAGAGGGTACAGAAGC TATAGGTATCAGTCCATGGCTTTGCATAGCAGATGCACAATCTCAGCAATATCTCGCGCTTTATCTCTCACCAACTCCAT CTCCAACACTCACACTCCACTCTTCTTCCGCACTCTCCTCCAATGCACATTCTCCACATCACTCTCACCTCCTTCATCTG CAACTGCACCCCTCAGAGCTTCAAACTTCATCACCATTTACCGGCATTTCATCTCCACCAAAAAGGGTATCGACACCAAG GTCAATTTCTCCCTCTCCGATTCCGACGACAGCGACGACGAAAATAGCGCCACCGCCACCGCCACCCCTCAACCCGCCGA CAAGAGCAAGAACCTCCCACCCCCTTACGACCCCTTCAGCAAGAAGCCAGCGATAGAAGACCCTGAAGACCCCAAGGACT TGCAGGAGATTTTCCATAACATGAGGAGTGGTGATGGGTTGTTCAACCATGCAGTCAAGATGTTCGACGCTTTGTCCAAA GAGGGTCTGACCCATGAAGCGCTGGAGCTTTTCGGTCAGATTAAGGACAAGGGTCAGATGCCCGACGTGGTGGCTCACAC CGCCGTTCTCGAGGCCTATGCCGGCGCGGGGAAGTCGAAGGAGGCTCTCAAGGTTTTCATGCGGATGCTTGCTTCTGGGG TGTCTCCGAATGCTTACACCTACGCGGTTCTTATAAGGGTACTTGTGAAAGATGCTAAGTTCTTGAAGGATGCTAAGAAG TATGTTTTGGAAATGATGGATAAAGGGATGAGACCTAATGCTGAGACGTACACCGCCGTGTTTAAGGGGTTGGTTAGGGA GGAGAAGCTGGATGAGGCTGTGCAGTTGCTGGAGCAAATGAAGGCTAAAGGGTTTGTTCCTGATGAGAAGGCTGTTGGGG AGGTTCTGGCTGATAAAAGGGGTTCTGTTTTCAGAAATGTCATGAACATCCTTTTTGGCAACTAGCTAAAGCTAGTTAAC TCTCAAGAGTGTGGTGTGGAAGATTTGGAATATGGAATTTTGGGGTGACTTTTGACAATGAAGTGTTTGTTCACTAGTTC AGTTGCCTTCAACCAAGTTTCATGTTAACAGAACATTTAAACTCCTTTCACATTTGAGCTCCTCTCAAAGATATCCAAAC CTACCAGAAACTTGCACATTTAGTTTGTGACTTGTTTTATATATATGGATTTTGTTGGTTATGCGTTTCCCTTGGATACA TTGAAGCAGATATTCACTAAATGTGTGATTGCATTAGTGTTTTTAATATTGGAAACGAGTGATTCATGTTTAGATACATT TCTCAAAAGTGATTTCTTTAATAGTGGTTTATAATTAATTCTCAGCCTCGCTTGTATTATAATTTTGCCGCTGAAGCTTG ACTTGTCGCTTGTCACAGACCAAATTTTAAAGCATGTCATGTGGCCTATTATAGGTCTAGCCTAGCCTCAAGCATGTTTA CAAGCATATAACCGAGTAATGATATATACACACCTCATTTTTTAAACACTCCATTTTCACCTCTTTTTATTTCTATCTCT TTCATCTTATCATTTATCACATCTCATATTTTCTCTCTCTTACTTTTTCTTTTCTTCCTATCTCTCTCACCATTCCACCT CTCCACCTCAAAAGAGAGGTGGGGATGAAACATTACCCATATTTTACATAAAAATTGACATCTTAAAGAGACCATAGATA GGCCAGTGGGCTATATAAGTTTTTC
