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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0237600 |
| Transcript ID | LotjaGi5g1v0237600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chitinase; TAIR: AT4G01700.1 Chitinase family protein; Swiss-Prot: sp|Q5NB11|CHI10_ORYSJ Chitinase 10; TrEMBL-Plants: tr|I3SJS9|I3SJS9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0237600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54573591..54574904) extracted from Lotus japonicus Gifu genome v1.2.
TTCAGACATTTCCCACTTCAGATCAGATGGTGCCTATAAAACCCAATCTTGCTCCCAACACAAAATCATTAACATTTAAT TCAACCCTTTTTAGCAAATGGTACTCTCATTGTCCTCCATTGTTGTATCTTTCTCTAGCTTCATATTTTGCTTCACAATC CTGCTTCACTCCTCATCATTTGGAGCTGAAGCACGTTACTCACCCATTACACCAATCTCTTCTCTCATTAGCAAAAGCCT TTTTGATTCAATTTTCCTTCACAAAGATGACTCTGCATGCCCTGCTAAAAACTTCTACACCTATGAGTCTTACATTCAAG CTTCCAAATGCTTCCCTGCATTTGGCGCTACAGGTAGTTTAACCACGCGCAAGCGTGAGATTGCTGCTTTTCTTGCCCAA ATTTCACATGAAACCACAGGTGGGTGGGCTACTGCACCTGATGGACCATATGCTTGGGGATTGTGCTTCAAGGAAGAAGT TAGTCCTCAAAGTGATTACTGTGATTCCACCAACAAAGAATGGCCTTGTTATCCAGGGAAAAGTTACAAAGGCAGAGGAC CAATTCAACTTTCCTGGTATATTACACTGATTGTAAATTGTGAAAATGTTTGAAAAGTGAGATACATGTAAGGTTTTATG TTATTGATTGATTGAATTTGAAATATAATTTTTGTGCTGCAGGAACTACAACTATGGACCAGCTGGGAAGGCTTTGGGAT TTGATGGATTGAGAAATCCGGAGATCGTGACCAATAGTTCATTGGTTGCATTTAGAACTTCTCTGTGGTTTTGGATGACG GAGCGAAAGCCGAAACCTTCTTGCCACAATGTGATGATTGGGAAATATGTGCCAACTCAAGCTGACATAGCAGCTAACCG AACTGCAGGGTTTGGTCTGGTGACTAACATCATCAATGGTGGACTTGAGTGTGGGCTTTCTGATGATGGAAGGGTGAATG ATCGGATTGGATACTTTGAAAGATATGCAGGGTTGTTTAATGTGGATACAGGTCCTAACTTGGATTGTGCATATCAGAAA TCCTTCTAAAGCTCTTGTGTAATAGTGGCATTTTCCATTTTTGGTTTATCATTAGAAGTTTATTGACAGTAATACATGGA TTTATGATGCTCCTCACATGTGCTAGCGTGGCTACTTGCTAGAGATGTATTTAAGAAATTGATGAATAAAATTAATTGAA GTATGTTTTTAGTCCCTTAAAGTATTGAGACTTAAACTAACACAAGTTTTGGTCCACTTTCACTATCCTAGTTGAATCAG CTATATATTTATAAACAAAATTTTCACATAAAAG
CDS sequence (LotjaGi5g1v0237600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTACTCTCATTGTCCTCCATTGTTGTATCTTTCTCTAGCTTCATATTTTGCTTCACAATCCTGCTTCACTCCTCATC ATTTGGAGCTGAAGCACGTTACTCACCCATTACACCAATCTCTTCTCTCATTAGCAAAAGCCTTTTTGATTCAATTTTCC TTCACAAAGATGACTCTGCATGCCCTGCTAAAAACTTCTACACCTATGAGTCTTACATTCAAGCTTCCAAATGCTTCCCT GCATTTGGCGCTACAGGTAGTTTAACCACGCGCAAGCGTGAGATTGCTGCTTTTCTTGCCCAAATTTCACATGAAACCAC AGGTGGGTGGGCTACTGCACCTGATGGACCATATGCTTGGGGATTGTGCTTCAAGGAAGAAGTTAGTCCTCAAAGTGATT ACTGTGATTCCACCAACAAAGAATGGCCTTGTTATCCAGGGAAAAGTTACAAAGGCAGAGGACCAATTCAACTTTCCTGG AACTACAACTATGGACCAGCTGGGAAGGCTTTGGGATTTGATGGATTGAGAAATCCGGAGATCGTGACCAATAGTTCATT GGTTGCATTTAGAACTTCTCTGTGGTTTTGGATGACGGAGCGAAAGCCGAAACCTTCTTGCCACAATGTGATGATTGGGA AATATGTGCCAACTCAAGCTGACATAGCAGCTAACCGAACTGCAGGGTTTGGTCTGGTGACTAACATCATCAATGGTGGA CTTGAGTGTGGGCTTTCTGATGATGGAAGGGTGAATGATCGGATTGGATACTTTGAAAGATATGCAGGGTTGTTTAATGT GGATACAGGTCCTAACTTGGATTGTGCATATCAGAAATCCTTCTAA
Protein sequence (LotjaGi5g1v0237600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLSLSSIVVSFSSFIFCFTILLHSSSFGAEARYSPITPISSLISKSLFDSIFLHKDDSACPAKNFYTYESYIQASKCFP AFGATGSLTTRKREIAAFLAQISHETTGGWATAPDGPYAWGLCFKEEVSPQSDYCDSTNKEWPCYPGKSYKGRGPIQLSW NYNYGPAGKALGFDGLRNPEIVTNSSLVAFRTSLWFWMTERKPKPSCHNVMIGKYVPTQADIAANRTAGFGLVTNIINGG LECGLSDDGRVNDRIGYFERYAGLFNVDTGPNLDCAYQKSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 32 | 32 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 32 | 32 | - | – | |
| TMHMM | 2 | 24 | 23 | - | – | |
| Phobius | 8 | 23 | 16 | - | – | |
| PIRSF | 10 | 281 | 272 | 2.7E-105 | ||
| PANTHER | 12 | 281 | 270 | 4.5E-159 | – | |
| PANTHER | 12 | 281 | 270 | 4.5E-159 | – | |
| Phobius | 24 | 32 | 9 | - | – | |
| Phobius | 33 | 281 | 249 | - | – | |
| SUPERFAMILY | 40 | 281 | 242 | 9.0E-98 | ||
| Pfam | 43 | 275 | 233 | 2.1E-105 | ||
| CDD | 44 | 275 | 232 | 1.80427E-117 | – | |
| Gene3D | 49 | 281 | 233 | 3.8E-101 | – | |
| ProSitePatterns | 61 | 83 | 23 | - | ||
| Gene3D | 126 | 184 | 59 | 3.8E-101 | – | |
| ProSitePatterns | 188 | 198 | 11 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chitinase activity | Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Biological process | Chitin catabolic process | The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. | ||
| Biological process | Cell wall macromolecule catabolic process | The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall. |
Expression pattern of LotjaGi5g1v0237600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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