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LotjaGi5g1v0236500.1

Overview

Field Value
Gene ID LotjaGi5g1v0236500
Transcript ID LotjaGi5g1v0236500.1
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Haloacid dehalogenase-like hydrolase; TAIR: AT3G62040.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q09893|YAI5_SCHPO Uncharacterized protein C24B11.05; TrEMBL-Plants: tr|I3TAQ7|I3TAQ7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0236500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:54424953..54430409) extracted from Lotus japonicus Gifu genome v1.2.

CGACCACAAAGTTCCTACATGAAAAAATATGCCCGATTTCTGGAAGTTACCGTCAAAACACAATTTTTTAACACTCTATA GATTGTGGGGGTAAAAAATAGTCACAATCTGCATATATCGATCGGATGTCTTAGAGCTTCGGGGTTTACATATAAGAACC GGATTTTTAAAGGGTAAGAATTCTAACAATTGAAAAGTAACGATGCTCACCACCTAAGAAAGAAATTGGGCGTCACTTCG CACATTGAGCTTAGTGGTGGGTCTTCCTTCAACTTTATATACACGTATAAATATAAGATATCGTGAGCCACAATTATTTC GTGTTTCAGAAGGTATTACAATTAAACACCCTAAGGTCTTTGTTAGTCTTGACAATATTTCATTTTAAGTTTGTGTTTAT ACTTTATATGGTCCAAATTGGTAGGCATGTTTCATGCATTGAATTTGTCATAAGACTCATATATAACCCATTAAATGACT GATACTTACTTTTTTGATTCAGGCAGAGGTTTATTGGAGATTATTAGGCAGTAAATTCTAGATTTCTTCCCTGTGCAAGT GCTTCCTACTTGTTTTGTGAATTCCGTGATCACCGGGTATGTTTTTCTTGGTGTGTTAACATCTTCAAGTTTGGTATTTT TGCTGAAACTAGTTTGTCAGGTGTGTTTCAGCTGTTTTTTCTGATGCTGGCATACTGGTTGGCCATATTCTATGATCATC TAACTCTAAATATGATGTGATTAAGTGCATGTTTGGATATATAGTGAAAATCAATGTGAGACAAAATCATGGTGGACAGA AGCATCTTTACTTAGTTGTTGTGTCTATCACTGTAATTTTTCCTTCATTGTGGTTTTTCATCGTGTATCAAACATGTACT AAGCTATAGATAGGAATCTCGCACCTAAGGTGAGGAAACTTTTATGTGATTACTGAAATTTATTGCAGTTTCCAAGTTCA AGATGGATGCTCACAGGATTGATGGAGTCAAATACGAGTGCTTGCTTTTTGGTATGATTTGTCTAACCCATGCAGTGAAC TCTTATATGCTTCACAAGAGTGTATTATTACCTTTCTGTCTTCTGGTTTAATTTAAACCTCTCCTTCCCCTCATCGTTTC TCTCTTTCCTTTTCAACCACTTTAAACCTGTTGTATTACTTAAATGATAAAGAGTGAAAAGGAGTGATATAAATTTCTGG TTCCAAATGTTTGTCACAGATATAGATGACACTCTCTACCCATTGAGCTTAGGTCTCAATTTGGCATGTCGCAAGAACAT ACAAGGTATAAACATAAAGTACTAAAGCCAGAACATGAAATATTCTGCTGATCAGATAATCTCATATGTGATAGAATAGA ATAGAAGTATTCTAGTTAACCAATCTTGTTTACAGAGTATATGTTGGAACACTTGCACATTGAAGAAAGTGAAGTGCCAA AGATGTGCCTGGATTTGTATATTGAACATGGGACAACTATGGCAGGATTGAAGGTATAAAGATTTTGCATTGCACTCAGT TTTCTCTTGTTGATATTTTCTTATGAAACACTGATTGACAGTCAATGATATTTCTTATTAAGTTTTAGTCTTGATCTCTA CCAGGCCCTTGGTTATGAGTTTGACAATGATGAGTTTCATGCTTATGTGCATGGAAGATTACCATACGAGAAACTGAAGC CAGATTCAGTGTTGAGGAACCTTCTTCTTTCCATGCCTCAGCGTAAAATAGTATGTCAGAAAAAATTCAACATTTGATAC TACTAGTATTAGTTTGATCAATGAAGAGCATTCCATAATATTCAAAGGCTTGAAAATATTCTTTGCAGATATTCACAAAC TCAGATCACAAACATGCAGTTGAAGTTCTCAACAGATTGGGCTTGGAAGATTGTTTTGAAGGCATCATATGCTTTGAAAC TCTTAATCCTCCCAACATAGATGTATCAGATGATAATCATGTAACAGAGAGTGGACGTTTCAACTCCCACACACAAATCC TCTGCAAACCTTCTGTGGAAGCCTTCGAAGCTGCGATTCGGATTGCAAATGTGGATCCTAAGAAAACAGTAAGATTGATT