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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0238300 |
| Transcript ID | LotjaGi5g1v0238300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF4283 domain protein; TAIR: AT3G31430.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|Q48513|PFAP_LEPBO Putative peptidase PfaP; TrEMBL-Plants: tr|V7B3B1|V7B3B1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0238300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54644360..54648538) extracted from Lotus japonicus Gifu genome v1.2.
GGAGGTGGAAGCTGGGGAGCGCAGGAAGGATGGCACGGTGCAGCAAGGAGATGGGAACGTTCTAATGTAACGTCTTTCTT CTTTTCAAATTTCCCGGACAATTTCAAGGCAAGGAATATGTGGGAGGTTTTCATGTGGGGAGAGGTGCAGGAGGTCTTTA TCCCTAACAAACGCGACAAGGTAGGAAGACGCTTCGGATTCGTAAGATTTTACGACGTAGAGGATCCTATGGGACTGAGC CGCCGTCTAGATCAGATTTTCATTGGTAGCACCAAGCTCCATGTCAATCCTCCGCGGTTTGTAAAGCAATTGATGGACCC TGAGACAAAACACCAGAACCGGAATAAGCAGAACATCTCAAGACCGAGGAAGACACCGATTCAGAGTCAGAAGACGGTGC TCAGGAACATTAAGGAGGGGAAGAAATCTTACGCGGACGCTGTGTCCGGTGGTGAAAACATTGATTCACAGAATCACGTT CCTAAGGAAGACAATGTCGCCCAACTCTGGATTGAAGATACAGTTGACGACTGGTTGAAGAAGAGTTGGGTTGGTAAAAT TCGGGATGTGTCTAAAATTGAAAACCTCCCGGAGACATTGATAGTGGGAGGAGTTCACTCTATCAGATCCCGCTATATGG GGGACGATTTAATATTATTATCAGGGGAGCAGGAGGAAAATCTGGAGGAGATTCTTCAGCAAGCCAAGGAGTGGTTGGAT GGAATGTTCAGTTCCCTACAACCGTGGAGCCGCAATATTTCGTTGAAGCGAAGATTGGTCTGGGTTCGGTGTTACGGTTT CCCTCTCCATATATGGAAGATGGAATCTCTTAAACACCTTTTGAAACCAATTGGTGACCTTGTGGAGATGGATAAGACAA CAGAAACAATGTCAAATGTGGAATTTGCTCGATTAAAGGTGGTCACAACGAAACTGGAATCCATAAATGTGGCCTGGGAT ATGAACTTTAGCAAGGTGGTACACGGCATTCGAATTGTGGAAGAGACACCGGTTGCACCAGATTTCTGGAGGTTGCATCA TAATGTAAACGTGGAGGATGATGACGAATCATCCAAATGGTCATATGATGGTTCTGCAAGAGGAGCTGCAGAGTCGGTTG ATTCAGAGTTCATTGATGATGAATCGGGCGGTGATGGCCATGATTTGGACGGTGGTGGGTTCGCCGGCAGGAATCCCAAC GGTTTGGTGGCGCAGGTTGGGGTTGACTCGAATCCTGATGTGCCATTAAGATACCATATGGAAAACTGGAATCCATTTAC TGACGTGGGGTCTGGCACGGGAATAGAGTCAAGCAACGGCGAGGACAATAATGTTTCAATCATGAGGAGTCAGGTTGCTG ACACAGGAAGCCAAGTTGGAATGGGAATTGACTCAGGGGTATGTTTGGATGTGGGCCATGCAAGAGAGGATCTTTTTGAT