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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0237000 |
| Transcript ID | LotjaGi5g1v0237000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb-like transcription factor; TAIR: AT1G09540.1 myb domain protein 61; Swiss-Prot: sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86; TrEMBL-Plants: tr|A0A1J7GSD9|A0A1J7GSD9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0237000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54480915..54483194) extracted from Lotus japonicus Gifu genome v1.2.
ATATACATTAAATAAGAGTAAATATGATGCTATAAAGTTTCCGCTATGCGTGAGTTCAAGAGAGAAACCAAACCTACTTT ATTGATCTAATGTATGTAGTCTTATCTTGCATTTTTATAAGATGCTGATTTCACAGCTCGAACATTTGACCGCAAAGTCA CATGACAACAACACGTTGCGCCAAGGATCATCCTATGATCCATATATACATTACAAAAAAGTAAAAAAGAAAAAGAAAAT AGAAGGAGCCTTATTGACTATGACTTCTCTCATTTCATATCACAGGGTCACCCTGCCTATTATATTAATTCAAATCCTAT CATCTGCAAGTTCATTTTCCTTCCTTCATATCTCTCAAATTCTCTCTATCACAGCCCCTCCTACATTCAACTGTGGTTCA GTGCCACCTTTGTTGACATTTCTCATAGGAATAAACAAACTTTGTGTCAATTGAAAAGGTTCACCCCTCAATATTATAGG CAAGGGGGAAAAGTACTAATGGGAAGACACTCATGCTGCTACAAGCAGAAGCTTAGGAAGGGTCTGTGGTCACCAGAGGA AGATGAGAAACTTCTGAGGCATATTACGAAGTATGGCCATGGATGTTGGAGTTCTGTGCCTAAGCAAGCAGGTAAATTAA TCCTTCTCTGCTTCATCCTGTTCTTCTTTGGCATGTAATCAATTACTTTCATTGTTATTGATCTCTCTTTCATTGTTTTG TATTGTAAGGTTTGCAGAGGTGTGGTAAGAGCTGCAGGCTTAGGTGGATCAATTACTTAAGGCCTGATTTAAAAAGAGGA ACATTCTCACAAGAAGAAGAAAATCTTATAATTGAACTTCATGCAGTACTAGGGAACAGGTATATTGAATTAATAAATTC TCCCCTTTTGCCTTTTCTACTGTGATTTAGCTTCTTCTGATATCATATTCTGTCTCAGATGGTCTCAAATTGCGGCGCAA TTGCCGGGAAGGACCGACAATGAAATAAAGAATCTTTGGAACTCTTGCCTGAAGAAGAAGCTGAGGCAACAAGGTATAGA CCCTGTCACTCATAAACCTTTACCACAGGGTGAGAATGGAGAGGAAATTCAAAATGTTAGGAGCCAAGAGAAAGCACCTC AACAATTATCCAATGAACTGAATTTGAACCTATTGAAATCAGAGAGTTCAAAATCAGATGCAGCTTCTTATGAGCAAAGA ACATCTTCAATTTCCCCAAAGGCCTATGCACCTGAGAATATGGAAGGTTCTTGCAGCAAAGACATGTTCCTAGACAGGTT CATGAGTACTCAGCCCTCAGATTTGATGGGGAATTTTCCTCTTCAGATGAGTTATTCAAACACTGATTGTCTTCCAACCG ATTCAAACACTAGTCATTGGTTCAGCCAAAGGCCTTTTGACATGAACTCTGAATTTCCTTTGAATGCAACTTCTCTTCTT ACACCTACAACAAGCTTGTTTCTTCCTAGTTCTTTATGCTACAAGCCACTTTCTGTTGTTCCCTCTGACAATATTTCTGG ATCCCATTACTGGGAAGCCAGTGCCTCCAATAATAGCAATAGCAGCAATAGAAGTAATAGCAGCACAGAATTGAGAAACA GCAACCACTTAAACTTTCAGAATAGTGCTCTTTCTTCTTGGGGATTGGCAGATTGTGGTGCCTCTACTAAAGAGTCCCAA ATTCATATGATGGAAAACTTAAACCACTCAGCAGAAGCTAATAAATGGGATGAGTACCTTCACAATCCAATGTTAATGAT GGGTTCTGTGCAAAATGAAGCTCCTGAATCTTTGTGCAATGAGATAAAGCCTCCCATGCATTTGGTGCCTGATACTTTAG GTTCCATTTTGCAGCAGCAAGAACCTTCCCAAACATCTAATATCTTTTCCAAGGATATTCAGAAGCTCAGAGCAGCATTT GGACACATGTAGCATGATTTGAGGAAAGCAAGGAAGATTTTAGAGGGATTGCTATTCTTAGTACAGGTGTGTGAAACCAC AGATTTTTTTCTCTTGTATATAGGTCAGAGTCTGATACAAAACATTTGTTTTTCACTCTTTTCTCTTTGCTGATTCTGGT GAGCCAAACCATTTGTTTTTTTACCTTCTTCTTTTTCTTATTGGGTGTGGGGTAGAATTGCAGAATAAGGATTGCTCTGC TGTCTTCTTTTTACTCTTTCTTTCTTTGCTATACTGTAACCTCAATGGTGAATTTCTATATCCAAGCCATCACAATTGTT TATTGGTTCATATGAAGTTTCTTTTTCCTCTCAACTTCAG
