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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0237000 |
| Transcript ID | LotjaGi5g1v0237000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB transcription factor; TAIR: AT4G01680.1 myb domain protein 55; Swiss-Prot: sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86; TrEMBL-Plants: tr|A0A0D2SIE1|A0A0D2SIE1_GOSRA Uncharacterized protein; Found in the gene: LotjaGi5g1v0237000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54480759..54482846) extracted from Lotus japonicus Gifu genome v1.2.
TATCTCTCAAATTCTCTCTATCACAGCCCCTCCTACATTCAACTGTGGTTCAGTGCCACCTTTGTTGACATTTCTCATAG GAATAAACAAACTTTGTGTCAATTGAAAAGGTTCACCCCTCAATATTATAGGCAAGGGGGAAAAGTACTAATGGGAAGAC ACTCATGCTGCTACAAGCAGAAGCTTAGGAAGGGTCTGTGGTCACCAGAGGAAGATGAGAAACTTCTGAGGCATATTACG AAGTATGGCCATGGATGTTGGAGTTCTGTGCCTAAGCAAGCAGGTAAATTAATCCTTCTCTGCTTCATCCTGTTCTTCTT TGGCATGTAATCAATTACTTTCATTGTTATTGATCTCTCTTTCATTGTTTTGTATTGTAAGGTTTGCAGAGGTGTGGTAA GAGCTGCAGGCTTAGGTGGATCAATTACTTAAGGCCTGATTTAAAAAGAGGAACATTCTCACAAGAAGAAGAAAATCTTA TAATTGAACTTCATGCAGTACTAGGGAACAGGTATATTGAATTAATAAATTCTCCCCTTTTGCCTTTTCTACTGTGATTT AGCTTCTTCTGATATCATATTCTGTCTCAGATGGTCTCAAATTGCGGCGCAATTGCCGGGAAGGACCGACAATGAAATAA AGAATCTTTGGAACTCTTGCCTGAAGAAGAAGCTGAGGCAACAAGGTATAGACCCTGTCACTCATAAACCTTTACCACAG GGTGAGAATGGAGAGGAAATTCAAAATGTTAGGAGCCAAGAGAAAGCACCTCAACAATTATCCAATGAACTGAATTTGAA CCTATTGAAATCAGAGAGTTCAAAATCAGATGCAGCTTCTTATGAGCAAAGAACATCTTCAATTTCCCCAAAGGCCTATG CACCTGAGAATATGGAAGGTTCTTGCAGCAAAGACATGTTCCTAGACAGGTTCATGAGTACTCAGCCCTCAGATTTGATG GGGAATTTTCCTCTTCAGATGAGTTATTCAAACACTGATTGTCTTCCAACCGATTCAAACACTAGTCATTGGTTCAGCCA AAGGCCTTTTGACATGAACTCTGAATTTCCTTTGAATGCAACTTCTCTTCTTACACCTACAACAAGCTTGTTTCTTCCTA GTTCTTTATGCTACAAGCCACTTTCTGTTGTTCCCTCTGACAATATTTCTGGATCCCATTACTGGGAAGCCAGTGCCTCC AATAATAGCAATAGCAGCAATAGAAGTAATAGCAGCACAGAATTGAGAAACAGCAACCACTTAAACTTTCAGAATAGTGC TCTTTCTTCTTGGGGATTGGCAGATTGTGGTGCCTCTACTAAAGAGTCCCAAATTCATATGATGGAAAACTTAAACCACT CAGCAGAAGCTAATAAATGGGATGAGTACCTTCACAATCCAATGTTAATGATGGGTTCTGTGCAAAATGAAGCTCCTGAA TCTTTGTGCAATGAGATAAAGCCTCCCATGCATTTGGTGCCTGATACTTTAGGTTCCATTTTGCAGCAGCAAGAACCTTC CCAAACATCTAATATCTTTTCCAAGGATATTCAGAAGCTCAGAGCAGCATTTGGACACATGTAGCATGATTTGAGGAAAG CAAGGAAGATTTTAGAGGGATTGCTATTCTTAGTACAGGTGTGTGAAACCACAGATTTTTTTCTCTTGTATATAGGTCAG AGTCTGATACAAAACATTTGTTTTTCACTCTTTTCTCTTTGCTGATTCTGGTGAGCCAAACCATTTGTTTTTTTACCTTC TTCTTTTTCTTATTGGGTGTGGGGTAGAATTGCAGAATAAGGATTGCTCTGCTGTCTTCTTTTTACTCTTTCTTTCTTTG CTATACTGTAACCTCAATGGTGAATTTCTATATCCAAGCCATCACAATTGTTTATTGGTTCATATGAAGTTTCTTTTTCC TCTCAACTTCAGTGACACTCTGAAGCTATTCAAGAAGCGTTCTCTACATAATTAATTTTGTTTTAGAATCAATTGCAGAA GTATTTTCAGACATGCGCTTATATGTTTGCAAGTCATGTAGGTTTTCACGTTTCGAAAGAAAAGTGGTTTCCAAAGAAGC TACTAGAA
CDS sequence (LotjaGi5g1v0237000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGACACTCATGCTGCTACAAGCAGAAGCTTAGGAAGGGTCTGTGGTCACCAGAGGAAGATGAGAAACTTCTGAG GCATATTACGAAGTATGGCCATGGATGTTGGAGTTCTGTGCCTAAGCAAGCAGGTTTGCAGAGGTGTGGTAAGAGCTGCA GGCTTAGGTGGATCAATTACTTAAGGCCTGATTTAAAAAGAGGAACATTCTCACAAGAAGAAGAAAATCTTATAATTGAA CTTCATGCAGTACTAGGGAACAGGTATATTGAATTAATAAATTCTCCCCTTTTGCCTTTTCTACTGTGA
Protein sequence (LotjaGi5g1v0237000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIE LHAVLGNRYIELINSPLLPFLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 89 | 89 | 6.0E-71 | – | |
| PANTHER | 1 | 89 | 89 | 6.0E-71 | ||
| ProSiteProfiles | 9 | 65 | 57 | 25.116 | ||
| Gene3D | 11 | 67 | 57 | 2.6E-20 | – | |
| SMART | 13 | 63 | 51 | 2.7E-13 | ||
| Pfam | 14 | 61 | 48 | 7.1E-16 | ||
| SUPERFAMILY | 16 | 90 | 75 | 1.1E-23 | ||
| CDD | 17 | 61 | 45 | 3.18348E-12 | ||
| ProSiteProfiles | 62 | 92 | 31 | 4.321 | ||
| Coils | 102 | 102 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0237000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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