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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0241100 |
| Transcript ID | LotjaGi5g1v0241100.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polygalacturonase family; TAIR: AT1G02460.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100; TrEMBL-Plants: tr|A0A151SMX4|A0A151SMX4_CAJCA Polygalacturonase family; Found in the gene: LotjaGi5g1v0241100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54939555..54942825) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGTCGGTTCCCACTTCTAAAGACATTAAAAAAATTTGGTAATGGGCTAATGAAACTTACCAGATTCTCCACTATGCC TTCTTATTATATATAGTAACTCATCCTTTCTGATTCTGCATGTACTCCAATTCACAGTGCTCAAACTAGTTCAACTTGTT GCAACTTGTGATCTAGTGCTCCTAGTGGTCACTTGAACAACGAAATTAAAACCATTGGTTTCTTCCCAACTTTCCCAAAC TCAGGGTGCCTAATTAGTCCATAATTTGAGCCTTTATTTCTTTCATCTCATTTTTAACTCACAACCAATTGTTGTTTCAA GTTTTCAAATTTTCTCCTATTTTATCTGTTTTACCTTCTTATTTCTTTTTTAATCTCCACTACTAAAAAATACTCAGAAT GAGGAATTCTCCTATTTTAACACTATCAATTTTCTCCATATACTTTCTTACGTTATTTCTTTCCACACAAGCAAGATACC ATTTCCATACAAAACACCACCAGCACCCACATTCTCAAAAGTCTTCAGGAATTTCACTACCACCTGCTTCACTCCCTTCA CCTTCTAGCTATACTGATGATGATGCTCCTAGTCCTAGCCCCTCTGGTGATGAAAACTACCATGATGAATCTAACTTGTT CAATATAAGAACATTTGGGGCCATTGGTGATGGAATAGCTGATGATACAGAATCCTTCAAGATGGCTTGGGACAGTGCCT GCCTAAGTGAATCAGAAGTTAACACTATCCTTGTTCCCCCTGGATTCTCCTTCGTTATTCAATCTACTATATTCACAGGT CCTTGTCAAGGTAGCATAGTATTGAAGGTAATGTACTTAACTAAGCACATTTTTTGTTCTGCTGGTTGAGTTTTCAAGTG TGAGTTTGGAGACTCACATTGTTCAAGAATGAGTCCAAGATAATATAAGAAACATGACTCACATAACCAAAGCACTAAGT ATAGATGTGGTGTCCAATTCTCGTTGTGGTCTTGTTAGTTGGCCGGCCCCAAGGACAGACCTAGGCATAAGAAAATGGGG CGGTTGCTGGTCGCCCCAAGAGAAAAAGAATTCCTTAACAAAGCAGTGTAGAAAGGATATATTGCCCCCTTAAATAATTT ATATTATCTCTTTTAATTAGTCATTGTAGATTTCATTTCATGTGTTAAACTTTTGCCCCCTTCACATATTTTTTCTAGTT CAGTCCCAGCCTGCCCATTGGGCTTCCCCTGTCTCCCCCAACACCTCTTGCATCATGGATAAAACTTATGATTAAAGCTC ACTATTTTACTTTTCATATGGAGAAGGTTGATGGAACTCTTATGCCACCTGATGGACCTGAATCTTGGCCAAAGAACAAT AGCAAGCGTCAATGGTTGGTCTTTTATAGAATCAATGGGATGTCACTTGAAGGAAGTGGTTTAATTGATGGGAGAGGACA AAAATGGTGGGACCTTCCCTGTAAACCTCATAAGGTATTCATGATTTCAAAGTATTAACAACAACAAAATAAGCAATTTT GATGTTTCAAGTACATTAGCTGATCCCTAATAAATTCCACAGGGACCTAATGGGACAACATCCCCAGGACCTTGTGACAG CCCAGTTGTAAGTTATCAAATCAAAACCTTTCTTATATATGCATCTTGTGCTTTTATAACTGCATTATGGTATATAATGT