CDS sequence (LotjaGi5g1v0237000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGACACTCATGCTGCTACAAGCAGAAGCTTAGGAAGGGTCTGTGGTCACCAGAGGAAGATGAGAAACTTCTGAG GCATATTACGAAGTATGGCCATGGATGTTGGAGTTCTGTGCCTAAGCAAGCAGGTTTGCAGAGGTGTGGTAAGAGCTGCA GGCTTAGGTGGATCAATTACTTAAGGCCTGATTTAAAAAGAGGAACATTCTCACAAGAAGAAGAAAATCTTATAATTGAA CTTCATGCAGTACTAGGGAACAGATGGTCTCAAATTGCGGCGCAATTGCCGGGAAGGACCGACAATGAAATAAAGAATCT TTGGAACTCTTGCCTGAAGAAGAAGCTGAGGCAACAAGGTATAGACCCTGTCACTCATAAACCTTTACCACAGGGTGAGA ATGGAGAGGAAATTCAAAATGTTAGGAGCCAAGAGAAAGCACCTCAACAATTATCCAATGAACTGAATTTGAACCTATTG AAATCAGAGAGTTCAAAATCAGATGCAGCTTCTTATGAGCAAAGAACATCTTCAATTTCCCCAAAGGCCTATGCACCTGA GAATATGGAAGGTTCTTGCAGCAAAGACATGTTCCTAGACAGGTTCATGAGTACTCAGCCCTCAGATTTGATGGGGAATT TTCCTCTTCAGATGAGTTATTCAAACACTGATTGTCTTCCAACCGATTCAAACACTAGTCATTGGTTCAGCCAAAGGCCT TTTGACATGAACTCTGAATTTCCTTTGAATGCAACTTCTCTTCTTACACCTACAACAAGCTTGTTTCTTCCTAGTTCTTT ATGCTACAAGCCACTTTCTGTTGTTCCCTCTGACAATATTTCTGGATCCCATTACTGGGAAGCCAGTGCCTCCAATAATA GCAATAGCAGCAATAGAAGTAATAGCAGCACAGAATTGAGAAACAGCAACCACTTAAACTTTCAGAATAGTGCTCTTTCT TCTTGGGGATTGGCAGATTGTGGTGCCTCTACTAAAGAGTCCCAAATTCATATGATGGAAAACTTAAACCACTCAGCAGA AGCTAATAAATGGGATGAGTACCTTCACAATCCAATGTTAATGATGGGTTCTGTGCAAAATGAAGCTCCTGAATCTTTGT GCAATGAGATAAAGCCTCCCATGCATTTGGTGCCTGATACTTTAGGTTCCATTTTGCAGCAGCAAGAACCTTCCCAAACA TCTAATATCTTTTCCAAGGATATTCAGAAGCTCAGAGCAGCATTTGGACACATGTAG
Protein sequence (LotjaGi5g1v0237000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIE LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQQGIDPVTHKPLPQGENGEEIQNVRSQEKAPQQLSNELNLNLL KSESSKSDAASYEQRTSSISPKAYAPENMEGSCSKDMFLDRFMSTQPSDLMGNFPLQMSYSNTDCLPTDSNTSHWFSQRP FDMNSEFPLNATSLLTPTTSLFLPSSLCYKPLSVVPSDNISGSHYWEASASNNSNSSNRSNSSTELRNSNHLNFQNSALS SWGLADCGASTKESQIHMMENLNHSAEANKWDEYLHNPMLMMGSVQNEAPESLCNEIKPPMHLVPDTLGSILQQQEPSQT SNIFSKDIQKLRAAFGHM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 143 | 143 | 1.0E-128 | ||
| PANTHER | 1 | 143 | 143 | 1.0E-128 | – | |
| ProSiteProfiles | 9 | 61 | 53 | 18.926 | ||
| Gene3D | 11 | 67 | 57 | 4.2E-19 | – | |
| SUPERFAMILY | 12 | 108 | 97 | 1.61E-29 | ||
| SMART | 13 | 63 | 51 | 2.7E-13 | ||
| Pfam | 14 | 61 | 48 | 9.1E-15 | ||
| CDD | 17 | 61 | 45 | 2.98575E-12 | ||
| ProSiteProfiles | 62 | 116 | 55 | 25.948 | ||
| SMART | 66 | 114 | 49 | 1.8E-13 | ||
| Pfam | 67 | 111 | 45 | 1.6E-12 | ||
| CDD | 69 | 109 | 41 | 5.23691E-10 | ||
| Gene3D | 69 | 146 | 78 | 6.0E-20 | – | |
| MobiDBLite | 119 | 148 | 30 | - | – | |
| PANTHER | 208 | 331 | 124 | 1.0E-128 | – | |
| PANTHER | 208 | 331 | 124 | 1.0E-128 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0237000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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