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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0239600 |
| Transcript ID | LotjaGi5g1v0239600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT3G05610.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q8GX86|PME21_ARATH Probable pectinesterase/pectinesterase inhibitor 21; TrEMBL-Plants: tr|I1LAS9|I1LAS9_SOYBN Pectinesterase; Found in the gene: LotjaGi5g1v0239600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54763886..54766957) extracted from Lotus japonicus Gifu genome v1.2.
AACCATGCGAAAATGATATAATGAAAGTTTAATACAAACTACTTAACTTATGCATGATCACCTCTCAATAAAAACACAAA ATGGCCACATGAAAATAATGTCCACTCTTATGATCCAACAGTAAGTTTTTGTTGATTATACACAGATATTGTTATTATAG TAATTTCGTAAAATGGAGATAATTGAAAGGTTGAAAGTTGTGGAAACCGAAGTGAAGGATAGCGAAGGAGCATGCATAAT ACATGGCAAATGAAGTTCCCCCCGCAATGAGTGGTGTGGTTGATTTATACTTATAGTAGAGCTCTCTGAAGCCAAGAATC AAGTAAGAGAGAAATGGTCAATGTCCCTAAAAATAAAAATCTTGAACCATCAATAGGAAACCAAAGTTCTAGAAATGGTT CAATCAACAATCCCCATTAATATCGCTCACAACACCATCCCCACATAGAGAATTTGAAACCCATTGCATTATCCCTTTCA CATACAAAACACCATTTAAAGGGTAAGAAAAGAGTTCACAAAACCAAATTAAGAAGAGGAGGGTAAAAGAAAATGGAAAA GAACAAAACAGTTGCCTCCGCCGTTTCTCTCATTCTCGTTGTGGGTGTTGTCGTCGGCGTGGTTGCACTTGTCCGCACTA ACAATGACAATAGCGCGGCCCCTGAAACCGGCAACAACAATGACATAAACACACATAGCAAATCTGTGCAGGCCGTGTGC CAAAACGCCGAAGACAAGAAGCTATGCACTGATACTCTCAAACCAGTGAGCGACTCAGACGATCCAAAGGAGTACATCGC AACGGTGGTGAAAACCTCCATGGACAGCGTCATCAAAGGCTTCAACCTTAGCGACAAACTCACGGTAGAGCATGGAAACA GCAATAGCAGCATCAAGATGGCCCTGGAGGATTGCAAGGACTTGTTACAGTTTGCCATTGAGGAGTTACAAGCGTCCAAG GTCCTGTTATGATCCTTTCACTTATATATTATTCAACATTTCATTTTTTTAATTTGATAGCAATGGTAGACAAAATAGTG AATTTCTAGCACAACCAACACAACGATTAACTTTAACTAATCAAATTCATTTCAGTGGACCCCTAAATATAATTAATTCC AATCAAATCAATTTCCCTTGGGTTGTGCGTTCTTATGCTGTGCTTATAGGCATTATACTTTATTTAATATGATACTTCTT AATTTTTATTTTTATTTTTTATTGACACTTGAAATCTCAACAGGTCCTAGTCAAGGACAATAATATGAACAATGTGAACG AGCGTGCAGCTGACCTGAAAAACTGGTTGGGTGCGGTACTTGCATACCAGGAATCATGCCTTGACGGGTTCAACACAGAC GCTGAGAAGAAGATCCAGTCTCAGCTGCAAACGGGGAGCTTGGATGACGTGGGGAAGTTGACGGCATTGGCGCTTGATAT TGTTTCTGGGATCTCAAAAGTGTTGTCTGCCATGAACTTGACTTTGGAAGTAAAACCTTCGTCTCGCCGCCTTCTTGAGG TGGATCAGGATGGGTTACCATCTTGGATATCGGGTGCGGATCGAAAGCTCTTGGCAGAGATGAAAAATGGAGGTTCGGTT CCGCCAAATGCGGTGGTTGCCAAGGATGGAAGTGGCCAGTATAAGAGTATTCTTGATGCTATTAACGCCTACCCTAAAAA GCATAAGGGTAGGTACGTGATCTATGTTAAGGCCGGTGTCTATGATGAGTACATTCAGATTGACAAGAAAAAACCTAATA