CDS sequence (LotjaGi5g1v0235600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTGCATAGCAGATGCACAATCTCAGCAATATCTCGCGCTTTATCTCTCACCAACTCCATCTCCAACACTCACAC TCCACTCTTCTTCCGCACTCTCCTCCAATGCACATTCTCCACATCACTCTCACCTCCTTCATCTGCAACTGCACCCCTCA GAGCTTCAAACTTCATCACCATTTACCGGCATTTCATCTCCACCAAAAAGGGTATCGACACCAAGGTCAATTTCTCCCTC TCCGATTCCGACGACAGCGACGACGAAAATAGCGCCACCGCCACCGCCACCCCTCAACCCGCCGACAAGAGCAAGAACCT CCCACCCCCTTACGACCCCTTCAGCAAGAAGCCAGCGATAGAAGACCCTGAAGACCCCAAGGACTTGCAGGAGATTTTCC ATAACATGAGGAGTGGTGATGGGTTGTTCAACCATGCAGTCAAGATGTTCGACGCTTTGTCCAAAGAGGGTCTGACCCAT GAAGCGCTGGAGCTTTTCGGTCAGATTAAGGACAAGGGTCAGATGCCCGACGTGGTGGCTCACACCGCCGTTCTCGAGGC CTATGCCGGCGCGGGGAAGTCGAAGGAGGCTCTCAAGGTTTTCATGCGGATGCTTGCTTCTGGGGTGTCTCCGAATGCTT ACACCTACGCGGTTCTTATAAGGGTACTTGTGAAAGATGCTAAGTTCTTGAAGGATGCTAAGAAGTATGTTTTGGAAATG ATGGATAAAGGGATGAGACCTAATGCTGAGACGTACACCGCCGTGTTTAAGGGGTTGGTTAGGGAGGAGAAGCTGGATGA GGCTGTGCAGTTGCTGGAGCAAATGAAGGCTAAAGGGTTTGTTCCTGATGAGAAGGCTGTTGGGGAGGTTCTGGCTGATA AAAGGGGTTCTGTTTTCAGAAATGTCATGAACATCCTTTTTGGCAACTAG
Protein sequence (LotjaGi5g1v0235600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALHSRCTISAISRALSLTNSISNTHTPLFFRTLLQCTFSTSLSPPSSATAPLRASNFITIYRHFISTKKGIDTKVNFSL SDSDDSDDENSATATATPQPADKSKNLPPPYDPFSKKPAIEDPEDPKDLQEIFHNMRSGDGLFNHAVKMFDALSKEGLTH EALELFGQIKDKGQMPDVVAHTAVLEAYAGAGKSKEALKVFMRMLASGVSPNAYTYAVLIRVLVKDAKFLKDAKKYVLEM MDKGMRPNAETYTAVFKGLVREEKLDEAVQLLEQMKAKGFVPDEKAVGEVLADKRGSVFRNVMNILFGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| MobiDBLite | 81 | 125 | 45 | - | – | |
| Gene3D | 120 | 228 | 109 | 1.7E-22 | ||
| ProSiteProfiles | 142 | 176 | 35 | 7.213 | ||
| Pfam | 149 | 173 | 25 | 0.0021 | ||
| TIGRFAM | 149 | 177 | 29 | 0.0019 | ||
| PANTHER | 151 | 285 | 135 | 1.9E-27 | – | |
| Pfam | 176 | 225 | 50 | 4.1E-13 | ||
| ProSiteProfiles | 177 | 211 | 35 | 11.564 | ||
| TIGRFAM | 179 | 213 | 35 | 1.9E-6 | ||
| ProSiteProfiles | 212 | 247 | 36 | 10.063 | ||
| TIGRFAM | 214 | 249 | 36 | 6.7E-5 | ||
| Gene3D | 229 | 294 | 66 | 5.9E-14 | ||
| ProSiteProfiles | 248 | 282 | 35 | 12.54 | ||
| TIGRFAM | 251 | 284 | 34 | 4.5E-9 | ||
| Pfam | 251 | 285 | 35 | 1.4E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0235600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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