CATGAACCAGACGCTTAAACTGTTGGGGTAAAAGATACATGAATGATTTTTATGTTATATTTCACATTGGGCAAGAACTC ATTGGCCTTGAAGCGTGACACTGCACAGATCGACATGCTGAAATTCAAGTTTTTATTAGAATAATGGGACAACAAGGATT GATATCTGACCACTCAGTCATAGAAACTCTGTTACCATACCATGTCATGAATTAACTTCTGCAAAAGCTTAAGTTGTTGA GTAAAGTACACACCAATGTATATTTCTAATATATAACTTTACATATTGCAGGCCTTAAGGTTTTTCATGAGTTCCAACTT GACTGTAAAAGGACTTAGGATAAAAAATAGCCCCCAATTCCATTTCAGATTTGATGGCTGCCAAAGTGTCCATGTAGAAT CAATCTTCTTAACAGCTCCAGCACTAAGCCCCAACACTGATGGAATCCACATAGAGAATACCAATGACGTGAAGATATAC AATTCTGTCATTTCTAATGGTTAGCCACCAATATTCCCCTACTTTCCCTTCATCTTTTGCATCAAAAAGGAATTAGCATT AGATGTTTTATGAATTATAGGTGATGACTGTGTGTCCATTGGATCTGGTTGCTATGATGTTGATATAAAGAACATGACAT GCGGACCAGGTCATGGAATCAGGTAACTTTTTATTATTTCAAGAGAACTTTCATCAATAGGGTATTTTCTTGTTCTTATG GTTAACTTCAATCTATTTTCTCTAGTTAATGTCACTGTATTAATTTTTTCAGCATTGGTAGTCTGGGAAATCACAACTCT AGAGCCTGTGTTTCAAACATCACAGTGAGGGACTCAGTCATAAAATTGTCAGATAATGGGGTTAGAATCAAGACATGGCA AGGTGGATCAGGATCAGTATCAGGAGTGACATTCAGCAACATTCACATGGATAGTGTGAAGAATCCCATTATAATTGACC AGTTCTATTGCCTTAGCAAGGAATGCACAAACAAGACCTCTGCAGTGTTTGTATCAGATATAGTTTACTCAAACATAAAG GGAACTTATGATGTAAGGCACCCTCCTATGCATTTCGCTTGCAGTGACTCTATCCCCTGCACCAACTTGACTCTTTCAGA TATTGAGCTTCTTCCTGCTCAAGGAGACATGGTGCTTGATCCTTTCTGTTGGAATGCTTATGGAAATTCAGAGACACTAA CTATTCCCCCAGTGTTTTGCTTGCTGGAAGGTTTTCCTCAGTCCATTTCAACCAATGATATAGATCATTGCTAATCCACT GAATTCTGCAAAGCAAAAATGTGTGTTTGTGTATATAATTGCTATGGAAGTGATTAAGGAATGTAGTGTAATCTTGAGTA TTTGTGTGTGGTTGTTGAGGAGTTGTGTTTTATAAGCTCCTCCTCAATTATTGTTATGAAAGGGAAGTTTGGACTTGTTG GCTTGAATTTGTGACCAACATGTATGTAGCTTAAAGTGTGTTATTTTTAAAGATCAATCATGATGAATGTGTTAAGAATG AGTCCAAAACATGGCATTTGCAGCATTTCTCCTGAATAAATCTTGATCCACTACTGCCATTATTGTCATGG
CDS sequence (LotjaGi5g1v0241100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAATTCTCCTATTTTAACACTATCAATTTTCTCCATATACTTTCTTACGTTATTTCTTTCCACACAAGCAAGATA CCATTTCCATACAAAACACCACCAGCACCCACATTCTCAAAAGTCTTCAGGAATTTCACTACCACCTGCTTCACTCCCTT CACCTTCTAGCTATACTGATGATGATGCTCCTAGTCCTAGCCCCTCTGGTGATGAAAACTACCATGATGAATCTAACTTG TTCAATATAAGAACATTTGGGGCCATTGGTGATGGAATAGCTGATGATACAGAATCCTTCAAGATGGCTTGGGACAGTGC CTGCCTAAGTGAATCAGAAGTTAACACTATCCTTGTTCCCCCTGGATTCTCCTTCGTTATTCAATCTACTATATTCACAG GTCCTTGTCAAGGTAGCATAGTATTGAAGGTTGATGGAACTCTTATGCCACCTGATGGACCTGAATCTTGGCCAAAGAAC AATAGCAAGCGTCAATGGTTGGTCTTTTATAGAATCAATGGGATGTCACTTGAAGGAAGTGGTTTAATTGATGGGAGAGG ACAAAAATGGTGGGACCTTCCCTGTAAACCTCATAAGGGACCTAATGGGACAACATCCCCAGGACCTTGTGACAGCCCAG