AATTTGGGGTTGTCTTCAAATGGGCTGGGTGTTGGTGGGTCTCAATTTGCTGACCCGAGCCCAAATGTGCTGGAGTGTTC TCCCTTGGAGCCTATCACCAGCAATTTCACCCCAAATTTGCCAATCCCTGATCCTGTTGCAGCTTCGCTCGAGCCTCTCA TTAATGGCGACAATCAAACCCATCCATGTCAGGCGATTTTGGCGTTTCACGAGAAAGAAGGGGCAGCTTGCGAAACAACA TCATCCCATGGTTTGGCTTTGGCAGCAACCAAACGGAAATTGGTCAGGCAAGTAGTTCATTCTCTCAGTTGTTCATCTGG GTCTTTGCAAGCTGAAGATGACGGAATTCCTTGCTCTAGAGATATCGCTGCAGAAGCTAGTAAAGCTTGGCATCTGGGGA AGATGTTGGGGTTGGCTTTTCAGGGAGATGAGGGAGTAGTAGTGGGAAGATTAGAGGAATTAGAAAAGAGAGACATGGCT TTGTTATACAGCCAGGAAAAGGAAGGTGTGGAAGGGGATGCTAACCTATCCCAATGATTATGCTATCTTATAATGTGAGG GGGTTGGGGAGTAGTGTGAAGATTCGGGCAATCAAGGAAATGGTACAAAAGGACAGAGTTGACATGATCCTCATTCAGGA GTCAAAGTTAGAAGTAGTAGATCAGAGATTATGTCGAGCTATTTGGGGAGATGTAGATTGTGACTGGGTTTTCAAGGCAA GCTCAAATCGGTCCGGTGGCTTAATATGTATCTGGCAGAAAGGGAAATTTATTCTACAGGATAGTATAGAAGGTGATGGC TTCCTTGCCATGCGTGGAATATGGGAACAACAAACCCATAGCTCTGCAATTATCAATGTCTACGCACCCTGCACATTGAG GGGAAAACAGAAGCTCTGGGAGGATTTGGAGGAGTATATTACTAACACTGGTATTTCGTGCTTTTGCATTGCAGGCGATT TTAATGTTGTTGCAAGATCAGAGGAAAGAATGGGAATCACAAATTCTTTATATGGCAGGAGCGATATGGCTGATTTCAAG GCATTCCTCTCCAACTTATCACTAATTGAACCTCCTGCTGTGGGTAAAAAATACACTTGGTTCCGACCCAACGGACAGGC AGCAAGCAGATTAGATAGATTCCTGCTATCTAGTGACTGGTGCTCTTGTTGGCCTCATGGTGTTCAAACTGTTATGGCTA GAAGCTTGTCAGATCACTGCCCTGTTATGTTTCGAAGCACTGATGTGAATTGGGGGCCGAGACCCTTCCGTGTGATGAAC TGTTGGTTCTCTGATCCAGGTTTCAAGGCTTTTGTTGAAAAGGAATGGCAAGGATTCCAAGTCCAAGGTTCTGGGGGATT TGTTTTGAAAGAAAAACTTAAACTGCTCAAAGAAAAATTGAAAGTCTGGAATAAAGAAGAATTCAGCGATATCAACCGGA AATTCAGGGAGATCTCTGCGAATTTGGAAGAGCTTGATCAGAAATTGGGGAATGTTGGATTATCGGCCCAGGAATTACAA CAGAGAAGAGAACTTCAAGGCGACTTATGGAGAGCAGCGAAATTCAGAGAGTCGATTTTACATCAGAAATCCCGATGTAG GTGGCTTCAAGAAGGTGATTTAAATACCAAATTCTTCCATTCTTTTGTTAATTGGCGTCGACAATCAAACAGGTTGGTAG GGTTACATCTAAATGGTTTGTGGGTTGAGGACCCTGTTTCTGTAAAGAGAGGCGCCAAAGATTATTTCGAGAGGAAATTT GGCAAACTAAATGATCCAGCACCTTCCCTGGATGGTGTTCCCTTTAGACAGATTAGCGTGGAAGCTAGCATGAAGCTTAC AGATAAATTTGACCCTGCAGAAGTCAAGGAAGCTGTGTGGGAATGCGGAAGCGACAAAAGCCTTGGACCAGATGGGATGA