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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0241700 |
| Transcript ID | LotjaGi5g1v0241700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT1G48000.1 myb domain protein 112; Swiss-Prot: sp|Q9LDE1|MY108_ARATH Transcription factor MYB108; TrEMBL-Plants: tr|I3RSY6|I3RSY6_LOTJA R2R3MYB transcription factor; Found in the gene: LotjaGi5g1v0241700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55002583..55004377) extracted from Lotus japonicus Gifu genome v1.2.
GCCAACCAATGAAAAATCTTCAATACCACTATAATTGAAGTATATGGAATCTGGTGCATTCTCTGTGTACTTTTAGTCAC TGACCATCTTTATCATTCCGTGGAGTGCAGAACAGGGAGTGTGGTTATTCTTATCCAACTCTATTAGTATTATATATAAA TTCCACATGCCCCCAATAAGTGAAAACCATCAATTCCTTAACAGAGACCAAATCCCACACGCTTCTTCATTTCATAGCCG TACTGTCCTATCCATATATAGACCATACCATTCGTTCTTCCTCTCCCAAAATTACACACGCACTTTCACACTCGTCACCA CCTCAATATACATAGGCAAAACAGAGTAGCATGAGAAGTGTAGATCCTAAGGTTAAGAAAGGAGTGTCTGTAACAGAGCA CAAAGAAAACGATTCAACAAGCATCAGAAAAGGTCCATGGACGTTAGATGAGGACACCATTCTCATCAATTACATTACCA CCCACGGTGAAGGTCACTGGAATTCGCTGGCACGTGCTGCAGGCAAGTTACTGCACTTTCATTTTGTCTTCAATTATATA TAATTGAAAAAGATACAGAAACCTCTTAATATTGCAGTACGCTTCGAGACACCTCACTTTATTTGCGGAATCAAAACCGC TACAATAGTGAGGTGTCCCTGGACTGCAAGGTTAAGGGGTTTCGATTATAATTTAGAAATCTAAAACTGAAACATGAATT ATATTAATACAGGTTTGAGGAGAAATGGGAAAAGTTGCAGATTGAGGTGGCTAAACTACTTGCGCCCTGATGTTCGGCGT GGAAACATCACACTCCAAGAGCAGATATTGATCCTTGAACTCCATTCTCAGTGGGGTAACAGGTGGTCAAAGATTGCTCA GCATCTACCAGGAAGAACAGACAACGAAATCAAGAACTATTGGAGAACGAGGGTGATAAAGCAAGCAAAGCAGCTAAAGT GCGATGTCAACAGCAAACAATTCAGAGACACCTTGCGTCACGTGTGGATGCCACGCTTGCTGGAGCGAGTTCAGACAAAC AGAACAGAGTGTGTAAAACAGAGCAACTCCCTCTCCTCCGGTTCAAGTGGAGCATACTCAGACTCATCGTCACTGGAGCT CCATGTTGGTTCAAATTCAGACCCTGAACTGTTGGGTCGTGATGTCTCGGTGGATTTAAGGCCATGTTTCAATGACCAGA TGTTAGAACAGGGGAAGGGTGGTGGTGACTCGTTAGAGAATTTGTGGAATGATGAGAGTATGTGGTTTAATTTGCAGCAA TTTTCTGATGGCATGGAATCAACATACAGTTAATTTCCTTGCGTGACGCACTGGATTTAATAGTAATAGGTATAGGTATA TTGCATTAGGGATGATCTTTTTCCTAAAGAATGATCATGATGATTTTTCCTACAAGCAAGTGCACGCTCTAGCAATGAAT GATGTGATTAGTTTTTCTTTTTTCTTTTTTTGGTATTTTCCTGTGGGAATTACTAGTTTTAGCGATGCGAGAGTTGGGTT GCTTCTACGCTTGTTAAATAGAGTTTGTGGAGAGCAAGCAATGTGTTTCATACTTCAAACCTCAAAAGGAATGGAAGTTT AGTGCTCCATCAATCTCGCAGCTAGATTAGTTGACTATCTCATTTCCATCGTTTTTTTCTGTCCTAGTAGTATCTTAACA ATTTCTAATTGTAAAGCAGCATGTGAAATCTTAAATTGTCATTCAACACATGTTACACGCGGGATATGCATTACTTATTA AGTTACACAATCAATTGGTTATATCTTGAATAAAG
