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LotjaGi5g1v0241500.4

Overview

Field Value
Gene ID LotjaGi5g1v0241500
Transcript ID LotjaGi5g1v0241500.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description ADP-ribosylation factor; TAIR: AT1G10630.1 ADP-ribosylation factor A1F; Swiss-Prot: sp|P51823|ARF2_ORYSJ ADP-ribosylation factor 2; TrEMBL-Plants: tr|K7LJF5|K7LJF5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0241500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:54984614..54986237) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGGTTGTCTTTCACCAAGCTGTTCAGCAGGCTCTTTGCCAAGAAAGAGATGCGTATTCTTATGGTAGGTCTCGATGC TGCGGGTAAGACTACCATTCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCCACCATTGGTAAGTTACCAC CACGCTTCATTTGGCATTTTCCACACATTTCCCTTCATTCTAATATTATTCTTTGTGGTGTCCATCGAGATTGGTATATT ATATTGTCAATGTTTTAAGCCTAACTATATATGTTGTCTTCATGTTGATGGTTTTATCTCATGTCTCACCATTCTAATAG TACGTTCCTTGTGCAATTTCTACTAATGTCTCATTTTGTCTAGGGTTTAATGTGGAAACCGTGGAATATAAGAACATCAG CTTCACTGTCTGGGATGTCGGAGGTCAGGACAAGGTAATTTTCCCCCCTACATCTTCTATGTCTATATTAGAATACTTTT TGATATTTTAGCAAATTGTACTCAACAATTTTGTTGATTTTATAACATGGTAACTAGCCTATAATCCACTTGACTAACTA TGCAAAATACATATGAGCTGCAAAATGTTGTTTGTATTCACCATACCATACATGTACTCCTTTTCATTAAGATACAGATG TGCTTCAAAATACATATGTTGTTTGGATTAGAGGTGCATAATGGTTCATTCTGCACAATGTTTATGCAAATTTGTGCTTA TGGTGATACCTAGCTGGTTATCAATATCATAATCCAAATGTCAATGACATCTTCTACTCCTTTTTAATGCCAGTTTCTTG ATTTACGACTCTGGATGTAATCAACCTCTTACAAGTGTGATAAACTACTATTCACTTATTTTTTATGGAATTTGTATATC TTTAAGTTAGTCCTTTGGATCAATTTGGCACTGGCCCCTAAAACCTCTGTGTTATTCTGTTAGATCTCTTTGGATCAATT TGGTACTGACCATTGATATGTTTGTACCTGTAGATCCGTCCACTGTGGAGACATTACTTCCAAAATACACAAGGACTTAT TTTTGTGGTTGATAGCAATGACAGGGACCGTGCTGTTGAAGCTAGAGATGAGCTGCATAGGATGTTGAATGAGGTAATAA AACAGATCCTGAATGAGTGATTATGAAATGTCGATTATTTCAGATGATTTTGTATACTGGATTATACTGTCTTTTTGGAT GCTTATAATCTTACAATGGTAGGATGAGTTGAGAGATGCCGTGCTACTAGTTTTTGCTAACAAGCAAGATCTTCCAAATG CTATGAATGCTGCTGAGATAACTGATAAGCTTGGTCTTCATTCTCTCCGTCAGCGTCACTGGTACACTAAAGATTTTGCT CTCAACATTTAACTCCTCTCTGTCTTCCTGCATTCATCACTCATTCTCACTAACATGCTCTACGCATGCAGGTATATCCA GAGCACATGTGCCACGTCTGGTGAAGGGCTTTATGAAGGACTTGACTGGCTCTCAAACAACATTGCAAACAAGGTTAATA TGGAACAGTTATTATGACGTACTTGGAAATTTAAATTACAACATAATAGTTGTAACTGATGCTTTTTTTTTTTTAAATGA TGTGCAGGCATAGAGAGTTATTAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0241500.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGTTGTCTTTCACCAAGCTGTTCAGCAGGCTCTTTGCCAAGAAAGAGATGCGTATTCTTATGGTAGGTCTCGATGC TGCGGGTAAGACTACCATTCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCCACCATTGGGTTTAATGTGG AAACCGTGGAATATAAGAACATCAGCTTCACTGTCTGGGATGTCGGAGGTCAGGACAAGATCCGTCCACTGTGGAGACAT TACTTCCAAAATACACAAGGACTTATTTTTGTGGTTGATAGCAATGACAGGGACCGTGCTGTTGAAGCTAGAGATGAGCT GCATAGGATGTTGAATGAGGATGAGTTGAGAGATGCCGTGCTACTAGTTTTTGCTAACAAGCAAGATCTTCCAAATGCTA TGAATGCTGCTGAGATAACTGATAAGCTTGGTCTTCATTCTCTCCGTCAGCGTCACTGGTATATCCAGAGCACATGTGCC ACGTCTGGTGAAGGGCTTTATGAAGGACTTGACTGGCTCTCAAACAACATTGCAAACAAGGCATAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0241500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH YFQNTQGLIFVVDSNDRDRAVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA TSGEGLYEGLDWLSNNIANKA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11711:SF314
1 180 180 1.6E-152 –
SMART
SM00178
1 177 177 5.0E-25 –
SMART
SM00177
1 181 181 3.0E-135 –
PANTHER
PTHR11711
1 180 180 1.6E-152 –
Pfam
PF00025
5 177 173 9.2E-80
IPR006689
ProSiteProfiles
PS51417
11 177 167 25.486 –
SUPERFAMILY
SSF52540
14 179 166 5.74E-58
IPR027417
TIGRFAM
TIGR00231
16 157 142 2.0E-23
IPR005225
CDD
cd04150
18 176 159 3.60457E-126 –
SMART
SM00175
18 180 163 0.0033 –
Gene3D
G3DSA:3.40.50.300
18 177 160 5.7E-71 –
PRINTS
PR00328
19 42 24 1.3E-19
IPR006689
PRINTS
PR00328
47 71 25 1.3E-19
IPR006689
PRINTS
PR00328
74 99 26 1.3E-19
IPR006689
PRINTS
PR00328
119 140 22 1.3E-19
IPR006689
Coils
Coil
178 181 4 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0241500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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