ACTTACCTACAAAGTGACATGGGAATGGGAAGATTACTTCCTTAATTTGACTAGTTAATTTCAAAACTCTCTGAATCAAT TCATAATAGTTCTCTTCTATCTTCTGCAGATTTTCTTTGATGACAGTACTCGAAATATTGCAAGTGCAAAGGTAGCTGGA CTTCACACTGTTATGGTAAGTTATATTTGCTGTTTATGGATCTTATGTCACAATCTGTGTTTGCTTGTAATGCATGCTAA AAATGAAGTACATACTGATGGCAGGTGGGTCGTTCAGATTTGGTCCCTGGTGCTAACCATGCCCTGAACAGCATTCATAA TATCAGAGAAGCATTACCTGAAATATGGGAGGTTGAAGAAGACAGCCAACAGCAAATGATCCAATCCTTAGCAGTGGAAG CTATAGTCCTTGCATAGGTTTTGCTTGGATAAATTATCTAAGTAAACTTATCAAGCAAATCAAGAGTTTCTACCTAGCAG AGTTTTGTCTAAGTTTTCAATAACTTTGCAATTGCCTCCACAACATCATGATTTTAATTGTATGAATGACGCAATTGGCA TCTTGAAAAAGATGTGGAAACTAGTATATGCAAATTGCAGAAGCATGAAATTATAAGAGAAAAAGACATTTACTGTGTTT ATTACAGATTTCGTACAAGTCTAGGAATACAAAATGTGGTGCTGTATCCCTCCTAATGATAATTCACTAAACGCACATTT AGTGACATCCGAATTTCCCTTCAGCAGATAAAAATGACAATTCAAACTCATAAAATTGCATAGATCAACACCCTTAATCC CCTAAAACCCTCAACAGAATCGTAATTGATAGTCAGAAAATGTAGTACATTTCAATGTTAAGATCAACCCTCTAAAGGAA GTTCTCCAGAATTTGCTATTTTGCATGGCTTCCGGGGGCTGTTATCTGACCTGCTTGTCTCCTGTGACTCAAGTGTCCTC ACAACATCCATTCCATCAATGACATGCCCAAACACAACATGCCGATTGTCTAACCATGGAGTCTGCATCATGAAGTCATA TCATGTGCTTAGTATCAAAGCTAAAATGTAAACAAAGTAACAAACTCAAACAGAATGTGCGTTTTCTGGTTGAAATGCTA AATATTATGATTGTTTGGTTAAATGATTGAGCAATAAAGTACGTGATTCAACGTCGCTGGTAATATGTTCCAAGTGAGCG AAGTCAAAAGAAGGCACTTCCATCTCAGCAGATGTTAAGGCTTAGTTGCATCAATTTGAAATGTATCATATAACATTGTA GCAATTGAAATAAGATCGACCAAAAATGAATTTGTAAGACTAGAAGGATCTGAAGTGTAATTAAGGCTTCATTTTATCAG TGGGTCAACACCATTAAGACAATGTCATCCAGAATTGTCTTGCCATTAGTTTAAAATTAGATGCTGAGGCCTTTGACCAG AGTCTAGGATCCATAAAAAGAGGTGTAGATAGTTTTAGTTAGCTAGATTAGAGTTCTAAATTATAGGCTGAATGCATTAT TTTGGTGACTTCATCAAAAAAGGGATATGGTCTTTTTCTATCTGTTTTCAGTTTTCACTATTTCCAGGTTTTCAGTTATC CTTCAAGTAATAATTCTGAGAATTCCTTGTTTGTAAAGAGAGGTTGAAAATTTCTTTTCAGATAACAGACGCATAAAAAC ATATATATGCCTTATCCAATTCTTAAAGTGATAGAAAGCTCACGCATGTCTCTCACCTGTACAGTGCAAATAAAAAATTG ACTACCATTGGTATTAGGACCGGCATTTGCCATGCTTAAAACTCCAGGACCAACATGTTTCACTGCAAGAAATTTTATTT CAGATATGCTAGCTATCAGTTTTCCATTGAAAGTCCAATTTGAAGGAGATCAATTTAACAATTTTAAATTGGAACAACGA GCAAAGCAAAATTTTGAAAAGCAATTCCTAATAAAAATTATAAAACTCTATTACTGCTCAAGGGCCAATAGAGTATAGAG ACATACAAGAAAAATTCTCATCTTCAAATTTAGCACCATAGATACTGATTCCACCAGTTCCCTGCAGCCAATTAGAATAC ACATGAAGTCAAAGAAACATTATCGCTACACTGAATATACATAGAAGTGTTCAACTGCGTGCAGCACAGATTAGCATACA TATGCAAGAATGCTAGCAAAATATCACAGTACTCACATTTCCTTCAGTGAAGTCCCCTCCCTGAATCATGAAATCTTTGA TTATACGATGGAAGTAGCAATCTTTGAAACCATATCCTTTTTCTCCTGCATAGAGATTATTCATTTCTTGTTTAAGATGC GGTGTCACACAACCCACTTCACCATGATAATGCTCGGAAATTCTCACACAACTACAACAAGAACAAAGCTGTAAAAACAT TTGATTGATTACCTGTGCACAAAGCTCGGAAATTCTCTGCTGTTTTTGGAACGACGTCTCCAAATAGGCCGAAAACAATC CTGCCAGCAGCTTCACCCCCAATTGTTACATCAAAGAAAACTTTGCTTGTCACTTTGGCTTGCAGCTCCAGAGCCTAAAA GTAACAGAACCATGTAAGATAATGAACCGATATCAATATATCATAAACCAAGGCAGATTTGGCAAAAGAAAAAAAAATCT