CDS sequence (LotjaGi5g1v0241700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAGTGTAGATCCTAAGGTTAAGAAAGGAGTGTCTGTAACAGAGCACAAAGAAAACGATTCAACAAGCATCAGAAA AGGTCCATGGACGTTAGATGAGGACACCATTCTCATCAATTACATTACCACCCACGGTGAAGGTCACTGGAATTCGCTGG CACGTGCTGCAGGTTTGAGGAGAAATGGGAAAAGTTGCAGATTGAGGTGGCTAAACTACTTGCGCCCTGATGTTCGGCGT GGAAACATCACACTCCAAGAGCAGATATTGATCCTTGAACTCCATTCTCAGTGGGGTAACAGGTGGTCAAAGATTGCTCA GCATCTACCAGGAAGAACAGACAACGAAATCAAGAACTATTGGAGAACGAGGGTGATAAAGCAAGCAAAGCAGCTAAAGT GCGATGTCAACAGCAAACAATTCAGAGACACCTTGCGTCACGTGTGGATGCCACGCTTGCTGGAGCGAGTTCAGACAAAC AGAACAGAGTGTGTAAAACAGAGCAACTCCCTCTCCTCCGGTTCAAGTGGAGCATACTCAGACTCATCGTCACTGGAGCT CCATGTTGGTTCAAATTCAGACCCTGAACTGTTGGGTCGTGATGTCTCGGTGGATTTAAGGCCATGTTTCAATGACCAGA TGTTAGAACAGGGGAAGGGTGGTGGTGACTCGTTAGAGAATTTGTGGAATGATGAGAGTATGTGGTTTAATTTGCAGCAA TTTTCTGATGGCATGGAATCAACATACAGTTAA
Protein sequence (LotjaGi5g1v0241700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRSVDPKVKKGVSVTEHKENDSTSIRKGPWTLDEDTILINYITTHGEGHWNSLARAAGLRRNGKSCRLRWLNYLRPDVRR GNITLQEQILILELHSQWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDTLRHVWMPRLLERVQTN RTECVKQSNSLSSGSSGAYSDSSSLELHVGSNSDPELLGRDVSVDLRPCFNDQMLEQGKGGGDSLENLWNDESMWFNLQQ FSDGMESTYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PANTHER | 17 | 174 | 158 | 5.2E-102 | – | |
| PANTHER | 17 | 174 | 158 | 5.2E-102 | – | |
| ProSiteProfiles | 22 | 74 | 53 | 15.606 | ||
| Gene3D | 24 | 80 | 57 | 1.2E-17 | – | |
| SUPERFAMILY | 24 | 121 | 98 | 8.78E-30 | ||
| SMART | 26 | 76 | 51 | 1.6E-12 | ||
| Pfam | 27 | 74 | 48 | 5.3E-13 | ||
| CDD | 29 | 74 | 46 | 1.028E-8 | ||
| ProSiteProfiles | 75 | 129 | 55 | 23.594 | ||
| SMART | 79 | 127 | 49 | 2.9E-14 | ||
| Pfam | 80 | 123 | 44 | 4.8E-14 | ||
| CDD | 84 | 123 | 40 | 3.62683E-10 | ||
| Gene3D | 84 | 125 | 42 | 1.5E-16 | – | |
| MobiDBLite | 165 | 192 | 28 | - | – | |
| MobiDBLite | 165 | 190 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0241700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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