TTTTGATGTACGGGGATGGCCCTAAGAAGACTGTTATCACTGGTAATAAAAATTTCGTAGATGGATACAAGACTATGAGA TCTGCCACGTTCAGTAAGTGCTTCTCAATAGATCATTTAACCATTTTATTTTATTTAGTGTTTTTATTCTGCATACTTGC CAAAATTGCCATAACAATCATAGAATTTATTCTCATAGTTTAGCACATAAACTGAATGTTTGATCAATGTGCAGCGACTG TTGCTCCAGATTTCATGGCCAAGTCAATGGGATTTGAGAACACAGCCGGCGCCAGCAAGCACCAAGCAGTAGCGCTTCGC GTGCAAGGAGACCGCTCGGCTTTCTTCGACTGTGCTATAAGCGGCTATCAAGACACCTTATATGCCCACGCCCACCGCCA GTTCTACCGAAACTGCGAAATCTCCGGCACGGTGGACTTCATCTTCGGCTACTCAACACTCCTAATCCAAAGCTCCAAGC TCATAGTGAGAAAACCCGGTAAGAATCAGCAAAACATAGTAGTGGCCGACGGAACAGCCCAGAAGAACATGCCCACAGGA GCAGTGATCCAGAACTGCCAGATCGTGCCGGAGCCAAGCCTTGCCGCGGATAAGTCCGTGAGGACGTACCTGGCTCGGCC GTGGAAGGCCTATTCAAGGGCGATCTTCATGGAGAATAACATTGGTGACTTGATCCAGCCAGATGGGTTTCTTCCTTGGC AAGGAACCCAGTTTCTTGACACGTGCTTTTTTGCGGAGTTTGGGAACACTGGATCAGGTGCCAATGTTCAGAAGAGAGTC AAGTGGGGAAAAGGTGTTCTTAGCAAAGGTGATGCTATTAAATACACTGCTGATCAGTGGCTCCAAGCAGGCGAGTGGTT ACCGGCTACCGGCATACCCTATGATCCTGGCTTCACTAAAGCATGATGAGAACCATGCATTGTGTGATGTTGGAATCAGA TCATAGTGTTTTGATCTTTTAGAAGAACCGGCCACTACTAACAGCTTAGTCCATTTCTGAGTTTAGGTCAATCAAACTTG AAGCCTTTAAATGAAACACAACAAAGTAGTTAAAAAAGAAATATATATGTAGGATCTATAGAGATTCAATGAATGTGGAT AGTACAAGTTGAGGCACTATCCTCTGTATAGCCTATCCCTATGTATAGTTTATATATAGTATTTAATTCTTTTTTATTTG CTTTGATTTTTATCAAATTTGTTTTACATTCCAATAATACATTCATATCTAATGTTTCTCTCTCTCTCTCTCTATATATA TATATATATCTTCATCCCTCTTAATATATGGC
CDS sequence (LotjaGi5g1v0239600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAAGAACAAAACAGTTGCCTCCGCCGTTTCTCTCATTCTCGTTGTGGGTGTTGTCGTCGGCGTGGTTGCACTTGT CCGCACTAACAATGACAATAGCGCGGCCCCTGAAACCGGCAACAACAATGACATAAACACACATAGCAAATCTGTGCAGG CCGTGTGCCAAAACGCCGAAGACAAGAAGCTATGCACTGATACTCTCAAACCAGTGAGCGACTCAGACGATCCAAAGGAG TACATCGCAACGGTGGTGAAAACCTCCATGGACAGCGTCATCAAAGGCTTCAACCTTAGCGACAAACTCACGGTAGAGCA TGGAAACAGCAATAGCAGCATCAAGATGGCCCTGGAGGATTGCAAGGACTTGTTACAGTTTGCCATTGAGGAGTTACAAG CGTCCAAGGTCCTAGTCAAGGACAATAATATGAACAATGTGAACGAGCGTGCAGCTGACCTGAAAAACTGGTTGGGTGCG GTACTTGCATACCAGGAATCATGCCTTGACGGGTTCAACACAGACGCTGAGAAGAAGATCCAGTCTCAGCTGCAAACGGG GAGCTTGGATGACGTGGGGAAGTTGACGGCATTGGCGCTTGATATTGTTTCTGGGATCTCAAAAGTGTTGTCTGCCATGA ACTTGACTTTGGAAGTAAAACCTTCGTCTCGCCGCCTTCTTGAGGTGGATCAGGATGGGTTACCATCTTGGATATCGGGT GCGGATCGAAAGCTCTTGGCAGAGATGAAAAATGGAGGTTCGGTTCCGCCAAATGCGGTGGTTGCCAAGGATGGAAGTGG CCAGTATAAGAGTATTCTTGATGCTATTAACGCCTACCCTAAAAAGCATAAGGGTAGGTACGTGATCTATGTTAAGGCCG GTGTCTATGATGAGTACATTCAGATTGACAAGAAAAAACCTAATATTTTGATGTACGGGGATGGCCCTAAGAAGACTGTT