TTGCCTTAAGGTTTTTCATGAGTTCCAACTTGACTGTAAAAGGACTTAGGATAAAAAATAGCCCCCAATTCCATTTCAGA TTTGATGGCTGCCAAAGTGTCCATGTAGAATCAATCTTCTTAACAGCTCCAGCACTAAGCCCCAACACTGATGGAATCCA CATAGAGAATACCAATGACGTGAAGATATACAATTCTGTCATTTCTAATGGTGATGACTGTGTGTCCATTGGATCTGGTT GCTATGATGTTGATATAAAGAACATGACATGCGGACCAGGTCATGGAATCAGCATTGGTAGTCTGGGAAATCACAACTCT AGAGCCTGTGTTTCAAACATCACAGTGAGGGACTCAGTCATAAAATTGTCAGATAATGGGGTTAGAATCAAGACATGGCA AGGTGGATCAGGATCAGTATCAGGAGTGACATTCAGCAACATTCACATGGATAGTGTGAAGAATCCCATTATAATTGACC AGTTCTATTGCCTTAGCAAGGAATGCACAAACAAGACCTCTGCAGTGTTTGTATCAGATATAGTTTACTCAAACATAAAG GGAACTTATGATGTAAGGCACCCTCCTATGCATTTCGCTTGCAGTGACTCTATCCCCTGCACCAACTTGACTCTTTCAGA TATTGAGCTTCTTCCTGCTCAAGGAGACATGGTGCTTGATCCTTTCTGTTGGAATGCTTATGGAAATTCAGAGACACTAA CTATTCCCCCAGTGTTTTGCTTGCTGGAAGGTTTTCCTCAGTCCATTTCAACCAATGATATAGATCATTGCTAA
Protein sequence (LotjaGi5g1v0241100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRNSPILTLSIFSIYFLTLFLSTQARYHFHTKHHQHPHSQKSSGISLPPASLPSPSSYTDDDAPSPSPSGDENYHDESNL FNIRTFGAIGDGIADDTESFKMAWDSACLSESEVNTILVPPGFSFVIQSTIFTGPCQGSIVLKVDGTLMPPDGPESWPKN NSKRQWLVFYRINGMSLEGSGLIDGRGQKWWDLPCKPHKGPNGTTSPGPCDSPVALRFFMSSNLTVKGLRIKNSPQFHFR FDGCQSVHVESIFLTAPALSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGSGCYDVDIKNMTCGPGHGISIGSLGNHNS RACVSNITVRDSVIKLSDNGVRIKTWQGGSGSVSGVTFSNIHMDSVKNPIIIDQFYCLSKECTNKTSAVFVSDIVYSNIK GTYDVRHPPMHFACSDSIPCTNLTLSDIELLPAQGDMVLDPFCWNAYGNSETLTIPPVFCLLEGFPQSISTNDIDHC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 21 | 16 | - | – | |
| PANTHER | 7 | 468 | 462 | 1.5E-257 | – | |
| PANTHER | 7 | 468 | 462 | 1.5E-257 | – | |
| Phobius | 22 | 25 | 4 | - | – | |
| Phobius | 26 | 477 | 452 | - | – | |
| MobiDBLite | 31 | 74 | 44 | - | – | |
| MobiDBLite | 40 | 74 | 35 | - | – | |
| Gene3D | 67 | 463 | 397 | 1.1E-119 | ||
| SUPERFAMILY | 79 | 466 | 388 | 6.29E-127 | ||
| Pfam | 112 | 430 | 319 | 6.8E-90 | ||
| SMART | 221 | 270 | 50 | 970.0 | ||
| SMART | 271 | 292 | 22 | 40.0 | ||
| SMART | 294 | 314 | 21 | 9300.0 | ||
| ProSitePatterns | 301 | 314 | 14 | - | ||
| SMART | 324 | 345 | 22 | 28.0 | ||
| SMART | 353 | 374 | 22 | 2100.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi5g1v0241100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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