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| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | DUF4283 domain protein; TAIR: AT2G01050.1 zinc ion binding / nucleic acid binding protein; Swiss-Prot: sp|Q2HA26|UTP10_CHAGB U3 small nucleolar RNA-associated protein 10; TrEMBL-Plants: tr|V7AUW5|V7AUW5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0265400_LC | 5 | ||
| – | DUF4283 domain protein; TAIR: AT5G36225.1 zinc knuckle protein; Swiss-Prot: sp|Q5AK62|SSD1_CANAL Virulence protein SSD1; TrEMBL-Plants: tr|A0A0B2PE36|A0A0B2PE36_GLYSO Transcription factor PIF1; Found in the gene: LotjaGi1g1v0309700_LC | 5 | ||
| – | DUF4283 domain protein; TAIR: AT5G36228.1 nucleic acid binding / zinc ion binding protein; Swiss-Prot: sp|P83548|VNNL3_DROME Vanin-like protein 3; TrEMBL-Plants: tr|A0A151RP88|A0A151RP88_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0005600_LC | 4 | ||
| – | DUF4283 domain protein; TAIR: AT3G47920.1 Ta11-like non-LTR retrotransposon; Swiss-Prot: sp|Q4ZPM1|QUIP_PSEU2 Acyl-homoserine lactone acylase QuiP; TrEMBL-Plants: tr|V7AMN3|V7AMN3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0087300_LC | 5 | ||
| – | DUF4283 domain protein; TAIR: AT3G47920.1 Ta11-like non-LTR retrotransposon; Swiss-Prot: sp|Q8WXS8|ATS14_HUMAN A disintegrin and metalloproteinase with thrombospondin motifs 14; TrEMBL-Plants: tr|V7AN97|V7AN97_PHAVU Peroxidase; Found in the gene: LotjaGi3g1v0349400_LC | 5 | ||
| – | RNA-binding protein 47; TAIR: AT3G16380.1 poly(A) binding protein 6; Swiss-Prot: sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear; TrEMBL-Plants: tr|V7AUW5|V7AUW5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0094700_LC | 14 | ||
| – | DUF4283 domain protein; TAIR: AT5G64200.1 serine/arginine-rich splicing factor-like protein, putative; Swiss-Prot: sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2; TrEMBL-Plants: tr|A0A151RZ99|A0A151RZ99_CAJCA LINE-1 reverse transcriptase isogeny; Found in the gene: LotjaGi4g1v0120800 | 9 | ||
| – | DUF4283 domain protein; TAIR: AT5G64200.1 serine/arginine-rich splicing factor-like protein, putative; Swiss-Prot: sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2; TrEMBL-Plants: tr|A0A151RZ99|A0A151RZ99_CAJCA LINE-1 reverse transcriptase isogeny; Found in the gene: LotjaGi4g1v0120800 | 9 | ||
| – | DUF4283 domain protein; TAIR: AT5G64200.1 serine/arginine-rich splicing factor-like protein, putative; Swiss-Prot: sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2; TrEMBL-Plants: tr|A0A151RZ99|A0A151RZ99_CAJCA LINE-1 reverse transcriptase isogeny; Found in the gene: LotjaGi4g1v0120800 | 9 | ||
| – | DUF4283 domain protein; TAIR: AT5G64200.1 serine/arginine-rich splicing factor-like protein, putative; Swiss-Prot: sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2; TrEMBL-Plants: tr|A0A151RZ99|A0A151RZ99_CAJCA LINE-1 reverse transcriptase isogeny; Found in the gene: LotjaGi4g1v0120800 | 9 | ||
| – | RNA recognition motif; TAIR: AT1G22760.1 poly(A) binding protein 3; Swiss-Prot: sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3; TrEMBL-Plants: tr|V7CTU7|V7CTU7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0150500 | 12 | ||
| – | Serine/arginine-rich splicing factor-like protein, putative; TAIR: AT5G64200.1 serine/arginine-rich splicing factor-like protein, putative; Swiss-Prot: sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2; TrEMBL-Plants: tr|A0A151TM91|A0A151TM91_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0207500 | 6 | ||
| – | Serine/arginine-rich splicing factor-like protein, putative; TAIR: AT5G64200.1 serine/arginine-rich splicing factor-like protein, putative; Swiss-Prot: sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2; TrEMBL-Plants: tr|A0A151TM91|A0A151TM91_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0207500 | 6 | ||
| – | RNA-binding family protein, putative; TAIR: AT5G54900.1 RNA-binding protein 45A; Swiss-Prot: sp|Q1HE00|EIF3G_BOMMO Eukaryotic translation initiation factor 3 subunit G; TrEMBL-Plants: tr|V7BYR1|V7BYR1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0243300_LC | 16 | ||
| – | DUF4283 domain protein; TAIR: AT5G36228.1 nucleic acid binding / zinc ion binding protein; Swiss-Prot: sp|O74331|RLP1_SCHPO DNA repair protein rlp1; TrEMBL-Plants: tr|V7AUW5|V7AUW5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0265300_LC | 4 | ||
| – | Serine/arginine rich splicing factor, putative; TAIR: AT5G64200.1 serine/arginine-rich splicing factor-like protein, putative; Swiss-Prot: sp|Q9BRL6|SRSF8_HUMAN Serine/arginine-rich splicing factor 8; TrEMBL-Plants: tr|A0A0B2S401|A0A0B2S401_GLYSO Uncharacterized protein; Found in the gene: LotjaGi5g1v0141400_LC | 11 | ||
| – | DUF4283 domain protein; TAIR: AT3G31430.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|Q48513|PFAP_LEPBO Putative peptidase PfaP; TrEMBL-Plants: tr|V7B3B1|V7B3B1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0238300 | 8 | ||
| – | RNA binding protein, putative; TAIR: AT5G64200.1 serine/arginine-rich splicing factor-like protein, putative; Swiss-Prot: sp|Q3MHR5|SRSF2_BOVIN Serine/arginine-rich splicing factor 2; TrEMBL-Plants: tr|A0A151TZU6|A0A151TZU6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0263400_LC | 14 | ||
| – | DUF4283 domain protein; TAIR: AT5G36225.1 zinc knuckle protein; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|V7D2J6|V7D2J6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0009400_LC | 5 | ||
| – | RNA binding; TAIR: AT5G64200.1 serine/arginine-rich splicing factor-like protein, putative; Swiss-Prot: sp|Q9FMG4|SC35_ARATH Serine/arginine-rich splicing factor SC35; TrEMBL-Plants: tr|K7KPN6|K7KPN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0084000_LC | 13 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 5.00 |