ATCACTGGTAATAAAAATTTCGTAGATGGATACAAGACTATGAGATCTGCCACGTTCACGACTGTTGCTCCAGATTTCAT GGCCAAGTCAATGGGATTTGAGAACACAGCCGGCGCCAGCAAGCACCAAGCAGTAGCGCTTCGCGTGCAAGGAGACCGCT CGGCTTTCTTCGACTGTGCTATAAGCGGCTATCAAGACACCTTATATGCCCACGCCCACCGCCAGTTCTACCGAAACTGC GAAATCTCCGGCACGGTGGACTTCATCTTCGGCTACTCAACACTCCTAATCCAAAGCTCCAAGCTCATAGTGAGAAAACC CGGTAAGAATCAGCAAAACATAGTAGTGGCCGACGGAACAGCCCAGAAGAACATGCCCACAGGAGCAGTGATCCAGAACT GCCAGATCGTGCCGGAGCCAAGCCTTGCCGCGGATAAGTCCGTGAGGACGTACCTGGCTCGGCCGTGGAAGGCCTATTCA AGGGCGATCTTCATGGAGAATAACATTGGTGACTTGATCCAGCCAGATGGGTTTCTTCCTTGGCAAGGAACCCAGTTTCT TGACACGTGCTTTTTTGCGGAGTTTGGGAACACTGGATCAGGTGCCAATGTTCAGAAGAGAGTCAAGTGGGGAAAAGGTG TTCTTAGCAAAGGTGATGCTATTAAATACACTGCTGATCAGTGGCTCCAAGCAGGCGAGTGGTTACCGGCTACCGGCATA CCCTATGATCCTGGCTTCACTAAAGCATGA
Protein sequence (LotjaGi5g1v0239600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKNKTVASAVSLILVVGVVVGVVALVRTNNDNSAAPETGNNNDINTHSKSVQAVCQNAEDKKLCTDTLKPVSDSDDPKE YIATVVKTSMDSVIKGFNLSDKLTVEHGNSNSSIKMALEDCKDLLQFAIEELQASKVLVKDNNMNNVNERAADLKNWLGA VLAYQESCLDGFNTDAEKKIQSQLQTGSLDDVGKLTALALDIVSGISKVLSAMNLTLEVKPSSRRLLEVDQDGLPSWISG ADRKLLAEMKNGGSVPPNAVVAKDGSGQYKSILDAINAYPKKHKGRYVIYVKAGVYDEYIQIDKKKPNILMYGDGPKKTV ITGNKNFVDGYKTMRSATFTTVAPDFMAKSMGFENTAGASKHQAVALRVQGDRSAFFDCAISGYQDTLYAHAHRQFYRNC EISGTVDFIFGYSTLLIQSSKLIVRKPGKNQQNIVVADGTAQKNMPTGAVIQNCQIVPEPSLAADKSVRTYLARPWKAYS RAIFMENNIGDLIQPDGFLPWQGTQFLDTCFFAEFGNTGSGANVQKRVKWGKGVLSKGDAIKYTADQWLQAGEWLPATGI PYDPGFTKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 35 | 35 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 3 | 567 | 565 | 1.8E-301 | – | |
| PANTHER | 3 | 567 | 565 | 1.8E-301 | – | |
| Phobius | 7 | 27 | 21 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 28 | 569 | 542 | - | – | |
| TIGRFAM | 45 | 184 | 140 | 1.1E-17 | ||
| SMART | 47 | 202 | 156 | 2.9E-25 | ||
| Gene3D | 48 | 207 | 160 | 9.1E-15 | ||
| SUPERFAMILY | 50 | 204 | 155 | 3.14E-22 | ||
| Pfam | 51 | 202 | 152 | 1.2E-20 | ||
| CDD | 54 | 208 | 155 | 1.35751E-36 | – | |
| Gene3D | 253 | 566 | 314 | 1.4E-120 | ||
| SUPERFAMILY | 256 | 564 | 309 | 3.45E-98 | ||
| Pfam | 258 | 550 | 293 | 3.3E-120 | ||
| ProSitePatterns | 402 | 411 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi5g1v0239600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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