GATTAAAGCAATATGATTTAAACATGGAGATGGAATAATTCAATCTATTCACTTTAAGGATTAGGATCCTCTTGTGTGAA AATTCTGTCATGTTTCCTCATGTTGAAATTGTGTCTATCTCTTCATAAACATTTAATGGGTCCCACCTATACCTATTTCA TACATAGGTATGAAGACAGAGATAGACACAAAATTTCAACATGGGAGAATATGAGAGAATTTTCACATGAGACCTAATCC TCATTTTAAATGATTCTATGATCAAAACTGCTCCCTATTTCCGGAATCACTGCTCACCCTTATCTTAATACTCATGAGGG CAGAAATAAGCCTAAAGTGAAGAAAGTTAGTCCGGAGGGCACTATCCTACTCCTCCACTGTCTCACATTGGCCTAGAACT TTCTGCTAACAAAATCCAAACCATGAATTTAAATGTTACACTTACACTTTCCTTAGCATTGCATGTCATTCTCCTAAATG TGGTTGATTTTCCTTCAGATTTTAGAGTGACAGGAAACTTGGCAGCATAATGAGATCGTGATGCCAATGTTTTACTGCAA CCAAGCTGAGATCGGATACTGCTACAGACCACATGTGACCGTCGAACCTTCGATACATCTTGGCTAAAATTACCCTGGTT AAAAAGGGAACAGAAAACAAAAATTTCCCATTTTTATTAGCACATTCTCTTGTTGGCTGATATTAAAGAGTTATAACTTA GAAGCACCCACTACACA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0236500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATGCTCACAGGATTGATGGAGTCAAATACGAGTGCTTGCTTTTTGATATAGATGACACTCTCTACCCATTGAGCTT AGGTCTCAATTTGGCATGTCGCAAGAACATACAAGAGTATATGTTGGAACACTTGCACATTGAAGAAAGTGAAGTGCCAA AGATGTGCCTGGATTTGTATATTGAACATGGGACAACTATGGCAGGATTGAAGGCCCTTGGTTATGAGTTTGACAATGAT GAGTTTCATGCTTATGTGCATGGAAGATTACCATACGAGAAACTGAAGCCAGATTCAGTGTTGAGGAACCTTCTTCTTTC CATGCCTCAGCGTAAAATAATATTCACAAACTCAGATCACAAACATGCAGTTGAAGTTCTCAACAGATTGGGCTTGGAAG ATTGTTTTGAAGGCATCATATGCTTTGAAACTCTTAATCCTCCCAACATAGATGTATCAGATGATAATCATGTAACAGAG AGTGGACGTTTCAACTCCCACACACAAATCCTCTGCAAACCTTCTGTGGAAGCCTTCGAAGCTGCGATTCGGATTGCAAA TGTGGATCCTAAGAAAACAATTTTCTTTGATGACAGTACTCGAAATATTGCAAGTGCAAAGGTAGCTGGACTTCACACTG TTATGGTGGGTCGTTCAGATTTGGTCCCTGGTGCTAACCATGCCCTGAACAGCATTCATAATATCAGAGAAGCATTACCT GAAATATGGGAGGTTGAAGAAGACAGCCAACAGCAAATGATCCAATCCTTAGCAGTGGAAGCTATAGTCCTTGCATAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0236500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDAHRIDGVKYECLLFDIDDTLYPLSLGLNLACRKNIQEYMLEHLHIEESEVPKMCLDLYIEHGTTMAGLKALGYEFDND EFHAYVHGRLPYEKLKPDSVLRNLLLSMPQRKIIFTNSDHKHAVEVLNRLGLEDCFEGIICFETLNPPNIDVSDDNHVTE SGRFNSHTQILCKPSVEAFEAAIRIANVDPKKTIFFDDSTRNIASAKVAGLHTVMVGRSDLVPGANHALNSIHNIREALP EIWEVEEDSQQQMIQSLAVEAIVLA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12725:SF110
4 264 261 3.7E-141 –
PANTHER
PTHR12725
4 264 261 3.7E-141 –
SFLD
SFLDS00003
10 247 238 0.0 –
SFLD
SFLDG01132
10 247 238 0.0
IPR010237
TIGRFAM
TIGR01993
12 216 205 4.0E-72
IPR010237
SUPERFAMILY
SSF56784
13 220 208 1.4E-29
IPR036412
Gene3D
G3DSA:3.40.50.1000
13 236 224 3.9E-48
IPR023214
CDD
cd02604
13 218 206 3.94732E-83
IPR010237
Gene3D
G3DSA:1.10.150.450
24 93 70 3.9E-48 –
TIGRFAM
TIGR01509
171 216 46 3.0E-11
IPR006439

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0236500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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