ATTTTAAGCTTATAAAGTCCTTTTGGCACCTGTTTGCTGCAGATTTTCAACGACTTATGGATGAATTTCATATTAATGGC CGCTGGGTAAAAGGTGGTAATTCTTCCTTCTTAACTCTGATTCCGAAGAAGGACTGCCCCAGTGAATTAGCCGATTTTAG ACCAATTTCACTGATTGGTTGTGCTTACAAAGTAGTATCGAAAGTGTTGGCTAATCGCATTAAAAATGTGCTGCCTACAG TCATTGATGATGCTCAAAGTGCGTTTATTGCGGGGAGAGGTTTGTTAGATAGTGTGTTAGTTGCAAATGAATGGGCCCAT GAGGCGAAGGCGAGGAAGAAAAGCTCGATGGCTTTCAAAGTCGATTTTGAAAAGGCCTACGACTCGGTCAGGTGGGAGTT TCTTTATTACATGATGAAGCGAATGAACTTCAACGGTAAATGGATTTCCTGGATTAAGGGGTGCATTGAATCTGCCAGGA TGTCGGTCTTGATCAACGGGAGTCCAAGTGAGGAATTTTGCATGGGTAAAGGCATTCGCCAAGGTGATCCAATTGCACCT TTCCTATTTTTGATTATTGCAGAGGGACTTAACGGTTTATTGAAACAGGCAGTGGTTCATAATAAGTTCAGAGGCTATGT GTTTGATGACTTGGTGGATGAGGAGATTTCTATATTACAGTTTGCTGACGACACCTTGTTTATTGGTGAAGCTTCTAGGA AGAATGCATTCACTCTGAAATGCATCTTACACTGTTTTGAACTAGCTTCTGGCCTAAAGGTAAATTTTTCTAAAAGCAGT TTGTTAGGCATTGCAGTGG
CDS sequence (LotjaGi5g1v0238300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGGAGGTTTTCATGTGGGGAGAGGTGCAGGAGGTCTTTATCCCTAACAAACGCGACAAGGTAGGAAGACGCTTCGG ATTCGTAAGATTTTACGACGTAGAGGATCCTATGGGACTGAGCCGCCGTCTAGATCAGATTTTCATTGGTAGCACCAAGC TCCATGTCAATCCTCCGCGGTTTGTAAAGCAATTGATGGACCCTGAGACAAAACACCAGAACCGGAATAAGCAGAACATC TCAAGACCGAGGAAGACACCGATTCAGAGTCAGAAGACGGTGCTCAGGAACATTAAGGAGGGGAAGAAATCTTACGCGGA CGCTGTGTCCGGTGGTGAAAACATTGATTCACAGAATCACGTTCCTAAGGAAGACAATGTCGCCCAACTCTGGATTGAAG ATACAGTTGACGACTGGTTGAAGAAGAGTTGGGTTGGTAAAATTCGGGATGTGTCTAAAATTGAAAACCTCCCGGAGACA TTGATAGTGGGAGGAGTTCACTCTATCAGATCCCGCTATATGGGGGACGATTTAATATTATTATCAGGGGAGCAGGAGGA AAATCTGGAGGAGATTCTTCAGCAAGCCAAGGAGTGGTTGGATGGAATGTTCAGTTCCCTACAACCGTGGAGCCGCAATA TTTCGTTGAAGCGAAGATTGGTCTGGGTTCGGTGTTACGGTTTCCCTCTCCATATATGGAAGATGGAATCTCTTAAACAC CTTTTGAAACCAATTGGTGACCTTGTGGAGATGGATAAGACAACAGAAACAATGTCAAATGTGGAATTTGCTCGATTAAA GGTGGTCACAACGAAACTGGAATCCATAAATGTGGCCTGGGATATGAACTTTAGCAAGGTGGTACACGGCATTCGAATTG TGGAAGAGACACCGGTTGCACCAGATTTCTGGAGGTTGCATCATAATGTAAACGTGGAGGATGATGACGAATCATCCAAA TGGTCATATGATGGTTCTGCAAGAGGAGCTGCAGAGTCGGTTGATTCAGAGTTCATTGATGATGAATCGGGCGGTGATGG CCATGATTTGGACGGTGGTGGGTTCGCCGGCAGGAATCCCAACGGTTTGGTGGCGCAGGTTGGGGTTGACTCGAATCCTG ATGTGCCATTAAGATACCATATGGAAAACTGGAATCCATTTACTGACGTGGGGTCTGGCACGGGAATAGAGTCAAGCAAC GGCGAGGACAATAATGTTTCAATCATGAGGAGTCAGGTTGCTGACACAGGAAGCCAAGTTGGAATGGGAATTGACTCAGG GGTATGTTTGGATGTGGGCCATGCAAGAGAGGATCTTTTTGATAATTTGGGGTTGTCTTCAAATGGGCTGGGTGTTGGTG GGTCTCAATTTGCTGACCCGAGCCCAAATGTGCTGGAGTGTTCTCCCTTGGAGCCTATCACCAGCAATTTCACCCCAAAT TTGCCAATCCCTGATCCTGTTGCAGCTTCGCTCGAGCCTCTCATTAATGGCGACAATCAAACCCATCCATGTCAGGCGAT TTTGGCGTTTCACGAGAAAGAAGGGGCAGCTTGCGAAACAACATCATCCCATGGTTTGGCTTTGGCAGCAACCAAACGGA AATTGGTCAGGCAAGTAGTTCATTCTCTCAGTTGTTCATCTGGGTCTTTGCAAGCTGAAGATGACGGAATTCCTTGCTCT AGAGATATCGCTGCAGAAGCTAGTAAAGCTTGGCATCTGGGGAAGATGTTGGGGTTGGCTTTTCAGGGAGATGAGGGAGT AGTAGTGGGAAGATTAGAGGAATTAGAAAAGAGAGACATGGCTTTGTTATACAGCCAGGAAAAGGAAGGTGTGGAAGGGG ATGCTAACCTATCCCAATGA
Protein sequence (LotjaGi5g1v0238300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWEVFMWGEVQEVFIPNKRDKVGRRFGFVRFYDVEDPMGLSRRLDQIFIGSTKLHVNPPRFVKQLMDPETKHQNRNKQNI SRPRKTPIQSQKTVLRNIKEGKKSYADAVSGGENIDSQNHVPKEDNVAQLWIEDTVDDWLKKSWVGKIRDVSKIENLPET LIVGGVHSIRSRYMGDDLILLSGEQEENLEEILQQAKEWLDGMFSSLQPWSRNISLKRRLVWVRCYGFPLHIWKMESLKH LLKPIGDLVEMDKTTETMSNVEFARLKVVTTKLESINVAWDMNFSKVVHGIRIVEETPVAPDFWRLHHNVNVEDDDESSK WSYDGSARGAAESVDSEFIDDESGGDGHDLDGGGFAGRNPNGLVAQVGVDSNPDVPLRYHMENWNPFTDVGSGTGIESSN GEDNNVSIMRSQVADTGSQVGMGIDSGVCLDVGHAREDLFDNLGLSSNGLGVGGSQFADPSPNVLECSPLEPITSNFTPN LPIPDPVAASLEPLINGDNQTHPCQAILAFHEKEGAACETTSSHGLALAATKRKLVRQVVHSLSCSSGSLQAEDDGIPCS RDIAAEASKAWHLGKMLGLAFQGDEGVVVGRLEELEKRDMALLYSQEKEGVEGDANLSQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 317 | 316 | 1.9E-57 | – | |
| PANTHER | 2 | 317 | 316 | 1.9E-57 | – | |
| SUPERFAMILY | 7 | 71 | 65 | 2.31E-5 | ||
| CDD | 8 | 57 | 50 | 2.07747E-4 | – | |
| MobiDBLite | 67 | 90 | 24 | - | – | |
| Pfam | 165 | 268 | 104 | 5.7E-17 | ||
| MobiDBLite | 338 | 357 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0238300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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